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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "de la Torre, A."

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Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

	synthetic construct (6)
	Kluyveromyces lactis NRRL Y-1140 (4)
	Neisseria gonorrhoeae (4)
	Saccharomyces cerevisiae S288C (4)
	Escherichia coli K-12 (3)
	Homo sapiens (2)
	Neisseria gonorrhoeae 35/02 (2)
	Parafrankia colletiae (1)
	Streptomyces rugosporus (1)

Taxonomy

	Bacteria (11)
	Eukaryota (10)
	other sequences (6)

Experimental Method

	X-RAY DIFFRACTION (23)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (18)
	RNA (6)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (5)
	2.0 - 2.5 (7)
	2.5 - 3.0 (5)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

	2015 - 2019 (8)
	2020 - 2024 (14)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (8)
	Isomerases (1)

Symmetry Type

	Asymmetric (16)
	Cyclic (3)

AllSelected

1 to 24 of 24 Structures

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5H54	Download File View File

Mdm12 from K. lactis 1-239

Kawano, S., Quinbara, S., Endo, T.

(2018) J Cell Biol 217: 959-974

Released	2017-11-08
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	Mitochondrial distribution and morphology protein 12 (protein)

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5H55	Download File View File

Mdm12 from K. lactis

Kawano, S., Quinbara, S.

(2018) J Cell Biol 217: 959-974

Released	2017-11-08
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	Mitochondrial distribution and morphology protein 12 (protein)

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5H5A	Download File View File

Mdm12 from K. lactis (1-239), Lys residues are uniformly dimethyl modified

Kawano, S., Quinbara, S., Endo, T.

(2018) J Cell Biol 217: 959-974

Released	2017-11-08
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	Mitochondrial distribution and morphology protein 12 (protein)
Unique Ligands	6OU, K

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5H5C	Download File View File

Mdm12 from K. lactis (1-239), uniformly Lys dimethyl modified, crystallized in FOS-MEA-10

Kawano, S., Quinbara, S., Endo, T.

(2018) J Cell Biol 217: 959-974

Released	2017-11-08
Method	X-RAY DIFFRACTION 3.31 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	Mitochondrial distribution and morphology protein 12 (protein)

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6K7D	Download File View File

Crystal structure of MBPapo-Tim21 fusion protein with a 16-residue helical linker

Bala, S., Shimada, A., Kohda, D.

(2020) Biochim Biophys Acta Gen Subj 1864: 129418-129418

Released	2019-09-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12 Saccharomyces cerevisiae S288C
Macromolecule	Maltose/maltodextrin-binding periplasmic protein,Mitochondrial import inner membrane translocase subunit TIM21 (protein)

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6K7E	Download File View File

Crystal structure of MBPapo-Tim21 fusion protein with a 17-residue helical linker

Bala, S., Shimada, A., Kohda, D.

(2020) Biochim Biophys Acta Gen Subj 1864: 129418-129418

Released	2019-09-18
Method	X-RAY DIFFRACTION 1.534 Å
Organisms	Escherichia coli K-12 Saccharomyces cerevisiae S288C
Macromolecule	Maltose/maltodextrin-binding periplasmic protein,Mitochondrial import inner membrane translocase subunit TIM21 (protein)

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6K7F	Download File View File

Crystal structure of MBPholo-Tim21 fusion protein with a 17-residue helical linker

Bala, S., Shimada, A., Kohda, D.

(2020) Biochim Biophys Acta Gen Subj 1864: 129418-129418

Released	2019-09-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli K-12 Saccharomyces cerevisiae S288C
Macromolecule	Maltose/maltodextrin-binding periplasmic protein,Mitochondrial import inner membrane translocase subunit TIM21 (protein)
Unique branched monosaccharides	GLC

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6K8Q	Download File View File

Solution structure of the intermembrane space domain of the mitochondrial import protein Tim21 from S. cerevisiae

Bala, S., Shinya, S., Srivastava, A., Shimada, A., Kobayashi, N., Kojima, C., Tama, F., Miyashita, O., Kohda, D.

(2020) Biochim Biophys Acta Gen Subj 1864: 129418-129418

Released	2019-09-11
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Mitochondrial import inner membrane translocase subunit TIM21 (protein)

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6LZB	Download File View File

crystal structure of Human Methionine aminopeptidase (HsMetAP1b) in complex with AN-P2-5H-06

sandeep, C.B., Addlagatta, A.

(2021) Bioorg Chem 115: 105185-105185

Released	2021-02-24
Method	X-RAY DIFFRACTION 1.29 Å
Organisms	Homo sapiens
Macromolecule	Methionine aminopeptidase 1 (protein)
Unique Ligands	CO, EYF, GOL, MG, NA

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6LZC	Download File View File

crystal structure of Human Methionine aminopeptidase (HsMetAP1b) in complex with KV-P2-4H-05

Sandeep, C.B., Addlagatta, A.

(2021) Bioorg Chem 115: 105185-105185

Released	2021-02-24
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	Methionine aminopeptidase 1 (protein)
Unique Ligands	CO, EYL, GOL, MG, NA

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6U7Y	Download File View File

RNA hairpin structure containing one TNA nucleotide as template

Szostak, J.W., Zhang, W.

(2021) Nucleic Acids Res 49: 646-656

Released	2020-12-09
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	synthetic construct
Macromolecule	RNA (5'-R(CPUPAPUPGPCPCPUPGPCPUPG)-3') (nucleic acid) RNA (5'-R(CPUPGPCPUPGPGPCPUPAPAPGPGP(TG)PCPCPGPAPAPAPGPG)-3') (nucleic acid)
Unique Ligands	C5P

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6U7Z	Download File View File

RNA hairpin structure containing one TNA nucleotide as primer

Szostak, J.W., Zhang, W.

(2021) Nucleic Acids Res 49: 646-656

Released	2020-12-09
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	synthetic construct
Macromolecule	RNA (5'-R(CPUPAPUPGPCPCPUPGPCPUPG)-3') (nucleic acid) RNA (5'-R(CPUPGPCPUPGPGPCPUPAPAPGPGPGPCPCPGPAPAPAPGP(TG))-3') (nucleic acid)
Unique Ligands	C5P

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6U89	Download File View File

RNA duplex, bound with TNA monomer

Szostak, J.W., Zhang, W.

(2021) Nucleic Acids Res 49: 646-656

Released	2020-12-09
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	synthetic construct
Macromolecule	RNA (5'-R((LCC)P(TLN)P(LCG)PUPAPCP*A)-3') (nucleic acid)
Unique Ligands	TG

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6U8F	Download File View File

RNA hairpin, bound with TNA monomer

Szostak, J.W., Zhang, W.

(2021) Nucleic Acids Res 49: 646-656

Released	2020-12-09
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	synthetic construct
Macromolecule	RNA (5'-R(CPUPGPCPUPGPGPCPUPAPAPGPGPCPAPUPGPAPAPAPGPU)-3') (nucleic acid) RNA (5'-R(PCPUPAPUPGPCPCPUPGPCPUPG)-3') (nucleic acid)
Unique Ligands	TG

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6U8U	Download File View File

RNA duplex bound with TNA 3'-3' imidazolium dimer

Szostak, J.W., Zhang, W.

(2021) Nucleic Acids Res 49: 646-656

Released	2020-12-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	synthetic construct
Macromolecule	RNA (5'-R((LCC)P(LCC)P(LCC)P(LCG)PAPCPUPUPAPAPGPUPCPG)-3') (nucleic acid)
Unique Ligands	MG, Q1V

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7DVI	Download File View File

Crystal Structure of AbnU: An exo-specific intermolecular Diels-Alderase

Kashyap, R., Addlagatta, A.

(2021) Commun Chem

Released	2021-08-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Parafrankia colletiae
Macromolecule	AOC_like domain-containing protein (protein)
Unique Ligands	DMS, EDO

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7DVK	Download File View File

PyrI4 in complex with intermolecular Diels-Alder product

Kashyap, R., Addlagatta, A.

(2021) Commun Chem

Released	2021-08-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Streptomyces rugosporus
Macromolecule	Spiro-conjugate synthase (protein)
Unique Ligands	GOL, HOF

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8SKQ	Download File View File

RNA oligonucleotide containing an alpha-(L)-threofuranosyl nucleic acid (TNA)

Harp, J.M., Egli, M.

(2023) J Am Chem Soc 145: 19691-19706

Released	2024-02-14
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	synthetic construct
Macromolecule	TNA-containing RNA oligonucleotide (nucleic acid)

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8VBZ	Download File View File

Crystal structure of the transpeptidase domain of a S310A mutant of PBP2 from Neisseria gonorrhoeae strain H041

Stratton, C., Bala, S., Davies, C.

(2024) ACS Infect Dis 10: 1298-1311

Released	2024-03-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	Probable peptidoglycan D,D-transpeptidase PenA (protein)

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8VEN	Download File View File

Crystal structure of transpeptidase domain of PBP2 from Neisseria gonorrhoeae cephalosporin-resistant strain H041 in complex with cefoperazone

Stratton, C., Bala, S., Davies, C.

(2024) ACS Infect Dis 10: 1298-1311

Released	2024-03-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	Probable peptidoglycan D,D-transpeptidase PenA (protein)
Unique Ligands	A1ADP

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8VEP	Download File View File

Crystal structure of transpeptidase domain of PBP2 from Neisseria gonorrhoeae cephalosporin-resistant strain H041 acylated by piperacillin

Stratton, C.M., Bala, S., Davies, C.

(2024) ACS Infect Dis 10: 1298-1311

Released	2024-03-20
Method	X-RAY DIFFRACTION 2.002 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	Probable peptidoglycan D,D-transpeptidase PenA (protein)
Unique Ligands	JPP, PEG

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8VEQ	Download File View File

Crystal structure of transpeptidase domain of PBP2 from Neisseria gonorrhoeae cephalosporin-resistant strain H041 in complex with azlocillin

Stratton, C., Bala, S., Davies, C.

(2024) ACS Infect Dis 10: 1298-1311

Released	2024-03-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	Probable peptidoglycan D,D-transpeptidase PenA (protein)
Unique Ligands	59H

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9MCZ	Download File View File

Crystal structure of the transpeptidase domain of PBP2 from the Neisseria gonorrhoeae cephalosporin decreased susceptibility strain 35/02 in complex with boronate inhibitor VNRX-6884

Stratton, C.M., Bala, S., Davies, C.

(2024) bioRxiv

Released	2025-01-22
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Neisseria gonorrhoeae 35/02
Macromolecule	Penicillin-binding protein 2 (protein)
Unique Ligands	A1BJC

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9MD0	Download File View File

Crystal structure of the transpeptidase domain of PBP2 from the Neisseria gonorrhoeae cephalosporin decreased susceptibility strain 35/02 in complex with boronate inhibitor VNRX-6752

Stratton, C.M., Bala, S., Davies, C.

(2024) bioRxiv

Released	2025-01-22
Method	X-RAY DIFFRACTION 2.613 Å
Organisms	Neisseria gonorrhoeae 35/02
Macromolecule	Penicillin-binding protein 2 (protein)
Unique Ligands	A1BJB

1 to 24 of 24 Structures

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