RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "de Val, N."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 81 Structures.

Refinements

Structure Determination Methodology

experimental (81)

Scientific Name of Source Organism

	Homo sapiens (47)
	Human immunodeficiency virus 1 (21)
	Equus caballus (10)
	Escherichia phage T7 (10)
	Mus musculus (10)
	synthetic construct (7)
	Severe acute respiratory syndrome coronavirus 2 (5)
	Macaca mulatta (4)
	Oryctolagus cuniculus (4)
	Ebola virus - Mayinga, Zaire, 1976 (3)

More...

Taxonomy

	Eukaryota (67)
	Riboviria (30)
	Duplodnaviria (10)
	other sequences (7)
	Bacteria (3)

Experimental Method

	ELECTRON MICROSCOPY (50)
	X-RAY DIFFRACTION (31)

Polymer Entity Type

	Protein (81)
	DNA (21)
	RNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (7)
	2.0 - 2.5 (7)
	2.5 - 3.0 (7)
	3.0 - 3.5 (15)
	3.5 - 4.0 (15)
	4.0 - 4.5 (17)
	> 4.5 (11)

Release Date

	2005 - 2009 (10)
	2010 - 2014 (1)
	2015 - 2019 (31)
	2020 - 2024 (39)

Enzyme Classification Name

	Hydrolases (22)
	Transferases (19)
	Lyases (4)

Membrane Protein Annotation

	mpstruc (5)
	OPM (2)
	MemProtMD (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (45)
	Cyclic (23)
	Octahedral (10)
	Dihedral (2)
	Helical (1)

SCOP Classification

	All alpha proteins (15)
	All beta proteins (12)
	Artifacts (3)

AllSelected

1 to 25 of 81 Structures

Page 1 of 4

Sort by

Explore in 3D

2V2I \| pdb_00002v2i	Download File View File

Wild type recombinant horse spleen apoferritin cocrystallized with haemin in acidic conditions

De Val, N., Declercq, J.P.

(2012) J Inorg Biochem 112: 77

Released	2008-06-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Equus caballus
Macromolecule	FERRITIN LIGHT CHAIN (protein)
Unique Ligands	CD, GOL, SO4

Explore in 3D

2V2J \| pdb_00002v2j	Download File View File

Wild type recombinant horse spleen apoferritin cocrystallized with haemin in basic conditions

De Val, N., Declercq, J.P.

(2012) J Inorg Biochem 112: 77

Released	2008-06-24
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Equus caballus
Macromolecule	FERRITIN LIGHT CHAIN (protein)
Unique Ligands	CD, GOL, SO4

Explore in 3D

2V2L \| pdb_00002v2l	Download File View File

Mutant (E53,56,57,60Q) recombinant horse spleen apoferritin cocrystallized with haemin in acidic conditions

De Val, N., Declercq, J.P.

(2012) J Inorg Biochem 112: 77

Released	2008-06-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Equus caballus
Macromolecule	FERRITIN LIGHT CHAIN (protein)
Unique Ligands	CD, GOL, SO4

Explore in 3D

2V2M \| pdb_00002v2m	Download File View File

Mutant (E53,56,57,60Q) recombinant horse spleen apoferritin cocrystallized with haemin in basic conditions

De Val, N., Declercq, J.P.

(2012) J Inorg Biochem 112: 77

Released	2008-06-24
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Equus caballus
Macromolecule	FERRITIN LIGHT CHAIN (protein)
Unique Ligands	CD, GOL, SO4

Explore in 3D

2V2N \| pdb_00002v2n	Download File View File

Mutant R59M recombinant horse spleen apoferritin cocrystallized with haemin in acidic conditions

De Val, N., Declercq, J.P.

(2012) J Inorg Biochem 112: 77

Released	2008-06-24
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Equus caballus
Macromolecule	FERRITIN LIGHT CHAIN (protein)
Unique Ligands	CD, GOL, SO4

Explore in 3D

2V2O \| pdb_00002v2o	Download File View File

Mutant R59M recombinant horse spleen apoferritin cocrystallized with haemin in basic conditions

De Val, N., Declercq, J.P.

(2012) J Inorg Biochem 112: 77

Released	2008-06-24
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Equus caballus
Macromolecule	FERRITIN LIGHT CHAIN (protein)
Unique Ligands	CD, GOL, SO4

Explore in 3D

2V2P \| pdb_00002v2p	Download File View File

Mutant (E53,56,57,60Q and R59M) recombinant horse spleen apoferritin cocrystallized with haemin in acidic conditions

De Val, N., Declercq, J.P.

(2012) J Inorg Biochem 112: 77

Released	2008-06-24
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Equus caballus
Macromolecule	FERRITIN LIGHT CHAIN (protein)
Unique Ligands	CD, GOL, SO4

Explore in 3D

2V2R \| pdb_00002v2r	Download File View File

Mutant (E53,56,57,60Q and R59M) recombinant horse spleen apoferritin cocrystallized with haemin in basic conditions

De Val, N., Declercq, J.P.

(2012) J Inorg Biochem 112: 77

Released	2008-06-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Equus caballus
Macromolecule	FERRITIN LIGHT CHAIN (protein)
Unique Ligands	CD, GOL, SO4

Explore in 3D

2V2S \| pdb_00002v2s	Download File View File

Mutant R59M recombinant horse spleen apoferritin crystallized in acidic conditions

De Val, N., Declercq, J.P.

(2012) J Inorg Biochem 112: 77

Released	2008-06-24
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Equus caballus
Macromolecule	FERRITIN LIGHT CHAIN (protein)
Unique Ligands	CD, GOL, SO4

Explore in 3D

2W0O \| pdb_00002w0o	Download File View File

Horse spleen apoferritin

De Val, N., Declercq, J.P.

(2012) J Inorg Biochem 112: 77

Released	2008-08-26
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Equus caballus
Macromolecule	FERRITIN LIGHT CHAIN (protein)
Unique Ligands	CD, SO4

Explore in 3D

3J5M \| pdb_00003j5m	Download File View File

Cryo-EM structure of the BG505 SOSIP.664 HIV-1 Env trimer with 3 PGV04 Fabs

Lyumkis, D., Julien, J.-P., Wilson, I.A., Ward, A.B.

(2013) Science 342: 1484-1490

Released	2013-11-13
Method	ELECTRON MICROSCOPY 5.8 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	BG505 SOSIP gp120 (protein) BG505 SOSIP gp41 (protein) PGV04 heavy chain (protein) PGV04 light chain (protein)

Explore in 3D

5ACO \| pdb_00005aco	Download File View File

Cryo-EM structure of PGT128 Fab in complex with BG505 SOSIP.664 Env trimer

Lee, J.H., Ward, A.B.

(2015) Structure 23: 1943

Released	2015-09-30
Method	ELECTRON MICROSCOPY 4.36 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HIV-1 ENVELOPE GLYCOPROTEIN (protein) PGT128 FAB (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

5CEX \| pdb_00005cex	Download File View File

Crystal Structure of Fab 32H+109L, a putative precursor of the PGT121 family of potent HIV-1 antibodies

Garces, F., Wilson, I.A.

(2015) Immunity 43: 1053-1063

Released	2015-12-23
Method	X-RAY DIFFRACTION 2.105 Å
Organisms	Homo sapiens
Macromolecule	Antibody 9H+3L Fab heavy chain (protein) Antibody 9H+3L Fab light chain (protein)
Unique Ligands	GOL, P6G, PG4, PGE

Explore in 3D

5CEY \| pdb_00005cey	Download File View File

Crystal Structure of Fab 9H+3L, a putative precursor of the PGT121 family of potent HIV-1 antibodies

Wilson, I.A., Garces, F.

(2015) Immunity 43: 1053-1063

Released	2015-12-23
Method	X-RAY DIFFRACTION 2.387 Å
Organisms	Homo sapiens
Macromolecule	Antibody 9H+3L Fab heavy chain (protein) Antibody 9H+3L Fab light chain (protein)
Unique Ligands	GOL, P6G, PE7

Explore in 3D

5CEZ \| pdb_00005cez	Download File View File

Crystal Structure of the BG505 SOSIP gp140 HIV-1 Env trimer in Complex with an early putative precursor of the PGT121 family at 3.0 Angstrom

Wilson, I.A., Garces, F.

(2015) Immunity 43: 1053-1063

Released	2015-12-23
Method	X-RAY DIFFRACTION 3.031 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Unique protein chains: 6
Unique Ligands	MAN, NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

5FEH \| pdb_00005feh	Download File View File

Crystal structure of PCT64_35B, a broadly neutralizing anti-HIV antibody

Murrell, S., Wilson, I.A.

(2017) Immunity 47: 990-1003.e9

Released	2017-08-16
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	PCT64_26 Fab heavy chain (protein) PCT64_26 Fab light chain (protein)
Unique Ligands	EDO, SO4

Explore in 3D

5JS9 \| pdb_00005js9	Download File View File

Uncleaved prefusion optimized gp140 trimer with an engineered 8-residue HR1 turn bound to broadly neutralizing antibodies 8ANC195 and PGT128

Kong, L., Wilson, I.A.

(2016) Nat Commun 7: 12040-12040

Released	2016-07-13
Method	X-RAY DIFFRACTION 6.918 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

5JSA \| pdb_00005jsa	Download File View File

Uncleaved prefusion optimized gp140 trimer with an engineered 10-residue HR1 turn bound to broadly neutralizing antibodies 8ANC195 and PGT128

Kong, L., Wilson, I.A.

(2016) Nat Commun 7: 12040-12040

Released	2016-07-13
Method	X-RAY DIFFRACTION 6.308 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

5KEL \| pdb_00005kel	Download File View File

EBOV GP in complex with variable Fab domains of IgGs c2G4 and c13C6

Pallesen, J., Murin, C.D., de Val, N., Cottrell, C.A., Hastie, K.M., Turner, H.L., Fusco, M.L., Flyak, A.I., Zeitlin, L., Crowe Jr., J.E., Andersen, K.G., Saphire, E.O., Ward, A.B.

(2016) Nat Microbiol 1: 16128-16128

Released	2016-09-07
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Ebola virus - Mayinga, Zaire, 1976 Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

5KEM \| pdb_00005kem	Download File View File

EBOV sGP in complex with variable Fab domains of IgGs c13C6 and BDBV91

Pallesen, J., Murin, C.D., de Val, N., Cottrell, C.A., Hastie, K.M., Turner, H.L., Fusco, M.L., Flyak, A.I., Zeitlin, L., Crowe Jr., J.E., Andersen, K.G., Saphire, E.O., Ward, A.B.

(2016) Nat Microbiol 1: 16128-16128

Released	2016-09-07
Method	ELECTRON MICROSCOPY 5.5 Å
Organisms	Ebola virus - Mayinga, Zaire, 1976 Homo sapiens
Macromolecule	BDBV91 variable Fab domain heavy chain (protein) BDBV91 variable Fab domain light chain (protein) Ebola secreted glycoprotein (protein) c13C6 variable Fab domain heavy chain (protein) c13C6 variable Fab domain light chain (protein)

Explore in 3D

5KEN \| pdb_00005ken	Download File View File

EBOV GP in complex with variable Fab domains of IgGs c4G7 and c13C6

Pallesen, J., Murin, C.D., de Val, N., Cottrell, C.A., Hastie, K.M., Turner, H.L., Fusco, M.L., Flyak, A.I., Zeitlin, L., Crowe Jr., J.E., Andersen, K.G., Saphire, E.O., Ward, A.B.

(2016) Nat Microbiol 1: 16128-16128

Released	2016-09-07
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Ebola virus - Mayinga, Zaire, 1976 Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

5UM8 \| pdb_00005um8	Download File View File

Crystal structure of HIV-1 envelope trimer 16055 NFL TD CC (T569G) in complex with Fabs 35022 and PGT124

Garces, F., Stanfield, R.L., Wilson, I.A.

(2017) Immunity 46: 792-803.e3

Released	2017-05-24
Method	X-RAY DIFFRACTION 3.935 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

5VN3 \| pdb_00005vn3	Download File View File

Cryo-EM model of B41 SOSIP.664 in complex with soluble CD4 (D1-D2) and fragment antigen binding variable domain of 17b

Ozorowski, G., Pallesen, J., Ward, A.B.

(2017) Nature 547: 360-363

Released	2017-07-12
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	17b Fab heavy chain (protein) 17b Fab light chain (protein) Envelope glycoprotein gp160 (protein) T-cell surface glycoprotein CD4 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

5VN8 \| pdb_00005vn8	Download File View File

Cryo-EM model of B41 SOSIP.664 in complex with fragment antigen binding variable domain of b12

Ozorowski, G., Pallesen, J., Ward, A.B., Cottrell, C.A.

(2017) Nature 547: 360-363

Released	2017-07-12
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp160 (protein) b12 Fab heavy chain (protein) b12 Fab light chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

6AVN \| pdb_00006avn	Download File View File

Crystal structure of unbound anti-HIV antibody Fab PGV19 at 2.5 A

Sarkar, A., Wilson, I.A.

(2018) Nat Commun 9: 1956-1956

Released	2018-06-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	PGV19 Fab heavy chain (protein) PGV19 Fab light chain (protein)
Unique Ligands	1PE, GOL

1 to 25 of 81 Structures

Page 1 of 4

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2V2I | pdb_00002v2i

2V2J | pdb_00002v2j

2V2L | pdb_00002v2l

2V2M | pdb_00002v2m

2V2N | pdb_00002v2n

2V2O | pdb_00002v2o

2V2P | pdb_00002v2p

2V2R | pdb_00002v2r

2V2S | pdb_00002v2s

2W0O | pdb_00002w0o

3J5M | pdb_00003j5m

5ACO | pdb_00005aco

5CEX | pdb_00005cex

5CEY | pdb_00005cey

5CEZ | pdb_00005cez

5FEH | pdb_00005feh

5JS9 | pdb_00005js9

5JSA | pdb_00005jsa

5KEL | pdb_00005kel

5KEM | pdb_00005kem

5KEN | pdb_00005ken

5UM8 | pdb_00005um8

5VN3 | pdb_00005vn3

5VN8 | pdb_00005vn8

6AVN | pdb_00006avn