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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Yu, T."

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Search Summary

This query matches 38 Structures.

Refinements

Structure Determination Methodology

experimental (38)

Scientific Name of Source Organism

	Homo sapiens (19)
	Arabidopsis thaliana (4)
	Mus musculus (4)
	Escherichia coli (3)
	Klebsiella pneumoniae (3)
	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (2)
	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (2)
	Rattus norvegicus (2)
	Blomia tropicalis (1)
	Legionella pneumophila (1)

More...

Taxonomy

	Eukaryota (28)
	Bacteria (11)
	Archaea (1)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (29)
	ELECTRON MICROSCOPY (6)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (38)
	RNA (3)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (8)
	2.0 - 2.5 (11)
	2.5 - 3.0 (11)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (5)
	2010 - 2014 (12)
	2015 - 2019 (9)
	2020 - 2024 (12)

Enzyme Classification Name

	Hydrolases (12)
	Transferases (10)
	Ligases (2)

Membrane Protein Annotation

	MemProtMD (2)
	PDBTM (2)
	OPM (1)

Symmetry Type

	Asymmetric (30)
	Cyclic (8)

SCOP Classification

	Alpha and beta proteins (a+b) (9)
	All beta proteins (6)
	All alpha proteins (7)
	Artifacts (7)
	Alpha and beta proteins (a/b) (4)
	Small proteins (1)

AllSelected

1 to 25 of 38 Structures

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2MEY	Download File View File

RDC refined solution structure of Blo t 5.

Naik, M.T., Huang, T.

To be published

Released	2014-11-05
Method	SOLUTION NMR
Organisms	Blomia tropicalis
Macromolecule	Mite allergen Blo t 5 (protein)

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2MLK	Download File View File

Three-dimensional structure of the C-terminal DNA-binding domain of RstA protein from Klebsiella pneumoniae

Fang, P., Chen, S., Cheng, Y., Chang, C., Yu, T., Huang, T.

(2014) Nucleic Acids Res 42: 8777-8788

Released	2014-07-16
Method	SOLUTION NMR
Organisms	Klebsiella pneumoniae
Macromolecule	RstA (protein)

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2VH7	Download File View File

Crystal structure of human common-type acylphosphatase

Yeung, R.C.Y., Lam, Y., Wong, K.B.

(2011) PLoS Biol 9: 1027

Released	2009-03-17
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	ACYLPHOSPHATASE-1 (protein)

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2W4C	Download File View File

Human common-type acylphosphatase variant, A99

Lam, S.Y., Wong, K.B.

(2011) PLoS Biol 9: 1027

Released	2009-12-22
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Homo sapiens
Macromolecule	ACYLPHOSPHATASE-1 (protein)

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2W4D	Download File View File

Acylphosphatase variant G91A from Pyrococcus horikoshii

Lam, S.Y., Wong, K.B.

(2011) PLoS Biol 9: 1027

Released	2009-12-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pyrococcus horikoshii
Macromolecule	ACYLPHOSPHATASE (protein)
Unique Ligands	K, PO4

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2W4P	Download File View File

Human common-type acylphosphatase variant, A99G

Lam, S.Y., Sze, K.H., Wong, K.B.

(2011) PLoS Biol 9: 1027

Released	2009-12-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	ACYLPHOSPHATASE-1 (protein)
Unique Ligands	GOL

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3H42	Download File View File

Crystal structure of PCSK9 in complex with Fab from LDLR competitive antibody

Piper, D.E., Walker, N.P.C., Romanow, W.G., Thibault, S.T., Tsai, M.M., Yang, E.

(2009) Proc Natl Acad Sci U S A 106: 9820-9825

Released	2009-05-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Fab from LDLR competitive antibody: Heavy chain (protein) Fab from LDLR competitive antibody: Light chain (protein) Proprotein convertase subtilisin/kexin type 9 (protein)
Unique Ligands	NA

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3MYG	Download File View File

Aurora A Kinase complexed with SCH 1473759

Hruza, A., Prosis, W., Ramanathan, L.

(2010) ACS Med Chem Lett 1: 214-218

Released	2010-07-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase 6 (protein)
Unique Ligands	EML, PG4

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3O7L	Download File View File

Crystal Structure of phospholamban (1-19):PKA C-subunit:AMP-PNP:Mg2+ complex

Cheng, C.Y., Taylor, S.S.

(2010) Nat Chem Biol 6: 821-828

Released	2010-10-06
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	Cardiac phospholamban (protein) cAMP-dependent protein kinase catalytic subunit alpha (protein)
Unique Ligands	ANP, MG, PEG

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4CWM	Download File View File

High-glycosylation crystal structure of the bifunctional endonuclease (AtBFN2) from Arabidopsis thaliana

Yu, T.-F., Maestre-Reyna, M., Ko, C.-Y., Ko, T.-P., Sun, Y.-J., Lin, T.-Y., Shaw, J.-F., Wang, A.H.-J.

(2014) PLoS One 9: 05821

Released	2014-07-23
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Arabidopsis thaliana
Macromolecule	ENDONUCLEASE 2 (protein)
Unique Ligands	ZN
Unique branched monosaccharides	BMA, MAN, NAG

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4CXO	Download File View File

bifunctional endonuclease in complex with ssDNA

Yu, T.-F., Maestre-Reyna, M., Ko, C.-Y., Ko, T.-P., Sun, Y.-J., Lin, T.-Y., Shaw, J.-F., Wang, A.H.-J.

(2014) PLoS One 9: 05821

Released	2014-07-23
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Arabidopsis thaliana
Macromolecule	ENDONUCLEASE 2 (protein)
Unique Ligands	D5M, SO4, TMP, ZN
Unique branched monosaccharides	BMA, MAN, NAG

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4CXP	Download File View File

Structure of bifunctional endonuclease (AtBFN2) from Arabidopsis thaliana in complex with sulfate

Yu, T.-F., Maestre-Reyna, M., Ko, C.-Y., Ko, T.-P., Sun, Y.-J., Lin, T.-Y., Shaw, J.-F., Wang, A.H.-J.

(2014) PLoS One 9: 05821

Released	2014-07-23
Method	X-RAY DIFFRACTION 1.22 Å
Organisms	Arabidopsis thaliana
Macromolecule	ENDONUCLEASE 2 (protein)
Unique Ligands	1PE, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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4CXV	Download File View File

Structure of bifunctional endonuclease (AtBFN2) in complex with phosphate.

Yu, T.-F., Maestre-Reyna, M., Ko, C.-Y., Ko, T.-P., Sun, Y.-J., Lin, T.-Y., Shaw, J.-F., Wang, A.H.-J.

(2014) PLoS One 9: 05821

Released	2014-07-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Arabidopsis thaliana
Macromolecule	ENDONUCLEASE 2 (protein)
Unique Ligands	NAG, PO4, ZN
Unique branched monosaccharides	BMA, MAN, NAG

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4FFV	Download File View File

Crystal Structure of Dipeptidyl Peptidase IV (DPP4, DPP-IV, CD26) in Complex with 11A19 Fab

Wang, Z., Sudom, A., Walker, N.P., Min, X.

To be published

Released	2012-12-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	11A19 Fab heavy chain (protein) 11A19 Fab light chain (protein) Dipeptidyl peptidase 4 (protein)

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4FFW	Download File View File

Crystal Structure of Dipeptidyl Peptidase IV (DPP4, DPP-IV, CD26) in Complex with Fab + sitagliptin

Wang, Z., Sudom, A., Walker, N.P., Min, X.

To be published

Released	2012-12-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Dipeptidyl peptidase 4 (protein) Fab heavy chain (protein) Fab light chain (protein)
Unique Ligands	715

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4NHJ	Download File View File

Crystal structure of Klebsiella pneumoniae RstA DNA-binding domain in complex with RstA box

Li, Y.C., Hsiao, C.D.

(2014) Nucleic Acids Res 42: 8777-8788

Released	2014-07-16
Method	X-RAY DIFFRACTION 2.701 Å
Organisms	Klebsiella pneumoniae
Macromolecule	DNA-binding transcriptional regulator RstA (protein) 5'-D(CPAPGPGPGPAPGPTPAPAPCPGPGPAPAPTPGPTPAPCPAPAPC)-3' (nucleic acid) 5'-D(GPGPTPTPGPTPAPCPAPTPTPCPCPGPTPTPAPCPTPCPCPCPT)-3' (nucleic acid)

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4NIC	Download File View File

Crystal structure of Klebsiella pneumoniae RstA BeF3-activated N-terminal receiver domain

Li, Y.C., Hsiao, C.D.

(2014) Nucleic Acids Res 42: 8777-8788

Released	2014-07-16
Method	X-RAY DIFFRACTION 3.18 Å
Organisms	Klebsiella pneumoniae
Macromolecule	DNA-binding transcriptional regulator RstA (protein)
Unique Ligands	BEF, MG

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4Y3I	Download File View File

PAS-GAF fragment from Deinococcus radiodurans BphP assembled with BV - Y307S, low dose

Li, F., Burgie, E.S., Yu, T., Heroux, A., Schatz, G.C., Vierstra, R.D., Orville, A.M.

(2015) J Am Chem Soc 137: 2792-2795

Released	2015-05-20
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Macromolecule	Bacteriophytochrome (protein)
Unique Ligands	LBV

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4Y5F	Download File View File

PAS-GAF fragment from Deinococcus radiodurans BphP assembled with BV - Y307S, high dose

Li, F., Burgie, E.S., Yu, T., Heroux, A., Schatz, G.C., Vierstra, R.D., Orville, A.M.

(2015) J Am Chem Soc 137: 2792-2795

Released	2015-05-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Macromolecule	Bacteriophytochrome (protein)
Unique Ligands	LBV

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5JJA	Download File View File

Crystal structure of a PP2A B56gamma/BubR1 complex

Wang, Z., Wang, J., Rao, Z., Xu, W.

(2016) Protein Cell 7: 516-526

Released	2016-07-13
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta (protein) Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform (protein)

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6IGO	Download File View File

Crystal structure of myelin protein zero-like protein 1 (MPZL1)

Yu, T.

(2018) Biochem Biophys Res Commun 506: 883-890

Released	2018-11-28
Method	X-RAY DIFFRACTION 2.746 Å
Organisms	Homo sapiens
Macromolecule	Myelin protein zero-like protein 1 (protein)

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6IGT	Download File View File

MPZL1 mutant - V145G, Q146K, P147T and G148S

Yu, T.

(2018) Biochem Biophys Res Commun 506: 883-890

Released	2018-11-28
Method	X-RAY DIFFRACTION 2.404 Å
Organisms	Homo sapiens
Macromolecule	Myelin protein zero-like protein 1 (protein)

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6IGW	Download File View File

MPZL1 mutant - S86G, V145G, Q146K,P147T,G148S

Yu, T.

(2018) Biochem Biophys Res Commun 506: 883-890

Released	2018-11-28
Method	X-RAY DIFFRACTION 1.979 Å
Organisms	Homo sapiens
Macromolecule	Myelin protein zero-like protein 1 (protein)

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6INE	Download File View File

Crystal Structure of human ASH1L-MRG15 complex

Hou, P., Huang, C., Liu, C.P., Yu, T., Yin, Y., Zhu, B., Xu, R.M.

(2019) Structure 27: 837

Released	2019-03-20
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase ASH1L (protein) Mortality factor 4-like protein 1 (protein)
Unique Ligands	GOL, SAM, ZN

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6JKY	Download File View File

Crystal structure of MvcA-UBE2N-Ub complex from Legionella pneumophila

Ouyang, S.Y., Guan, H.

(2020) EMBO J 39: e102806-e102806

Released	2019-12-18
Method	X-RAY DIFFRACTION 2.454 Å
Organisms	Homo sapiens Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Schistosoma margrebowiei
Macromolecule	MvcA (protein) Ub (protein) Ubiquitin-conjugating enzyme E2 N (protein)

1 to 25 of 38 Structures

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