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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = RM4

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Bacteria Latreille et al. 1825 (2)
	Paramecium bursaria Chlorella virus 1 (2)
	Azotobacter vinelandii DJ (1)
	Entamoeba histolytica HM-1:IMSS (1)
	Lacticaseibacillus rhamnosus (1)
	Photorhabdus asymbiotica (1)
	Photorhabdus laumondii subsp. laumondii TTO1 (1)
	Rhizobium leguminosarum bv. trifolii (1)
	Stutzerimonas stutzeri (1)

Taxonomy

	Bacteria (6)
	Eukaryota (3)
	Varidnaviria (2)

Experimental Method

X-RAY DIFFRACTION (11)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (1)
	2015 - 2019 (5)
	2020 - 2024 (4)

Enzyme Classification Name

	Isomerases (3)
	Oxidoreductases (1)

Symmetry Type

	Cyclic (8)
	Dihedral (4)

SCOP Classification

	Artifacts (2)
	All beta proteins (1)
	Alpha and beta proteins (a+b) (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 11 of 11 Structures

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2QLX \| pdb_00002qlx	Download File View File

Crystal structure of rhamnose mutarotase RhaU of Rhizobium leguminosarum in complex with L-Rhamnose

Carpena, X., Loewen, P.C.

(2008) J Bacteriol 190: 2903-2910

Released	2008-12-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rhizobium leguminosarum bv. trifolii
Macromolecule	L-rhamnose mutarotase (protein)
Unique Ligands	FMT, MG, RM4

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4GJI \| pdb_00004gji	Download File View File

Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant H101N in complex with L-rhamnopyranose

Yoshida, H., Kamitori, S.

(2013) FEBS Open Bio 3: 35-40

Released	2012-12-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Stutzerimonas stutzeri
Macromolecule	L-rhamnose isomerase (protein)
Unique Ligands	MN, RAM, RM4, RNS

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5TIP \| pdb_00005tip	Download File View File

The Structure of the Major Capsid protein of PBCV-1

Klose, T., De Castro, C., Speciale, I., Molinaro, A., Van Etten, J.L., Rossmann, M.G.

(2018) Proc Natl Acad Sci U S A 115: E44-E52

Released	2017-10-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Paramecium bursaria Chlorella virus 1
Macromolecule	Major capsid protein (protein)
Unique Ligands	BGC, HG
Unique branched monosaccharides	7CV, BGC, FUC, GLA, MAN, RM4, XXR, XYP

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5TIQ \| pdb_00005tiq	Download File View File

The Structure of the Major Capsid protein of PBCV-1

Klose, T., De Castro, C., Speciale, I., Molinaro, A., Van Etten, J.L., Rossmann, M.G.

(2018) Proc Natl Acad Sci U S A 115: E44-E52

Released	2017-10-18
Method	X-RAY DIFFRACTION 2.537 Å
Organisms	Paramecium bursaria Chlorella virus 1
Macromolecule	Major capsid protein (protein)
Unique Ligands	HG
Unique branched monosaccharides	7CV, BGC, FUC, GLA, MAN, RM4, XXR, XYP

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5U93 \| pdb_00005u93	Download File View File

Structure of the Regulatory Domain of the AraC Family Transcriptional Activator RhaR

Zhao, H.

To be published

Released	2017-12-20
Method	X-RAY DIFFRACTION 1.999 Å
Organisms	Bacteria Latreille et al. 1825
Macromolecule	HTH-type transcriptional activator RhaR (protein)
Unique Ligands	NI, RM4

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5U9E \| pdb_00005u9e	Download File View File

Structure of the Regulatory Domain of the AraC Family Transcriptional Activator RhaR

Zhao, H.

To be published

Released	2017-12-20
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Bacteria Latreille et al. 1825
Macromolecule	HTH-type transcriptional activator RhaR (protein)
Unique Ligands	NI, RM4

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6IFB \| pdb_00006ifb	Download File View File

Structure of rhamnose bound beta-trefoil lectin from Entamoeba histolytica

Suguna, K., Khan, F.

(2020) Glycobiology 30: 474-488

Released	2019-09-25
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Entamoeba histolytica HM-1:IMSS
Macromolecule	lectin (protein)
Unique Ligands	GOL, IPA, RM4

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6RG1 \| pdb_00006rg1	Download File View File

Photorhabdus laumondii lectin PLL2 in complex with L-rhamnose

Houser, J., Fujdiarova, E., Wimmerova, M.

(2021) FEBS J 288: 1343-1365

Released	2020-07-01
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	lectin PLL2 from Photorhabdus laumondii (protein)
Unique Ligands	ACT, EDO, NA, RM4

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6RGR \| pdb_00006rgr	Download File View File

Photorhabdus asymbiotica lectin PHL in complex with L-rhamnose

Houser, J., Fujdiarova, E., Jancarikova, G., Wimmerova, M.

(2021) FEBS J 288: 1343-1365

Released	2020-07-01
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Photorhabdus asymbiotica
Macromolecule	Lectin PHL (protein)
Unique Ligands	CL, EDO, NA, RM4

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7DO7 \| pdb_00007do7	Download File View File

Crystal structure of Azotobacter vinelandii L-rhamnose 1-dehydrogenase(NAD and L-rhamnose bound-form)

Yoshiwara, K., Watanabe, Y., Watanabe, S.

(2021) FEBS Lett 595: 637-646

Released	2021-02-03
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Azotobacter vinelandii DJ
Macromolecule	Short-chain dehydrogenase/reductase SDR (protein)
Unique Ligands	NAD, RM4

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8JQ4 \| pdb_00008jq4	Download File View File

Crystal structure of Lactobacillus rhamnosus L-rhamnose isomerase in complex with L-rhamnose

Yoshida, H., Yoshihara, A.

(2024) Appl Microbiol Biotechnol 108: 249-249

Released	2024-03-13
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Lacticaseibacillus rhamnosus
Macromolecule	L-rhamnose isomerase (protein)
Unique Ligands	MN, RAM, RM4

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2QLX | pdb_00002qlx

Crystal structure of rhamnose mutarotase RhaU of Rhizobium leguminosarum in complex with L-Rhamnose

4GJI | pdb_00004gji

Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant H101N in complex with L-rhamnopyranose

5TIP | pdb_00005tip

The Structure of the Major Capsid protein of PBCV-1

5TIQ | pdb_00005tiq

The Structure of the Major Capsid protein of PBCV-1

5U93 | pdb_00005u93

Structure of the Regulatory Domain of the AraC Family Transcriptional Activator RhaR

5U9E | pdb_00005u9e

Structure of the Regulatory Domain of the AraC Family Transcriptional Activator RhaR

6IFB | pdb_00006ifb

Structure of rhamnose bound beta-trefoil lectin from Entamoeba histolytica

6RG1 | pdb_00006rg1

Photorhabdus laumondii lectin PLL2 in complex with L-rhamnose

6RGR | pdb_00006rgr

Photorhabdus asymbiotica lectin PHL in complex with L-rhamnose

7DO7 | pdb_00007do7

Crystal structure of Azotobacter vinelandii L-rhamnose 1-dehydrogenase(NAD and L-rhamnose bound-form)

8JQ4 | pdb_00008jq4

Crystal structure of Lactobacillus rhamnosus L-rhamnose isomerase in complex with L-rhamnose

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2QLX | pdb_00002qlx

4GJI | pdb_00004gji

5TIP | pdb_00005tip

5TIQ | pdb_00005tiq

5U93 | pdb_00005u93

5U9E | pdb_00005u9e

6IFB | pdb_00006ifb

6RG1 | pdb_00006rg1

6RGR | pdb_00006rgr

7DO7 | pdb_00007do7

8JQ4 | pdb_00008jq4