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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = 8YL

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Search Summary

This query matches 4 Structures.

Refinements

Structure Determination Methodology

experimental (4)

Scientific Name of Source Organism

	Escherichia coli (2)
	Klebsiella pneumoniae (2)

Taxonomy

Bacteria (4)

Experimental Method

X-RAY DIFFRACTION (4)

Polymer Entity Type

Protein (4)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (1)

Release Date

	2015 - 2019 (2)
	2020 - 2024 (2)

Enzyme Classification Name

Hydrolases (3)

Symmetry Type

	Asymmetric (3)
	Cyclic (1)

SCOP Classification

	Alpha and beta proteins (a+b) (2)
	Artifacts (1)
	Multi-domain proteins (alpha and beta) (1)

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1 to 4 of 4 Structures

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5N0H	Download File View File

Crystal structure of NDM-1 in complex with hydrolyzed meropenem - new refinement

Raczynska, J.E., Shabalin, I.G., Jaskolski, M., Minor, W., Wlodawer, A., King, D.T., Strynadka, N.C.J.

(2018) Drug Resist Updat 40: 1-12

Released	2017-04-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	8YL, GOL, SO4, ZN

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5YPM	Download File View File

Crystal structure of NDM-1 bound to hydrolyzed meropenem representing an EI1 complex

Feng, H., Wang, D., Liu, W.

(2017) Nat Commun 8: 2242-2242

Released	2018-02-21
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Escherichia coli
Macromolecule	Metallo-beta-lactamase NDM-1 (protein)
Unique Ligands	8YL, SO4, ZN

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6ZW2	Download File View File

Crystal structure of OXA-10loop48 in complex with hydrolyzed meropenem

Tassone, G., Di Pisa, F., Benvenuti, M., De Luca, F., Pozzi, C., Mangani, S., Docquier, J.D.

To be published

Released	2021-08-11
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli
Macromolecule	Beta-lactamase (protein)
Unique Ligands	8YL, CL, EDO, SO4

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7LLB	Download File View File

Crystal structure of KPC-2 S70G/T215P mutant with hydrolyzed meropenem

Furey, I., Palzkill, T., Sankaran, B., Hu, L., Prasad, B.V.V.

(2021) J Biol Chem 296: 100799-100799

Released	2021-05-26
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Carbapenem-hydrolyzing beta-lactamase KPC (protein)
Unique Ligands	8YL

1 to 4 of 4 Structures

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Structure Determination Methodology

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