RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Chemical ID(s) = PSU

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Chemical Attributes

Help

NOT

Count

Add Subquery

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 933 Structures.

Refinements

Structure Determination Methodology

experimental (933)

Scientific Name of Source Organism

	Escherichia coli (380)
	Thermus thermophilus HB8 (230)
	Escherichia coli K-12 (174)
	Homo sapiens (104)
	synthetic construct (70)
	Tequatrovirus T4 (57)
	Haloarcula marismortui (45)
	Saccharomyces cerevisiae (44)
	Thermus thermophilus (35)
	Escherichia coli BW25113 (28)

More...

Taxonomy

	Bacteria (662)
	Eukaryota (235)
	Duplodnaviria (78)
	Archaea (74)
	other sequences (70)
	Riboviria (14)
	unclassified bacterial viruses (4)
	unclassified sequences (1)

Experimental Method

	ELECTRON MICROSCOPY (570)
	X-RAY DIFFRACTION (340)
	SOLUTION NMR (22)
	SOLID-STATE NMR (1)

Polymer Entity Type

	RNA (931)
	Protein (881)
	DNA (11)
	NA-hybrid (1)

Refinement Resolution (Å)

	1.5 - 2.0 (30)
	2.0 - 2.5 (140)
	2.5 - 3.0 (311)
	3.0 - 3.5 (236)
	3.5 - 4.0 (99)
	4.0 - 4.5 (20)
	> 4.5 (74)

Release Date

	1975 - 1979 (2)
	1985 - 1989 (6)
	1990 - 1994 (2)
	1995 - 1999 (10)
	2000 - 2004 (26)
	2005 - 2009 (58)
	2010 - 2014 (108)
	2015 - 2019 (184)
	2020 - 2024 (496)
	2025 - 2029 (41)

Enzyme Classification Name

	Hydrolases (99)
	Transferases (34)
	Lyases (65)
	Ligases (20)
	Isomerases (4)

Symmetry Type

	Asymmetric (865)
	Cyclic (16)

SCOP Classification

	Low resolution protein structures (24)
	Alpha and beta proteins (a+b) (56)
	All beta proteins (58)
	Alpha and beta proteins (a/b) (56)
	All alpha proteins (46)
	Small proteins (41)
	Peptides (27)
	Artifacts (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 933 Structures

Page 1 of 38

Sort by

Explore in 3D

1ASY \| pdb_00001asy	Download File View File

CLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASP

Ruff, M., Cavarelli, J., Rees, B., Krishnaswamy, S., Thierry, J.C., Moras, D.

(1991) Science 252: 1682-1689

Released	1995-05-08
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ASPARTYL-tRNA SYNTHETASE (protein) T-RNA (75-MER) (nucleic acid)

Explore in 3D

1ASZ \| pdb_00001asz	Download File View File

THE ACTIVE SITE OF YEAST ASPARTYL-TRNA SYNTHETASE: STRUCTURAL AND FUNCTIONAL ASPECTS OF THE AMINOACYLATION REACTION

Cavarelli, J., Rees, B., Thierry, J.C., Moras, D.

(1994) EMBO J 13: 327-337

Released	1995-05-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ASPARTYL-tRNA SYNTHETASE (protein) T-RNA (75-MER) (nucleic acid)
Unique Ligands	ATP

Explore in 3D

1B23 \| pdb_00001b23	Download File View File

E. coli cysteinyl-tRNA and T. aquaticus elongation factor EF-TU:GTP ternary complex

Nissen, P., Kjeldgaard, M., Thirup, S., Nyborg, J.

(1999) Structure 7: 143-156

Released	1998-12-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli Thermus aquaticus
Macromolecule	ELONGATION FACTOR TU (protein) CYSTEINYL TRNA (nucleic acid)
Unique Ligands	CYS, GNP, MG, SO4

Explore in 3D

1BZT \| pdb_00001bzt	Download File View File

STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS,3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE

Durant, P.C., Davis, D.R.

(1999) J Mol Biology 285: 115-131

Released	1999-04-27
Method	SOLUTION NMR
Macromolecule	TRNA (nucleic acid)

Explore in 3D

1BZU \| pdb_00001bzu	Download File View File

STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS, 3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE

Durant, P.C., Davis, D.R.

(1999) J Mol Biology 285: 115-131

Released	1999-04-27
Method	SOLUTION NMR
Macromolecule	TRNA (nucleic acid)

Explore in 3D

1C0A \| pdb_00001c0a	Download File View File

CRYSTAL STRUCTURE OF THE E. COLI ASPARTYL-TRNA SYNTHETASE : TRNAASP : ASPARTYL-ADENYLATE COMPLEX

Eiler, S., Dock-Bregeon, A.-C., Moulinier, L., Thierry, J.-C., Moras, D.

(1999) EMBO J 18: 6532-6541

Released	1999-11-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	ASPARTYL TRNA SYNTHETASE (protein) ASPARTYL TRNA (nucleic acid)
Unique Ligands	AMO, AMP, SO4

Explore in 3D

1C2W \| pdb_00001c2w	Download File View File

23S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTION

Brimacombe, R., Mueller, F.

(2000) J Mol Biology 298: 35-59

Released	2000-04-10
Method	ELECTRON MICROSCOPY 7.5 Å
Organisms	Escherichia coli
Macromolecule	23S RIBOSOMAL RNA (nucleic acid)

Explore in 3D

1EFW \| pdb_00001efw	Download File View File

Crystal structure of aspartyl-tRNA synthetase from Thermus thermophilus complexed to tRNAasp from Escherichia coli

Briand, C., Poterszman, A., Eiler, S., Webster, G., Thierry, J.-C., Moras, D.

(2000) J Mol Biology 299: 1051-1060

Released	2000-06-19
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli Thermus thermophilus
Macromolecule	ASPARTYL-TRNA SYNTHETASE (protein) ASPARTYL-TRNA (nucleic acid)

Explore in 3D

1EG0 \| pdb_00001eg0	Download File View File

FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME

Gabashvili, I.S., Agrawal, R.K., Spahn, C.M.T., Grassucci, R.A., Svergun, D.I., Frank, J., Penczek, P.

(2000) Cell 100: 537-549

Released	2000-03-06
Method	ELECTRON MICROSCOPY 11.5 Å
Organisms	Escherichia coli
Macromolecule	Unique protein chains: 11 Unique nucleic acid chains: 4

Explore in 3D

1EHZ \| pdb_00001ehz	Download File View File

The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution

Shi, H., Moore, P.B.

(2000) RNA 6: 1091-1105

Released	2000-10-02
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	TRANSFER RNA (PHE) (nucleic acid)
Unique Ligands	MG, MN

Explore in 3D

1EVV \| pdb_00001evv	Download File View File

CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTION

Jovine, L., Djordjevic, S., Rhodes, D.

(2000) J Mol Biology 301: 401-414

Released	2000-05-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces
Macromolecule	PHENYLALANINE TRANSFER RNA (nucleic acid)
Unique Ligands	MG, SPM

Explore in 3D

1F7U \| pdb_00001f7u	Download File View File

CRYSTAL STRUCTURE OF THE ARGINYL-TRNA SYNTHETASE COMPLEXED WITH THE TRNA(ARG) AND L-ARG

Delagoutte, B., Moras, D., Cavarelli, J.

(2000) EMBO J 19: 5599-5610

Released	2001-06-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ARGINYL-TRNA SYNTHETASE (protein) TRNA(ARG) (nucleic acid)
Unique Ligands	ARG, SO4

Explore in 3D

1F7V \| pdb_00001f7v	Download File View File

CRYSTAL STRUCTURE OF YEAST ARGINYL-TRNA SYNTHETASE COMPLEXED WITH THE TRNAARG

Delagoutte, B., Moras, D., Cavarelli, J.

(2000) EMBO J 19: 5599-5610

Released	2001-06-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ARGINYL-TRNA SYNTHETASE (protein) TRNA(ARG) (nucleic acid)

Explore in 3D

1FCW \| pdb_00001fcw	Download File View File

TRNA POSITIONS DURING THE ELONGATION CYCLE

Agrawal, R.K., Spahn, C.M.T., Penczek, P., Grassucci, R.A., Nierhaus, K.H., Frank, J.

(2000) J Cell Biol 150: 447-459

Released	2000-08-11
Method	ELECTRON MICROSCOPY 17 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	TRNAPHE (nucleic acid)

Explore in 3D

1FIR \| pdb_00001fir	Download File View File

CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3)

Benas, P., Dumas, P.

(2000) RNA 6: 1347-1355

Released	2001-01-17
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Bos taurus
Macromolecule	HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3) (nucleic acid)
Unique Ligands	MG, NA

Explore in 3D

1FL8 \| pdb_00001fl8	Download File View File

HYPERMODIFIED NUCLEOSIDES IN THE ANTICODON OF TRNALYS STABILIZE A CANONICAL U-TURN STRUCTURE

Sundaram, M., Durant, P.C., Davis, D.R.

(2000) Biochemistry 39: 12575-12584

Released	2000-10-16
Method	SOLUTION NMR
Macromolecule	ANTICODON DOMAIN OF TRNA(LYS) (nucleic acid)

Explore in 3D

1GSG \| pdb_00001gsg	Download File View File

Structure of E.coli glutaminyl-tRNA synthetase complexed with trnagln and ATP at 2.8 Angstroms resolution

Rould, M.A., Perona, J.J., Soell, D., Steitz, T.A.

(1989) Science 246: 1135-1142

Released	1992-02-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	GLUTAMINYL-TRNA SYNTHETASE (protein) TRNAGLN (nucleic acid)

Explore in 3D

1H3E \| pdb_00001h3e	Download File View File

Tyrosyl-tRNA synthetase from Thermus thermophilus complexed with wild-type tRNAtyr(GUA) and with ATP and tyrosinol

Cusack, S., Yaremchuk, A., Kriklivyi, I., Tukalo, M.

(2002) EMBO J 21: 3829

Released	2002-10-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Thermus thermophilus Thermus thermophilus HB27
Macromolecule	TYROSYL-TRNA SYNTHETASE (protein) WILD-TYPE TRNATYR(GUA) (nucleic acid)
Unique Ligands	ATP, TYE

Explore in 3D

1H4Q \| pdb_00001h4q	Download File View File

Prolyl-tRNA synthetase from Thermus thermophilus complexed with tRNApro(CGG), ATP and prolinol

Yaremchuk, A., Tukalo, M., Cusack, S.

(2001) J Mol Biology 309: 989

Released	2001-06-18
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermus thermophilus
Macromolecule	PROLYL-TRNA SYNTHETASE (protein) TRNAPRO(CGG) (nucleic acid)
Unique Ligands	ATP, PRI, SO4, ZN

Explore in 3D

1H4S \| pdb_00001h4s	Download File View File

Prolyl-tRNA synthetase from Thermus thermophilus complexed with tRNApro(CGG) and a prolyl-adenylate analogue

Yaremchuk, A., Tukalo, M., Cusack, S.

(2001) J Mol Biology 309: 989

Released	2001-06-18
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Thermus thermophilus
Macromolecule	PROLYL-TRNA SYNTHETASE (protein) TRNAPRO(CGG) (nucleic acid)
Unique Ligands	P5A, SO4, ZN

Explore in 3D

1IL2 \| pdb_00001il2	Download File View File

Crystal Structure of the E. coli Aspartyl-tRNA Synthetase:Yeast tRNAasp:aspartyl-Adenylate Complex

Moulinier, L., Eiler, S., Eriani, G., Gangloff, J., Thierry, J.C., Gabriel, K., McClain, W.H., Moras, D.

(2001) EMBO J 20: 5290-5301

Released	2001-09-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli Saccharomyces cerevisiae
Macromolecule	ASPARTYL-TRNA SYNTHETASE (protein) ASPARTYL TRANSFER RNA (nucleic acid)
Unique Ligands	AMO, SO4

Explore in 3D

1JGO \| pdb_00001jgo	Download File View File

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY

Yusupova, G.Z., Yusupov, M.M., Cate, J.H.D., Noller, H.F.

(2001) Cell 106: 233-241

Released	2001-07-20
Method	X-RAY DIFFRACTION 5.6 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 4

Explore in 3D

1JGP \| pdb_00001jgp	Download File View File

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY

Yusupova, G.Z., Yusupov, M.M., Cate, J.H.D., Noller, H.F.

(2001) Cell 106: 233-241

Released	2001-07-20
Method	X-RAY DIFFRACTION 7 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 4

Explore in 3D

1JGQ \| pdb_00001jgq	Download File View File

The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY

Yusupova, G.Z., Yusupov, M.M., Cate, J.H.D., Noller, H.F.

(2001) Cell 106: 233-241

Released	2001-07-20
Method	X-RAY DIFFRACTION 5 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 4

Explore in 3D

1LPW \| pdb_00001lpw	Download File View File

Solution structure of the yeast spliceosomal U2 snRNA-intron branch site helix featuring a conserved pseudouridine

Newby, M.I., Greenbaum, N.L.

(2002) Nat Struct Biol 12: 958-965

Released	2002-11-27
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	5'-R(GPGPUPGP(PSU)PAPGPUPA)-3' (nucleic acid) 5'-R(UPAPCPUPAPAPCPAPCP*C)-3' (nucleic acid)

1 to 25 of 933 Structures

Page 1 of 38

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1ASY | pdb_00001asy

1ASZ | pdb_00001asz

1B23 | pdb_00001b23

1BZT | pdb_00001bzt

1BZU | pdb_00001bzu

1C0A | pdb_00001c0a

1C2W | pdb_00001c2w

1EFW | pdb_00001efw

1EG0 | pdb_00001eg0

1EHZ | pdb_00001ehz

1EVV | pdb_00001evv

1F7U | pdb_00001f7u

1F7V | pdb_00001f7v

1FCW | pdb_00001fcw

1FIR | pdb_00001fir

1FL8 | pdb_00001fl8

1GSG | pdb_00001gsg

1H3E | pdb_00001h3e

1H4Q | pdb_00001h4q

1H4S | pdb_00001h4s

1IL2 | pdb_00001il2

1JGO | pdb_00001jgo

1JGP | pdb_00001jgp

1JGQ | pdb_00001jgq

1LPW | pdb_00001lpw