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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 210 Structures.

Refinements

Structure Determination Methodology

experimental (210)

Scientific Name of Source Organism

	Homo sapiens (32)
	Haloarcula marismortui (30)
	synthetic construct (28)
	Cardiobacterium hominis (11)
	Atropa belladonna (10)
	Cereibacter sphaeroides (6)
	Methanocaldococcus jannaschii DSM 2661 (5)
	Escherichia coli (4)
	Mus musculus (4)
	Datura metel (3)

More...

Taxonomy

	Eukaryota (65)
	Bacteria (45)
	Archaea (35)
	other sequences (28)
	Duplodnaviria (3)
	Riboviria (2)
	unclassified sequences (2)
	Riboviria (RNA viruses and viroids) (1)

Experimental Method

	X-RAY DIFFRACTION (209)
	NEUTRON DIFFRACTION (2)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (127)
	RNA (82)
	DNA (38)
	NA-hybrid (3)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (21)
	1.5 - 2.0 (52)
	2.0 - 2.5 (43)
	2.5 - 3.0 (68)
	3.0 - 3.5 (18)
	3.5 - 4.0 (3)
	4.0 - 4.5 (2)
	> 4.5 (1)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (6)
	2000 - 2004 (17)
	2005 - 2009 (53)
	2010 - 2014 (39)
	2015 - 2019 (42)
	2020 - 2024 (50)
	2025 - 2029 (1)

Enzyme Classification Name

	Oxidoreductases (21)
	Hydrolases (18)
	Transferases (15)
	Translocases (8)
	Ligases (6)
	Lyases (2)
	Isomerases (1)

Membrane Protein Annotation

	PDBTM (16)
	MemProtMD (14)
	OPM (11)
	mpstruc (4)

Symmetry Type

	Asymmetric (87)
	Cyclic (39)
	Dihedral (6)

SCOP Classification

	Low resolution protein structures (15)
	Alpha and beta proteins (a+b) (37)
	All alpha proteins (30)
	Alpha and beta proteins (a/b) (34)
	All beta proteins (28)
	Small proteins (27)
	Coiled coil proteins (2)
	Peptides (10)
	Multi-domain proteins (alpha and beta) (3)
	Artifacts (4)

AllSelected

1 to 25 of 210 Structures

Page 1 of 9

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1CS7	Download File View File

SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKER

Lewis, F.D., Liu, X., Wu, Y., Miller, S.E., Wasielewski, M.R., Letsinger, R.L., Sanishvili, R., Joachimiak, A., Tereshko, V., Egli, M.

(1999) J Am Chem Soc 121: 9905-9906

Released	2001-10-19
Method	X-RAY DIFFRACTION 3.2 Å
Macromolecule	5'-D(GP(BRU)PTPTPTPGP(S02)CPAPAPAPAPC)-3' (nucleic acid)
Unique Ligands	SR

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1DD9	Download File View File

STRUCTURE OF THE DNAG CATALYTIC CORE

Keck, J.L., Roche, D.D., Lynch, A.S., Berger, J.M.

(2000) Science 287: 2482-2486

Released	2000-04-07
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	DNA PRIMASE (protein)
Unique Ligands	SR

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1DUC	Download File View File

EIAV DUTPASE DUDP/STRONTIUM COMPLEX

Dauter, Z., Persson, R., Rosengren, A.M., Nyman, P.O., Wilson, K.S., Cedergren-Zeppezauer, E.S.

(1999) J Mol Biol 285: 655-673

Released	1998-06-03
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Equine infectious anemia virus
Macromolecule	DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE (protein)
Unique Ligands	DUD, SR

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1F1T	Download File View File

CRYSTAL STRUCTURE OF THE MALACHITE GREEN APTAMER COMPLEXED WITH TETRAMETHYL-ROSAMINE

Baugh, C., Grate, D., Wilson, C.

(2000) J Mol Biol 301: 117-128

Released	2000-09-04
Method	X-RAY DIFFRACTION 2.8 Å
Macromolecule	MALACHITE GREEN APTAMER RNA (nucleic acid)
Unique Ligands	ROS, SR

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1G1J	Download File View File

CRYSTAL STRUCTURE OF THE OLIGOMERIZATION DOMAIN FROM ROTAVIRUS NSP4

Bowman, G.D., Nodelman, I.M., Schutt, C.E.

(2000) J Mol Biol 304: 861-871

Released	2001-01-10
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Rotavirus A (strain RVA/SA11-Both/G3P5B[2])
Macromolecule	NON-STRUCTURAL GLYCOPROTEIN NSP4 (protein)
Unique Ligands	SR

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1G1S	Download File View File

P-SELECTIN LECTIN/EGF DOMAINS COMPLEXED WITH PSGL-1 PEPTIDE

Somers, W.S., Camphausen, R.T.

(2000) Cell 103: 467-479

Released	2001-10-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	P-SELECTIN (protein) PSGL-1 PEPTIDE (protein)
Unique Ligands	MRD, NA, SR
Unique branched monosaccharides	FUC, GAL, NAG, NGA, SIA

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1HYF	Download File View File

RIBONUCLEASE T1 V16A MUTANT IN COMPLEX WITH SR2+

De Swarte, J., De Vos, S., Langhorst, U., Steyaert, J., Loris, R.

(2001) Eur J Biochem 268: 3993-4000

Released	2001-02-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Aspergillus oryzae
Macromolecule	GUANYL-SPECIFIC RIBONUCLEASE T1 (protein)
Unique Ligands	2GP, SR

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1J8G	Download File View File

X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution

Deng, J., Xiong, Y., Sundaralingam, M.

(2001) Proc Natl Acad Sci U S A 98: 13665-13670

Released	2001-11-23
Method	X-RAY DIFFRACTION 0.61 Å
Macromolecule	5'-R(UPGPGPGPGPU)-3' (nucleic acid)
Unique Ligands	CA, NA, SPM, SR

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1M6G	Download File View File

Structural Characterisation of the Holliday Junction TCGGTACCGA

Thorpe, J.H., Gale, B.C., Teixeira, S.C.M., Cardin, C.J.

(2003) J Mol Biol 327: 97-109

Released	2003-05-06
Method	X-RAY DIFFRACTION 1.652 Å
Macromolecule	5'-D(TPCPGPGPTPAPCPCPGPA)-3' (nucleic acid)
Unique Ligands	SR

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1NUV	Download File View File

The Leadzyme Ribozyme Bound to Mg(H2O)6(II) and Sr(II) at 1.8 A resolution

Wedekind, J.E., Mckay, D.B.

(2003) Biochemistry 42: 9554-9563

Released	2003-08-19
Method	X-RAY DIFFRACTION 1.81 Å
Macromolecule	5'-R(CPGPGPAPCPCPGPAPGPCPCPAPG)-3' (nucleic acid) 5'-R(GPCPUPGPGPGPAPGPUPCPC)-3' (nucleic acid)
Unique Ligands	MG, SR

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1NVY	Download File View File

Strontium bound to the Holliday junction sequence d(TCGGTACCGA)4

Cardin, C.J., Thorpe, J.H., Gale, B.C., Teixeira, S.C.M.

To be published

Released	2003-02-25
Method	X-RAY DIFFRACTION 1.5 Å
Macromolecule	d(TCGGTACCGA)4 (nucleic acid)
Unique Ligands	SR

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1OO0	Download File View File

Crystal structure of the Drosophila Mago nashi-Y14 complex

Shi, H., Xu, R.M.

(2003) Genes Dev 17: 971-976

Released	2003-05-27
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Drosophila melanogaster
Macromolecule	CG8781-PA (protein) Mago nashi protein (protein)
Unique Ligands	BME, GOL, MPD, SR

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1OQ7	Download File View File

The crystal structure of the iron free (Apo-)form of Stearoyl Acyl Carrier Protein Desaturase from Ricinus Communis (Castor Bean).

Moche, M., Shanklin, J., Ghoshal, A.K., Lindqvist, Y.

(2003) J Biol Chem 278: 25072-25080

Released	2003-05-13
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Ricinus communis
Macromolecule	Acyl-[acyl-carrier protein] desaturase (protein)
Unique Ligands	SR

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1QRK	Download File View File

HUMAN FACTOR XIII WITH STRONTIUM BOUND IN THE ION SITE

Fox, B.A., Yee, V.C., Pederson, L.C., Le Trong, I., Bishop, P.D., Stenkamp, R.E., Teller, D.C.

(1999) J Biol Chem 274: 4917-4923

Released	1999-07-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (COAGULATION FACTOR XIII) (protein)
Unique Ligands	SR

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1S8F	Download File View File

Crystal structure of Rab9 complexed to GDP reveals a dimer with an active conformation of switch II

Wittmann, J.G., Rudolph, M.G.

(2004) FEBS Lett 568: 23-29

Released	2004-06-11
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Canis lupus familiaris
Macromolecule	Ras-related protein Rab-9A (protein)
Unique Ligands	BEZ, CL, GDP, MG, SR

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1SFC	Download File View File

NEURONAL SYNAPTIC FUSION COMPLEX

Sutton, R.B., Brunger, A.T.

(1998) Nature 395: 347-353

Released	1998-10-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Rattus norvegicus
Macromolecule	PROTEIN (SNAP-25B) (protein) PROTEIN (SYNAPTOBREVIN 2) (protein) PROTEIN (SYNTAXIN 1A) (protein)
Unique Ligands	MPD, SR

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1TJM	Download File View File

Crystallographic Identification of Sr2+ Coordination Site in Synaptotagmin I C2B Domain

Cheng, Y., Sequeira, S.M., Malinina, L., Tereshko, V., Sollner, T.H., Patel, D.J.

(2004) Protein Sci 13: 2665-2672

Released	2004-09-28
Method	X-RAY DIFFRACTION 1.18 Å
Organisms	Rattus norvegicus
Macromolecule	Synaptotagmin I (protein)
Unique Ligands	GOL, SR

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1U3E	Download File View File

DNA binding and cleavage by the HNH homing endonuclease I-HmuI

Shen, B.W., Landthaler, M., Shub, D.A., Stoddard, B.L.

(2004) J Mol Biol 342: 43-56

Released	2004-08-31
Method	X-RAY DIFFRACTION 2.92 Å
Organisms	Okubovirus SPO1
Macromolecule	HNH homing endonuclease (protein) 36-MER (nucleic acid) 5'-D(CPTPTPAPCPGPTPGPGPGPAPAPTPTPGPCPTPGPAPGPC)-3' (nucleic acid) 5'-D(PGPTPTPAPGPGPCPTPCPAPTPTPAPCPT)-3' (nucleic acid)
Unique Ligands	EDO, MN, SR, TRS

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1VC0	Download File View File

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Imidazole and Sr2+ solution

Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Hepatitis Delta virus ribozyme (nucleic acid)
Unique Ligands	SR

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1VQ8	Download File View File

The structure of CCDA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui

Schmeing, T.M., Steitz, T.A.

(2005) Mol Cell 20: 437-448

Released	2005-11-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Haloarcula marismortui
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 3
Unique Ligands	CD, CL, K, MG, NA, SPS, SR

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1VQ9	Download File View File

The structure of CCA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui

Schmeing, T.M., Steitz, T.A.

(2005) Mol Cell 20: 437-448

Released	2005-11-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Haloarcula marismortui
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 3
Unique Ligands	CD, CL, K, MG, NA, SPS, SR

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1VQK	Download File View File

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Schmeing, T.M., Steitz, T.A.

(2005) Mol Cell 20: 437-448

Released	2005-11-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Haloarcula marismortui
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 3
Unique Ligands	CD, CL, K, MG, NA, SR

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1VQL	Download File View File

The structure of the transition state analogue "DCSN" bound to the large ribosomal subunit of haloarcula marismortui

Schmeing, T.M., Steitz, T.A.

(2005) Mol Cell 20: 437-448

Released	2005-11-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Haloarcula marismortui
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 3
Unique Ligands	CD, CL, K, MG, NA, SR

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1VQM	Download File View File

The structure of the transition state analogue "DAN" bound to the large ribosomal subunit of haloarcula marismortui

Schmeing, T.M., Steitz, T.A.

(2005) Mol Cell 20: 437-448

Released	2005-11-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Haloarcula marismortui
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 3
Unique Ligands	CD, CL, K, MG, NA, SR

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1VQN	Download File View File

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Schmeing, T.M., Steitz, T.A.

(2005) Nature 438: 520-524

Released	2005-11-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Haloarcula marismortui
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 4
Unique Ligands	CD, CL, K, MG, NA, SR

1 to 25 of 210 Structures

Page 1 of 9

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