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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = G5A

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Bradyrhizobium diazoefficiens USDA 110 (3)
	Escherichia coli K-12 (2)
	Mycolicibacterium thermoresistibile ATCC 19527 (2)
	Agrobacterium fabrum str. C58 (1)
	Aquifex aeolicus VF5 (1)
	Mycobacterium tuberculosis (1)

Taxonomy

Bacteria (9)

Experimental Method

X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (5)
	2.5 - 3.0 (1)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (3)
	2015 - 2019 (1)
	2020 - 2024 (3)

Enzyme Classification Name

Ligases (8)

Symmetry Type

	Cyclic (6)
	Asymmetric (3)

SCOP Classification

	Alpha and beta proteins (a+b) (1)
	All alpha proteins (1)
	Artifacts (1)

AllSelected

1 to 9 of 9 Structures

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3HXV \| pdb_00003hxv	Download File View File

Crystal Structure of catalytic fragment of E. coli AlaRS in complex with GlySA

Guo, M., Yang, X.-L., Schimmel, P.

(2009) Nature 462: 808-812

Released	2009-12-15
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Escherichia coli K-12
Macromolecule	Alanyl-tRNA synthetase (protein)
Unique Ligands	BME, EPE, G5A, HED

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3HY0 \| pdb_00003hy0	Download File View File

Crystal Structure of catalytic fragment of E. coli AlaRS G237A in complex with GlySA

Guo, M., Yang, X.-L., Schimmel, P.

(2009) Nature 462: 808-812

Released	2009-12-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	Alanyl-tRNA synthetase (protein)
Unique Ligands	EPE, G5A, HED

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3MF1 \| pdb_00003mf1	Download File View File

Crystal structure of class II aaRS homologue (Bll0957) complexed with an analogue of glycyl adenylate

Weygand-Durasevic, I., Mocibob, M., Ivic, N., Bilokapic, S., Maier, T., Luic, M., Ban, N.

(2010) Proc Natl Acad Sci U S A 107: 14585-14590

Released	2010-07-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bradyrhizobium diazoefficiens USDA 110
Macromolecule	Bll0957 protein (protein)
Unique Ligands	G5A, ZN

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4H2T \| pdb_00004h2t	Download File View File

Crystal structure of Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with cognate carrier protein and an analogue of glycyl adenylate

Luic, M., Weygand-Durasevic, I., Ivic, N., Mocibob, M.

(2013) Structure 21: 614-626

Released	2013-03-06
Method	X-RAY DIFFRACTION 2.44 Å
Organisms	Bradyrhizobium diazoefficiens USDA 110
Macromolecule	Amino acid--[acyl-carrier-protein] ligase 1 (protein) Aminoacyl carrier protein 1 (protein)
Unique Ligands	G5A, PNS, SO4, ZN

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4H2X \| pdb_00004h2x	Download File View File

Crystal structure of engineered Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with carrier protein from Agrobacterium tumefaciens and an analogue of glycyl adenylate

Luic, M., Weygand-Durasevic, I., Ivic, N., Mocibob, M.

(2013) Structure 21: 614-626

Released	2013-03-06
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Agrobacterium fabrum str. C58 Bradyrhizobium diazoefficiens USDA 110
Macromolecule	Amino acid--[acyl-carrier-protein] ligase 1 (protein) Aminoacyl carrier protein (protein)
Unique Ligands	CL, G5A, PNS, ZN

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5F5W \| pdb_00005f5w	Download File View File

Crystal structure of the alpha subunit of glycyl tRNA synthetase (GlyRS) from Aquifex aeolicus in complex with an analog of glycyl adenylate (Gly-SA)

Valencia-Sanchez, M.I., Torres-Larios, A.

(2016) J Biological Chem 291: 14430-14446

Released	2016-05-11
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Glycine--tRNA ligase alpha subunit (protein)
Unique Ligands	G5A

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8SLG \| pdb_00008slg	Download File View File

Crystal Structure of Glycine tRNA ligase from Mycobacterium thermoresistibile (glycyl adenylate bound)

Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2023-05-03
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mycolicibacterium thermoresistibile ATCC 19527
Macromolecule	Glycine--tRNA ligase (protein)
Unique Ligands	G5A, GOL, MG, ZN

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8U2P \| pdb_00008u2p	Download File View File

Crystal Structure of Glycine--tRNA ligase from Mycobacterium tuberculosis (G5A bound)

Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2023-09-13
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Glycine--tRNA ligase (protein)
Unique Ligands	CL, EDO, G5A, IMD, MES, MG

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8U2Q \| pdb_00008u2q	Download File View File

Crystal Structure of Glycine--tRNA ligase active site chimera from Mycobacterium thermoresistibile/tuberculosis (G5A bound)

Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2023-09-13
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Mycolicibacterium thermoresistibile ATCC 19527
Macromolecule	Glycine--tRNA ligase (protein)
Unique Ligands	CL, EDO, G5A, NA, ZN

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3HXV | pdb_00003hxv

Crystal Structure of catalytic fragment of E. coli AlaRS in complex with GlySA

3HY0 | pdb_00003hy0

Crystal Structure of catalytic fragment of E. coli AlaRS G237A in complex with GlySA

3MF1 | pdb_00003mf1

Crystal structure of class II aaRS homologue (Bll0957) complexed with an analogue of glycyl adenylate

4H2T | pdb_00004h2t

Crystal structure of Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with cognate carrier protein and an analogue of glycyl adenylate

4H2X | pdb_00004h2x

Crystal structure of engineered Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with carrier protein from Agrobacterium tumefaciens and an analogue of glycyl adenylate

5F5W | pdb_00005f5w

Crystal structure of the alpha subunit of glycyl tRNA synthetase (GlyRS) from Aquifex aeolicus in complex with an analog of glycyl adenylate (Gly-SA)

8SLG | pdb_00008slg

Crystal Structure of Glycine tRNA ligase from Mycobacterium thermoresistibile (glycyl adenylate bound)

8U2P | pdb_00008u2p

Crystal Structure of Glycine--tRNA ligase from Mycobacterium tuberculosis (G5A bound)

8U2Q | pdb_00008u2q

Crystal Structure of Glycine--tRNA ligase active site chimera from Mycobacterium thermoresistibile/tuberculosis (G5A bound)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3HXV | pdb_00003hxv

3HY0 | pdb_00003hy0

3MF1 | pdb_00003mf1

4H2T | pdb_00004h2t

4H2X | pdb_00004h2x

5F5W | pdb_00005f5w

8SLG | pdb_00008slg

8U2P | pdb_00008u2p

8U2Q | pdb_00008u2q