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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

QUERY: Chemical ID(s) = DZ4

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This query matches 49 Structures.

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3JAA	Download File View File

HUMAN DNA POLYMERASE ETA in COMPLEX WITH NORMAL DNA AND INCO NUCLEOTIDE (NRM)

Lau, W.C.Y., Li, Y., Zhang, Q., Huen, M.S.Y.

(2015) Sci Rep 5: 15759-15759

Released	2015-12-23
Method	ELECTRON MICROSCOPY 22 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(TCPAPTPTPAPTPGPAPCPGPCPT)-3 (nucleic acid) DNA (5'-D(TPAPGPCPGPTPCPAPT)-3') (nucleic acid)
Unique Ligands	DZ4, GOL, MG

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3MR2	Download File View File

Human DNA polymerase eta in complex with normal DNA and incoming nucleotide (Nrm)

Biertumpfel, C., Zhao, Y., Ramon-Maiques, S., Gregory, M.T., Lee, J.Y., Yang, W.

(2010) Nature 465: 1044-1048

Released	2010-06-30
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(TCPAPTPTPAPTPGPAPCPGPCPT)-3') (nucleic acid) DNA (5'-D(TPAPGPCPGPTPCPAPT)-3') (nucleic acid)
Unique Ligands	DZ4, GOL, MG

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3MR3	Download File View File

Human DNA polymerase eta - DNA ternary complex with the 3'T of a CPD in the active site (TT1)

Biertumpfel, C., Zhao, Y., Ramon-Maiques, S., Gregory, M.T., Lee, J.Y., Yang, W.

(2010) Nature 465: 1044-1048

Released	2010-06-30
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(CPAP(TTD)PAPTPGPAPCPGPCPT)-3') (nucleic acid) DNA (5'-D(CPAPGPCPGPTPCPAPT)-3') (nucleic acid)
Unique Ligands	DZ4, GOL, MG

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3SI8	Download File View File

Human DNA polymerase eta - DNA ternary complex with the 5'T of a CPD in the active site (TT2)

Biertumpfel, C., Zhao, Y., Kondo, Y., Ramon-Maiques, S., Gregory, M., Lee, J.Y., Masutani, C., Lehmann, A.R., Hanaoka, F., Yang, W.

(2010) Nature 465: 1044-1048

Released	2011-08-03
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(TPAAPCP(TTD)PAPTPGPAPCPGPC)-3') (nucleic acid) DNA (5'-D(TPGPCPGPTPCPAPTP*A)-3') (nucleic acid)
Unique Ligands	3D1, CO, DTT, DZ4, EDO, GOL, MG

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4DL7	Download File View File

Human DNA polymerase eta fails to extend primer 2 nucleotide after cisplatin crosslink (Pt-GG4).

Zhao, Y., Biertumpfel, C., Gregory, M., Hua, Y., Hanaoka, F., Yang, W.

(2012) Proc Natl Acad Sci U S A 109: 7269-7274

Released	2012-05-09
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(TPAPCPTPCPGPGPTPCPAPCPT)-3') (nucleic acid) DNA (5'-D(TPAPGPTPGPAPCPCP*G)-3') (nucleic acid)
Unique Ligands	CPT, DZ4, GOL

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4IRD	Download File View File

Structure of Polymerase-DNA complex

Nair, D.T., Sharma, A.

(2013) Nucleic Acids Res 41: 5104-5114

Released	2013-04-10
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Escherichia coli K-12
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(CPTPAPGPGPGPTPCPCPTPAPGPGPAPCPCPC)-3') (nucleic acid) DNA (5'-D(GPGPGPTPCPCPTPAPGPGPAPCPCPC)-3') (nucleic acid) DNA (5'-D(TPCPTPTPGPGPGPTPCPCPTPAPGPGPAPCPCP*C)-3') (nucleic acid)
Unique Ligands	DZ4, MG

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4J9O	Download File View File

Human DNA polymerase eta-DNA ternary complex: primer extension after a T:G mispair

Zhao, Y., Gregory, M., Biertumpfel, C., Hua, Y., Hanaoka, F., Yang, W.

(2013) Proc Natl Acad Sci U S A 110: 8146-8151

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.597 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(TAPCPGPTPCPAPTPG)-3') (nucleic acid) DNA (5'-D(TAPCPTPTPAPTPGPAPCPGP*T)-3') (nucleic acid)
Unique Ligands	DZ4, EDO, GOL, MG

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4O3O	Download File View File

Crystal structure of human polymerase eta inserting datp opposite an 8-oxog containing dna template

Patra, A., Egli, M.

(2014) J Biol Chem 289: 16867-16882

Released	2014-04-30
Method	X-RAY DIFFRACTION 1.698 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTP(8OG)PAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	DZ4, GOL, MG

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4RNM	Download File View File

Crystal structure of human polymerase eta inserting dAMPnPP opposite DNA template containing an abasic site

Patra, A., Egli, M.

(2015) J Biol Chem 290: 8028-8038

Released	2015-02-18
Method	X-RAY DIFFRACTION 2.144 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) DNA Primar: AGCGTCAT (nucleic acid) DNA Template: CAT(3DR)ATGACGCT (nucleic acid)
Unique Ligands	DZ4, GOL, MG

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5DG8	Download File View File

CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA INSERTING dAMPNPP ACROSS A DNA TEMPLATE CONTAINING 1,N6-ETHENODEOXYADENOSINE LESION

Patra, A., Egli, M.

(2016) J Biol Chem 291: 14134-14145

Released	2016-06-08
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTP(EDA)PAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	DZ4, GOL, MG

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5DQG	Download File View File

Crystal Structure of Human DNA Polymerase Eta Inserting dAMPNPP Opposite O4-Ethylthymidine

Patra, A., OFlaherty, D.K., Egli, M.

(2016) Chem Sci 7: 4896-4904

Released	2016-08-10
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTP(5EJ)PAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	DZ4, GOL, MG

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5F9L	Download File View File

CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA INSERTING dAMPNPP ACROSS A DNA TEMPLATE CONTAINING 1,N2-ETHENODEOXYGUANOSINE LESION

Patra, A., Egli, M.

To be published

Released	2016-12-21
Method	X-RAY DIFFRACTION 2.592 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPCPGPTPCPAPT)-3') (nucleic acid) DNA (5'-D(CPAPTP(GNE)PAPTPGPAPCPGPCPT)-3') (nucleic acid)
Unique Ligands	DZ4, GOL, MG

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5T14	Download File View File

DNA polymerase kappa extending beyond a bulky major benzo[a]pyrene adduct

Jha, V.K., Ling, H.

(2017) DNA Repair (Amst) 49: 43-50

Released	2016-12-21
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens unidentified
Macromolecule	DNA polymerase kappa (protein) DNA (nucleic acid)
Unique Ligands	DZ4, MG, PGE

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5W2C	Download File View File

Structure of human DNA polymerase kappa in complex with Lucidin-derived DNA adduct and incoming dAMPNPP

Jha, V.K., Ling, H.

(2017) Chem Res Toxicol 30: 2023-2032

Released	2017-10-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens unidentified
Macromolecule	DNA polymerase kappa (protein) DNA (5'-D(CPTPAPTP(LDG)PTPCPGPAPTPCPCPG)-3') (nucleic acid) DNA (5'-D(PCPGPGPAPTPCPGPAPC)-3') (nucleic acid)
Unique Ligands	DZ4, EDO, GOL, MG, PEG

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6BS1	Download File View File

Crystal Structure of Human DNA polymerase kappa in complex with DNA containing the major cisplatin lesion

Jha, V.K., Ling, H.

(2018) J Mol Biol 430: 1577-1589

Released	2018-08-22
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase kappa (protein) DNA (5'-D(TPAPCPTPGPGPTPAPTPGPTPAPT)-3') (nucleic acid) DNA (5'-D(PAPTPAPCPAPTPAPCPC)-3') (nucleic acid)
Unique Ligands	CPT, DZ4, IOD, MG

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6CST	Download File View File

Structure of human DNA polymerase kappa with DNA

Jha, V., Ling, H.

(2018) Sci Rep 8: 15125-15125

Released	2019-01-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase kappa (protein) DNA (5'-D(PAPTPAPCPAPTPAPCPC)-3') (nucleic acid) DNA (5'-D(PTPAPCPTPGPGPTPAPTPGPTPAPT)-3') (nucleic acid)
Unique Ligands	CL, DZ4, EDO, IOD, K, MG, PEG, PGE

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6CUB	Download File View File

Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable ATP and MANGANESE

Koag, M.-C., Lee, S.

To be published

Released	2019-03-27
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase beta (protein) DNA (5'-D(CPCPGPAPCP(CGM)PTPCPGPCPAPTPCPAPGPC)-3') (nucleic acid) DNA (5'-D(GPCPTPGPAPTPGPCPGPA)-3') (nucleic acid) DNA (5'-D(PGPTPCPGP*G)-3') (nucleic acid)
Unique Ligands	DZ4, MN, NA

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6D0Z	Download File View File

Polymerase Eta cytarabine (AraC) extension ternary complex

Rechkoblit, O., Aggarwal, A.K.

(2018) Sci Rep 8: 12702-12702

Released	2018-09-05
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(CPAPTPTPGPCPAPGPTPGPCPT)-3') (nucleic acid) DNA/RNA (5'-D(APGPCPAPCPTPG)-R(P(CAR))-3') (nucleic acid)
Unique Ligands	DZ4, GOL, MG

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6DSU	Download File View File

Bst DNA polymerase I pre-insertion complex structure

Chim, N., Jackson, L.N., Chaput, J.C.

(2018) Elife 7:

Released	2018-10-31
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	DNA polymerase I (protein) DNA (5'-D(GPCPGPAPTPCPAPCPGPT)-3') (nucleic acid) DNA (5'-D(PAPCPGPTPGPAPTPCPGPCP*A)-3') (nucleic acid)
Unique Ligands	DZ4, MG, SO4

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6E3X	Download File View File

Structure of human DNA polymerase beta complexed with 8OA in the template base paired with incoming non-hydrolyzable ATP

Koag, M.-C., Lee, S.

To be published

Released	2019-04-03
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase beta (protein) DNA (5'-D(CPCPGPAPCP(A38) PTPCPGPCPAPTPCPAPGPC)-3') (nucleic acid) DNA (5'-D(GPCPTPGPAPTPGPCPGPA)-3') (nucleic acid) DNA (5'-D(PGPTPCPGP*G)-3') (nucleic acid)
Unique Ligands	DZ4, MG, NA

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6M7P	Download File View File

Human DNA polymerase eta extension complex with cdA at the -2 position

Gregory, M.T., Yang, W.

(2018) Proc Natl Acad Sci U S A 115: 10660-10665

Released	2018-09-12
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APGPTPGPTPGPTPG)-3') (nucleic acid) DNA (5'-D(CPAPTPTPCP(02I)PCPAPCPAPCPT)-3') (nucleic acid)
Unique Ligands	DZ4, GOL, MG

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6M7V	Download File View File

Human DNA polymerase eta extension complex with cdA at the -1 position

Weng, P., Gao, Y., Yang, W.

(2018) Proc Natl Acad Sci U S A 115: 10660-10665

Released	2018-09-12
Method	X-RAY DIFFRACTION 3.062 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(P(02I)PCPTPCPAPCPAPCPT)-3') (nucleic acid) DNA (5'-D(PGPTPGPTPGPAPGP*T)-3') (nucleic acid)
Unique Ligands	DZ4, MN, NI

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6P1N	Download File View File

Pre-catalytic ternary complex of human DNA Polymerase Mu with 1-nt gapped substrate containing template 8OG and bound incoming dAMPNPP

Kaminski, A.M., Pedersen, L.C., Bebenek, K., Chiruvella, K.K., Ramsden, D.A., Kunkel, T.A.

(2019) Nucleic Acids Res 47: 9410-9422

Released	2019-09-04
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCP(8OG)PTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPA)-3') (nucleic acid) DNA (5'-D(PGPCPCP*G)-3') (nucleic acid)
Unique Ligands	CL, DZ4, EDO, EPE, MG, NA

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6Q02	Download File View File

Polymerase Eta-catalyzed insertion of the mismatched A opposite template cytarabine (AraC) residue

Rechkoblit, O., Aggarwal, A.K.

(2019) Sci Rep 9: 16400-16400

Released	2019-11-20
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) DNA Primer Strand (nucleic acid) DNA template containing a cytarabin (AraC) residue (nucleic acid)
Unique Ligands	DZ4, GOL, MG

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6TX0	Download File View File

Crystal structure of tetrameric human D137N-SAMHD1 (residues 109-626) with XTP, dAMPNPP and Mg

Morris, E.R., Kunzelmann, S., Caswell, S.J., Arnold, L.H., Purkiss, A.G., Kelly, G., Taylor, I.A.

(2020) Nat Commun 11: 3165-3165

Released	2020-06-24
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 (protein)
Unique Ligands	CZF, DZ4, FE, MG