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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = HY3

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Search Summary

This query matches 22 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Oryctolagus cuniculus (11)
	Homo sapiens (10)

Taxonomy

Eukaryota (21)

Experimental Method

	ELECTRON MICROSCOPY (21)
	X-RAY DIFFRACTION (1)

Polymer Entity Type

Protein (22)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (5)
	2.5 - 3.0 (9)
	3.0 - 3.5 (4)
	3.5 - 4.0 (2)

Release Date

	2005 - 2009 (1)
	2020 - 2024 (21)

Symmetry Type

	Asymmetric (21)
	Helical (1)

AllSelected

1 to 22 of 22 Polymer Entities

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2G66: Entity 1	Download File View File

Crystal structure of a collagen-like peptide with 3(S)Hyp in the Xaa position

Schumacher, M.A., Mizuno, K., Bachinger, H.P.

(2006) J Biol Chem 281: 27566-27574

Released	2006-08-08
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A, B, C [auth G]
Macromolecule	collagen

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7O7Y: Entity 35	Download File View File

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Bhatt, P.R., Scaiola, A., Leibundgut, M.A., Atkins, J.F., Ban, N.

(2021) Science 372: 1306-1313

Released	2021-06-02
Method	ELECTRON MICROSCOPY 2.2 Å
Chain ID	IA [auth Aw]
Organism	Oryctolagus cuniculus
Macromolecule	40S ribosomal protein S23

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7O7Z: Entity 35	Download File View File

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Bhatt, P.R., Scaiola, A., Leibundgut, M.A., Atkins, J.F., Ban, N.

(2021) Science 372: 1306-1313

Released	2021-06-02
Method	ELECTRON MICROSCOPY 2.4 Å
Chain ID	IA [auth Aw]
Organism	Oryctolagus cuniculus
Macromolecule	40S ribosomal protein S23

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7O80: Entity 35	Download File View File

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Bhatt, P.R., Scaiola, A., Leibundgut, M.A., Atkins, J.F., Ban, N.

(2021) Science 372: 1306-1313

Released	2021-06-02
Method	ELECTRON MICROSCOPY 2.9 Å
Chain ID	IA [auth Aw]
Organism	Oryctolagus cuniculus
Macromolecule	40S ribosomal protein S23

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7O81: Entity 36	Download File View File

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Bhatt, P.R., Scaiola, A., Leibundgut, M.A., Atkins, J.F., Ban, N.

(2021) Science 372: 1306-1313

Released	2021-06-02
Method	ELECTRON MICROSCOPY 3.1 Å
Chain ID	JA [auth Aw]
Organism	Oryctolagus cuniculus
Macromolecule	40S ribosomal protein S23

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7R4X: Entity 18	Download File View File

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Pellegrino, S., Dent, K.C., Spikes, T., Warren, A.J.

(2023) Nucleic Acids Res 51: 4043-4054

Released	2023-02-22
Method	ELECTRON MICROSCOPY 2.15 Å
Chain ID	R [auth X]
Organism	Homo sapiens
Macromolecule	40S ribosomal protein S23

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7ZJW: Entity 83	Download File View File

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Hilal, T., Simonovic, M., Spahn, C.M.T.

(2022) Science 376: 1338-1343

Released	2022-10-19
Method	ELECTRON MICROSCOPY 2.8 Å
Chain ID	EC [auth Si]
Organism	Oryctolagus cuniculus
Macromolecule	40S ribosomal protein S23

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7ZJX: Entity 80	Download File View File

Rabbit 80S ribosome programmed with SECIS and SBP2

Hilal, T., Simonovic, M., Spahn, C.M.T.

(2022) Science 376: 1338-1343

Released	2022-09-07
Method	ELECTRON MICROSCOPY 3.1 Å
Chain ID	BC [auth Si]
Organism	Oryctolagus cuniculus
Macromolecule	40S ribosomal protein S23

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8BTK: Entity 85	Download File View File

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Jaskolowski, M., Jomaa, A., Gamerdinger, M., Shrestha, S., Leibundgut, M., Deuerling, E., Ban, N.

(2023) Nat Struct Mol Biol 30: 770-777

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.5 Å
Chain ID	GC [auth Aw]
Organism	Oryctolagus cuniculus
Macromolecule	40S ribosomal protein S23

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8G5Y: Entity 20	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.29 Å
Chain ID	T [auth SX]
Organism	Homo sapiens
Macromolecule	uS12

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8G5Z: Entity 20	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.64 Å
Chain ID	T [auth SX]
Organism	Homo sapiens
Macromolecule	uS12

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8G60: Entity 20	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.54 Å
Chain ID	T [auth SX]
Organism	Homo sapiens
Macromolecule	uS12

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8G61: Entity 20	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.94 Å
Chain ID	T [auth SX]
Organism	Homo sapiens
Macromolecule	uS12

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8G6J: Entity 20	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.8 Å
Chain ID	T [auth SX]
Organism	Homo sapiens
Macromolecule	uS12

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8GLP: Entity 20	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Watson, Z.L., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 1.67 Å
Chain ID	T [auth SX]
Organism	Homo sapiens
Macromolecule	40S ribosomal protein S23 (uS12)

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8P2K: Entity 85	Download File View File

Ternary complex of translating ribosome, NAC and METAP1

Jia, M., Jaskolowski, M., Scaiola, A., Jomaa, A., Ban, N.

(2023) Science 380: 1238-1243

Released	2023-07-19
Method	ELECTRON MICROSCOPY 2.9 Å
Chain ID	GC [auth Aw]
Organism	Oryctolagus cuniculus
Macromolecule	40S ribosomal protein S23

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8PPK: Entity 26	Download File View File

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Schubert, K., Karousis, E.D., Ban, I., Lapointe, C.P., Leibundgut, M., Baeumlin, E., Kummerant, E., Scaiola, A., Schoenhut, T., Ziegelmueller, J., Puglisi, J.D., Muehlemann, O., Ban, N.

(2023) Mol Cell 83: 3546-3557.e8

Released	2023-10-18
Method	ELECTRON MICROSCOPY 2.98 Å
Chain ID	Z [auth X]
Organism	Homo sapiens
Macromolecule	40S ribosomal protein S23

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8PPL: Entity 41	Download File View File

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Schubert, K., Karousis, E.D., Ban, I., Lapointe, C.P., Leibundgut, M., Baeumlin, E., Kummerant, E., Scaiola, A., Schoenhut, T., Ziegelmueller, J., Puglisi, J.D., Muehlemann, O., Ban, N.

(2023) Mol Cell 83: 3546-3557.e8

Released	2023-10-18
Method	ELECTRON MICROSCOPY 2.65 Å
Chain ID	OA [auth AX]
Organism	Homo sapiens
Macromolecule	40S ribosomal protein S23

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9C3H: Entity 71	Download File View File

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Erzberger, J.P., Cruz, V.E.

(2024) Science 386: eadq8587-eadq8587

Released	2024-12-04
Method	ELECTRON MICROSCOPY 2 Å
Chain ID	SB [auth SX]
Organism	Homo sapiens
Macromolecule	Small ribosomal subunit protein uS12

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9F1B: Entity 23	Download File View File

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Yudin, D., Scaiola, A., Ban, N.

(2024) Nature 633: 718-724

Released	2024-08-21
Method	ELECTRON MICROSCOPY 3.01 Å
Chain ID	W [auth Aw]
Organism	Oryctolagus cuniculus
Macromolecule	40S ribosomal protein S23

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9F1C: Entity 18	Download File View File

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Yudin, D., Scaiola, A., Ban, N.

(2024) Nature 633: 718-724

Released	2024-08-21
Method	ELECTRON MICROSCOPY 3.78 Å
Chain ID	R [auth Aw]
Organism	Oryctolagus cuniculus
Macromolecule	40S ribosomal protein S23

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9F1D: Entity 24	Download File View File

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Yudin, D., Scaiola, A., Ban, N.

(2024) Nature 633: 718-724

Released	2024-08-21
Method	ELECTRON MICROSCOPY 3.26 Å
Chain ID	X [auth Aw]
Organism	Oryctolagus cuniculus
Macromolecule	40S ribosomal protein S23

1 to 22 of 22 Polymer Entities

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