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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = 44E

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Homo sapiens (8)
	Danio rerio (4)
	Human immunodeficiency virus 1 (2)
	Mus musculus (1)
	Nicotiana suaveolens x Nicotiana tabacum (1)
	Saccharomyces cerevisiae S288C (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (14)
	Riboviria (2)
	other sequences (1)

Experimental Method

	ELECTRON MICROSCOPY (7)
	X-RAY DIFFRACTION (7)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.5 - 3.0 (3)
	3.0 - 3.5 (3)
	3.5 - 4.0 (6)
	> 4.5 (1)

Release Date

	2015 - 2019 (10)
	2020 - 2024 (4)

Enzyme Classification Name

Oxidoreductases (2)

Membrane Protein Annotation

	MemProtMD (6)
	PDBTM (6)
	mpstruc (6)
	OPM (5)

Symmetry Type

	Asymmetric (8)
	Cyclic (6)

SCOP Classification

	All beta proteins (3)
	Small proteins (1)
	Artifacts (1)

AllSelected

1 to 14 of 14 Structures

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4XBG \| pdb_00004xbg	Download File View File

Crystal structure of human 4E10 Fab in complex with phosphatidic acid (06:0 PA): 2.73 A resolution

Irimia, A., Stanfield, R.L., Wilson, I.A.

(2016) Immunity 44: 21-31

Released	2016-02-03
Method	X-RAY DIFFRACTION 2.73 Å
Organisms	Homo sapiens
Macromolecule	4E10 Fab heavy chain (protein) 4E10 Fab light chain (protein)
Unique Ligands	44E, GOL, PO4, UNL

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4XCN \| pdb_00004xcn	Download File View File

Crystal structure of human 4E10 Fab in complex with phosphatidic acid (06:0 PA); 2.9 A resolution

Irimia, A., Stanfield, R.L., Wilson, I.A.

(2016) Immunity 44: 21-31

Released	2016-02-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	4E10 Fab heavy chain (protein) 4E10 Fab light chain (protein)
Unique Ligands	44E, GOL, PO4, UNL

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5KK4 \| pdb_00005kk4	Download File View File

Crystal Structure of the Plant Defensin NsD7 bound to Phosphatidic Acid

Kvansakul, M., Hulett, M.D., Lay, F.T.

(2016) Proc Natl Acad Sci U S A 113: 11202-11207

Released	2016-10-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Nicotiana suaveolens x Nicotiana tabacum
Macromolecule	NsD7 (protein)
Unique Ligands	44E, ACT, EDO, SO4

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5T80 \| pdb_00005t80	Download File View File

Crystal structure of 10E8 Fab in complex with the MPER epitope scaffold T117v2 and phosphatidic acid (06:0 PA)

Irimia, A., Wilson, I.A.

(2017) PLoS Pathog 13: e1006212-e1006212

Released	2017-03-08
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	10E8 EPITOPE SCAFFOLD T117V2 (protein) Antibody 10E8 FAB HEAVY CHAIN (protein) Antibody 10E8 FAB LIGHT CHAIN (protein)
Unique Ligands	44E

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6G1K \| pdb_00006g1k	Download File View File

Electron cryo-microscopy structure of the canonical TRPC4 ion channel

Vinayagam, D., Mager, T., Apelbaum, A., Bothe, A., Merino, F., Hofnagel, O., Gatsogiannis, C., Raunser, S.

(2018) Elife 7:

Released	2018-05-02
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Danio rerio
Macromolecule	Transient receptor potential cation channel subfamily c member 4a (protein)
Unique Ligands	44E, Y01

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6HCY \| pdb_00006hcy	Download File View File

human STEAP4 bound to NADP, FAD, heme and Fe(III)-NTA.

Oosterheert, W., van Bezouwen, L.S., Rodenburg, R.N.P., Forster, F., Mattevi, A., Gros, P.

(2018) Nat Commun 9: 4337-4337

Released	2018-10-24
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Metalloreductase STEAP4 (protein)
Unique Ligands	44E, FAD, HEM, NAG, NAP

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6HD1 \| pdb_00006hd1	Download File View File

human STEAP4 bound to NADPH, FAD and heme.

Oosterheert, W., van Bezouwen, L.S., Rodenburg, R.N.P., Forster, F., Mattevi, A., Gros, P.

(2018) Nat Commun 9: 4337-4337

Released	2018-10-24
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Metalloreductase STEAP4 (protein)
Unique Ligands	44E, FAD, HEM, NAG, NAP

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6KYL \| pdb_00006kyl	Download File View File

Crystal Structure of Phosphatidic acid Transporter Ups1/Mdm35 in Complex with (2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate

Lu, J., Chan, K.C., Zhai, Y., Fan, J., Sun, F.

(2020) Commun Biol 3: 468-468

Released	2019-10-02
Method	X-RAY DIFFRACTION 3.55 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Mitochondrial distribution and morphology protein 35 (protein) Protein UPS1, mitochondrial (protein)
Unique Ligands	44E

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6O3J \| pdb_00006o3j	Download File View File

Crystal structure of the Fab fragment of the human HIV-1 neutralizing antibody PGZL1 in complex with its MPER peptide epitope (region 671-683 of HIV-1 gp41) and phosphatidic acid (06:0 PA)

Irimia, A., Wilson, I.A.

(2019) Nat Commun 10: 5389-5389

Released	2019-12-04
Method	X-RAY DIFFRACTION 3.416 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	MPER peptide, region 671-683 of HIV-1 gp41 (protein) PGZL1 heavy chain (protein) PGZL1 light chain (protein)
Unique Ligands	44E, MPD

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6O3U \| pdb_00006o3u	Download File View File

Crystal structure of the Fab fragment of the human HIV-1 neutralizing antibody PGZL1.H4K3 in complex with 06:0 PA

Irimia, A., Wilson, I.A.

(2019) Nat Commun 10: 5389-5389

Released	2019-12-04
Method	X-RAY DIFFRACTION 3.105 Å
Organisms	Homo sapiens
Macromolecule	PGZL1.H4K3 heavy chain (protein) PGZL1.H4K3 light chain (protein)
Unique Ligands	44E, GOL, SO4

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6VPX \| pdb_00006vpx	Download File View File

Nanodisc of full-length HIV-1 Envelope glycoprotein clone AMC011 in complex with one PGT151 Fab and three 10E8 Fabs

Rantalainen, K., Ward, A.B.W.

(2020) Cell Rep 31: 107583-107583

Released	2020-04-22
Method	ELECTRON MICROSCOPY 5 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Unique protein chains: 7
Unique Ligands	44E, NAG
Unique branched monosaccharides	BMA, FUC, GAL, MAN, NAG

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7B05 \| pdb_00007b05	Download File View File

TRPC4 in complex with inhibitor GFB-8749

Vinayagam, D., Quentin, D., Sistel, O., Merino, F., Stabrin, M., Hofnagel, O., Ledeboer, M.W., Malojcic, G., Raunser, S.

(2020) Elife 9:

Released	2020-12-09
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Danio rerio
Macromolecule	Transient receptor potential cation channel subfamily c member 4a (protein)
Unique Ligands	44E, CA, SJQ

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7B0S \| pdb_00007b0s	Download File View File

TRPC4 in complex with inhibitor GFB-8438

Vinayagam, D., Quentin, D., Sistel, O., Merino, F., Stabrin, M., Hofnagel, O., Ledeboer, M.W., Malojcic, G., Raunser, S.

(2020) Elife 9:

Released	2020-12-09
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Danio rerio
Macromolecule	Transient receptor potential cation channel subfamily c member 4a (protein)
Unique Ligands	44E, CA, S9Q

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7B1G \| pdb_00007b1g	Download File View File

TRPC4 in complex with Calmodulin

Vinayagam, D., Quentin, D., Sistel, O., Merino, F., Stabrin, M., Hofnagel, O., Ledeboer, M.W., Malojcic, G., Raunser, S.

(2020) Elife 9:

Released	2020-12-09
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Danio rerio Mus musculus
Macromolecule	Calmodulin-1 (protein) Transient receptor potential cation channel subfamily c member 4a (protein)
Unique Ligands	44E, CA

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4XBG | pdb_00004xbg

Crystal structure of human 4E10 Fab in complex with phosphatidic acid (06:0 PA): 2.73 A resolution

4XCN | pdb_00004xcn

Crystal structure of human 4E10 Fab in complex with phosphatidic acid (06:0 PA); 2.9 A resolution

5KK4 | pdb_00005kk4

Crystal Structure of the Plant Defensin NsD7 bound to Phosphatidic Acid

5T80 | pdb_00005t80

Crystal structure of 10E8 Fab in complex with the MPER epitope scaffold T117v2 and phosphatidic acid (06:0 PA)

6G1K | pdb_00006g1k

Electron cryo-microscopy structure of the canonical TRPC4 ion channel

6HCY | pdb_00006hcy

human STEAP4 bound to NADP, FAD, heme and Fe(III)-NTA.

6HD1 | pdb_00006hd1

human STEAP4 bound to NADPH, FAD and heme.

6KYL | pdb_00006kyl

Crystal Structure of Phosphatidic acid Transporter Ups1/Mdm35 in Complex with (2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate

6O3J | pdb_00006o3j

Crystal structure of the Fab fragment of the human HIV-1 neutralizing antibody PGZL1 in complex with its MPER peptide epitope (region 671-683 of HIV-1 gp41) and phosphatidic acid (06:0 PA)

6O3U | pdb_00006o3u

Crystal structure of the Fab fragment of the human HIV-1 neutralizing antibody PGZL1.H4K3 in complex with 06:0 PA

6VPX | pdb_00006vpx

Nanodisc of full-length HIV-1 Envelope glycoprotein clone AMC011 in complex with one PGT151 Fab and three 10E8 Fabs

7B05 | pdb_00007b05

TRPC4 in complex with inhibitor GFB-8749

7B0S | pdb_00007b0s

TRPC4 in complex with inhibitor GFB-8438

7B1G | pdb_00007b1g

TRPC4 in complex with Calmodulin

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

4XBG | pdb_00004xbg

4XCN | pdb_00004xcn

5KK4 | pdb_00005kk4

5T80 | pdb_00005t80

6G1K | pdb_00006g1k

6HCY | pdb_00006hcy

6HD1 | pdb_00006hd1

6KYL | pdb_00006kyl

6O3J | pdb_00006o3j

6O3U | pdb_00006o3u

6VPX | pdb_00006vpx

7B05 | pdb_00007b05

7B0S | pdb_00007b0s

7B1G | pdb_00007b1g