Structure Determination Methodology Scientific Name of Source Organism Refinement Resolution (Å) Membrane Protein Annotation -- Tabular Report -- Entry IDs Create Custom Report Structure Sequence Ligand Oligosaccharide Structural Genomics Center Primary Citation Biological Details Sequence Clusters Binding Affinity Crystallization Data Collection Refinement Refinement Parameters Unit Cell NMR Representative Model NMR Spectrometer NMR Sample Conditions NMR Refinement NMR Ensemble NMR Software EM Structure
Niwa, S. , Takeda, K. , Wang-Otomo, Z.-Y. , Miki, K.
(2014) Nature 508 : 228-232
Released 2014-04-09 Method X-RAY DIFFRACTION 3.008 Å
Organisms Macromolecule Unique protein chains: 6
Unique Ligands BCL , BPH , CA , CRT , FE , HEM , MQ8 , PEF , PGW , PO4 , UQ8
Niwa, S. , Takeda, K. , Wang-Otomo, Z.-Y. , Miki, K.
(2014) Nature 508 : 228-232
Released 2014-07-09 Method X-RAY DIFFRACTION 3.006 Å
Organisms Macromolecule Unique protein chains: 6
Unique Ligands BCL , BPH , CA , CRT , FE , HEM , MQ8 , PEF , PO4 , UQ8
Wang-Otomo, Z.-Y. , Yu, L.-J.
(2016) Biochemistry 55 : 6495-6504
Released 2017-03-22 Method X-RAY DIFFRACTION 3.3 Å
Organisms Macromolecule Unique protein chains: 6
Unique Ligands BCL , BPH , CRT , FE , HEM , MQ8 , PEF , PGW , PO4 , SR , UQ8
Wang-Otomo, Z.-Y. , Yu, L.-J.
(2016) Biochemistry 55 : 6495-6504
Released 2017-03-22 Method X-RAY DIFFRACTION 3.3 Å
Organisms Macromolecule Unique protein chains: 6
Unique Ligands BA , BCL , BPH , CRT , FE , HEM , MQ8 , PEF , PGW , PO4 , UQ8
Yu, L.-J. , Suga, M. , Wang-Otomo, Z.-Y. , Shen, J.-R.
(2018) Nature 556 : 209-213
Released 2018-04-11 Method X-RAY DIFFRACTION 1.9 Å
Organisms Macromolecule Unique protein chains: 6
Unique Ligands BCL , BPH , CA , CDL , CRT , FE , GOL , HEC , LDA , LHG , LMT , MG , MQ8 , PEF , PGV , SO4 , UNL , UQ8
Yu, L.-J. , Wang-Otomo, Z.-Y.
(2021) Nat Commun 12 : 1104-1104
Released 2021-03-03 Method X-RAY DIFFRACTION 2.89 Å
Organisms Macromolecule Unique protein chains: 7
Unique Ligands BCL , BPH , CA , CDL , CRT , FE , GOL , HEM , LHG , LMT , MQ8 , PEF , PGV , SF4 , SO4 , UQ8
Tani, K. , Kanno, R. , Makino, Y. , Hall, M. , Takenouchi, M. , Imanishi, M. , Yu, L.-J. , Overmann, J. , Madigan, M.T. , Kimura, Y. , Mizoguchi, A. , Humbel, B.M. , Wang-Otomo, Z.-Y.
(2020) Nat Commun 11 : 4955-4955
Released 2020-10-07 Method ELECTRON MICROSCOPY 2.82 Å
Organisms Macromolecule Unique protein chains: 10
Unique Ligands 8K6 , BCL , BPH , CA , CDL , DGA , FE , H4X , HEM , LMT , MG , MQ8 , PGV , UQ8
Qian, P. , Koblizek, M.
(2022) Sci Adv 8 : eabk3139-eabk3139
Released 2022-03-02 Method ELECTRON MICROSCOPY 2.35 Å
Organisms Macromolecule Unique protein chains: 9
Unique Ligands 0V9 , BCL , BPH , CD4 , CRT , FE , HEC , LMT , MQ8 , NDG , PGW , UYH , V75 , V7B , V7N Unique branched monosaccharides MAN, RAM
Qian, P. , Koblizek, M.
(2022) Sci Adv 8 : eabk3139-eabk3139
Released 2022-03-02 Method ELECTRON MICROSCOPY 2.5 Å
Organisms Macromolecule Unique protein chains: 12
Unique Ligands 0V9 , BCL , BPH , CD4 , CRT , FE , HEC , LMT , MQ8 , NDG , PGW , UYH , V75 , V7B , V7N Unique branched monosaccharides MAN, RAM
Qian, P. , Koblizek, M.
(2022) Sci Adv 8 : eabk3139-eabk3139
Released 2022-03-02 Method ELECTRON MICROSCOPY 2.47 Å
Organisms Macromolecule Unique protein chains: 11
Unique Ligands 0V9 , BCL , BPH , CD4 , CRT , FE , HEC , LMT , MQ8 , NDG , PGW , UYH , V75 , V7B , V7N Unique branched monosaccharides MAN, RAM
Qian, P. , Koblizek, M.
(2022) Sci Adv 8 : eabk3139-eabk3139
Released 2022-03-02 Method ELECTRON MICROSCOPY 2.44 Å
Organisms Macromolecule Unique protein chains: 11
Unique Ligands 0V9 , BCL , BPH , CD4 , CRT , FE , HEC , LMT , MQ8 , NDG , PGW , UYH , V75 , V7B , V7N Unique branched monosaccharides MAN, RAM
Tani, K. , Kobayashi, K. , Hosogi, N. , Ji, X.-C. , Nagashima, S. , Nagashima, K.V.P. , Tsukatani, Y. , Kanno, R. , Hall, M. , Yu, L.-J. , Ishikawa, I. , Okura, Y. , Madigan, M.T. , Mizoguchi, A. , Humbel, B.M. , Kimura, Y. , Wang-Otomo, Z.-Y.
(2022) J Biol Chem 298 : 101967-101967
Released 2022-05-04 Method ELECTRON MICROSCOPY 2.81 Å
Organisms Macromolecule Unique protein chains: 9
Unique Ligands BCL , BPH , CA , CDL , CRT , DGA , FE , HEC , LDA , LMT , MG , MQ8 , PGV , PLM , UQ8
Wang, G.-L. , Qi, C.-H. , Yu, L.-J.
(2024) J Integr Plant Biol 66 : 2262-2272
Released 2024-05-22 Method ELECTRON MICROSCOPY 2.42 Å
Organisms Macromolecule Unique protein chains: 11
Unique Ligands A1LZM , A1LZP , A1LZQ , BGL , CDL , FE , HEC , LHG , LYC , MQ8 , PEF , PGV , UNL , UQ8
Tani, K. , Kanno, R. , Harada, A. , Kobayashi, A. , Minamino, A. , Nakamura, N. , Ji, X.-C. , Purba, E.R. , Hall, M. , Yu, L.-J. , Madigan, M.T. , Mizoguchi, A. , Iwasaki, K. , Humbel, B.M. , Kimura, Y. , Wang-Otomo, Z.-Y.
(2024) Commun Biol 7 : 176-176
Released 2024-02-21 Method ELECTRON MICROSCOPY 2.24 Å
Organisms Macromolecule Unique protein chains: 9
Unique Ligands BCL , BPH , CA , CDL , CRT , FE , HEM , LDA , LMT , MG , MQ8 , PGV , PLM , UQ8 , Z41
Tani, K. , Kanno, R. , Harada, A. , Kobayashi, A. , Minamino, A. , Nakamura, N. , Ji, X.-C. , Purba, E.R. , Hall, M. , Yu, L.-J. , Madigan, M.T. , Mizoguchi, A. , Iwasaki, K. , Humbel, B.M. , Kimura, Y. , Wang-Otomo, Z.-Y.
(2024) Commun Biol 7 : 176-176
Released 2024-02-21 Method ELECTRON MICROSCOPY 2.24 Å
Organisms Macromolecule Unique protein chains: 9
Unique Ligands BCL , BPH , CA , CDL , CRT , FE , HEM , LDA , LMT , MG , MQ8 , PGV , PLM , UQ8 , Z41
Tani, K. , Kanno, R. , Nagashima, K.V.P. , Hiwatashi, N. , Kawakami, M. , Nakata, K. , Nagashima, S. , Inoue, K. , Takaichi, S. , Purba, E.R. , Hall, M. , Yu, L.-J. , Madigan, M.T. , Mizoguchi, A. , Humbel, B.M. , Kimura, Y. , Wang-Otomo, Z.-Y.
(2025) Commun Biol 8 : 42-42
Released 2025-01-29 Method ELECTRON MICROSCOPY 2.4 Å
Organisms Macromolecule Unique protein chains: 9
Unique Ligands BCL , BPH , CDL , CRT , FE , HEC , LMT , MG , MQ8 , PGV , PLM , SF4 , UQ8 , Z41
Tani, K. , Kanno, R. , Nagashima, K.V.P. , Hiwatashi, N. , Kawakami, M. , Nakata, K. , Nagashima, S. , Inoue, K. , Takaichi, S. , Purba, E.R. , Hall, M. , Yu, L.-J. , Madigan, M.T. , Mizoguchi, A. , Humbel, B.M. , Kimura, Y. , Wang-Otomo, Z.-Y.
(2025) Commun Biol 8 : 42-42
Released 2025-01-29 Method ELECTRON MICROSCOPY 2.6 Å
Organisms Macromolecule Unique protein chains: 8
Unique Ligands BCL , BPH , CDL , CRT , FE , HEC , LMT , MG , MQ8 , PGV , PLM , UQ8 , Z41
Wang, G.-L. , Wang, X.-P. , Yu, L.-J.
(2024) Commun Biol 7 : 1658-1658
Released 2025-01-22 Method ELECTRON MICROSCOPY 2.65 Å
Organisms Macromolecule Unique protein chains: 6
Unique Ligands 8K6 , BCL , BPH , CRT , FE , HEC , LMT , MG , MQ8 , PGV