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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = T3Q

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Streptomyces fradiae (3)
	Campylobacter jejuni subsp. jejuni 81116 (2)
	Helicobacter pullorum (2)
	Providencia alcalifaciens (2)
	Helicobacter canadensis MIT 98-5491 (1)
	Salmonella enterica (1)
	Thermoanaerobacterium thermosaccharolyticum (1)

Taxonomy

Bacteria (12)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (8)
	2.0 - 2.5 (2)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (5)
	2015 - 2019 (3)
	2020 - 2024 (3)

Enzyme Classification Name

Transferases (5)

Symmetry Type

Cyclic (12)

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1 to 12 of 12 Structures

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Explore in 3D

3FSB \| pdb_00003fsb	Download File View File

Crystal structure of QdtC, the dTDP-3-amino-3,6-dideoxy-D-glucose N-acetyl transferase from Thermoanaerobacterium thermosaccharolyticum in complex with CoA and dTDP-3-amino-quinovose

Holden, H.M., Thoden, J.B.

(2009) Biochemistry 48: 2699-2709

Released	2009-02-17
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Thermoanaerobacterium thermosaccharolyticum
Macromolecule	QdtC (protein)
Unique Ligands	COA, T3Q

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3PFH \| pdb_00003pfh	Download File View File

X-Ray crystal structure the N,N-dimethyltransferase TylM1 from Streptomyces fradiae in complex with SAH and dTDP-Quip3N

Carney, A.E., Holden, H.M.

(2011) Biochemistry 50: 780-787

Released	2010-12-15
Method	X-RAY DIFFRACTION 1.792 Å
Organisms	Streptomyces fradiae
Macromolecule	N-methyltransferase (protein)
Unique Ligands	EDO, SAH, T3Q

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3PX2 \| pdb_00003px2	Download File View File

Structure of TylM1 from Streptomyces fradiae H123N mutant in complex with SAH and dTDP-Quip3N

Holden, H.M., Carney, A.E.

(2011) Biochemistry 50: 780-787

Released	2010-12-22
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Streptomyces fradiae
Macromolecule	N-methyltransferase (protein)
Unique Ligands	EDO, SAH, T3Q

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3PX3 \| pdb_00003px3	Download File View File

Structure of TylM1 from Streptomyces fradiae H123A mutant in complex with SAH and dTDP-Quip3N

Holden, H.M., Carney, A.E.

(2011) Biochemistry 50: 780-787

Released	2010-12-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces fradiae
Macromolecule	N-methyltransferase (protein)
Unique Ligands	EDO, SAH, T3Q

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4LXT \| pdb_00004lxt	Download File View File

Crystal structure WlaRD, a sugar 3N-formyl transferase in the presence of dTdp-Qui3N and 5-N-Formyl-THF

Thoden, J.B., Goneau, M.-F., Gilbert, M., Holden, H.M.

(2013) Biochemistry 52: 6114-6126

Released	2013-08-14
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Campylobacter jejuni subsp. jejuni 81116
Macromolecule	WlaRD, a sugar 3N-formyl transferase (protein)
Unique Ligands	CL, EDO, FON, MPO, T3Q

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4LY3 \| pdb_00004ly3	Download File View File

Crystal structure of WlaRD, a sugar 3N-formyl transferase in the presence of dTPD-Qui3N, dTDP-Qui3NFo, and THF

Thoden, J.B., Goneau, M.-F., Gilbert, M., Holden, H.M.

(2013) Biochemistry 52: 6114-6126

Released	2013-08-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Campylobacter jejuni subsp. jejuni 81116
Macromolecule	WlaRD a sugar 3N formyltransferase (protein)
Unique Ligands	1YF, 1YJ, MPO, T3Q

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4XCZ \| pdb_00004xcz	Download File View File

X-ray structure of the N-formyltransferase QdtF from Providencia alcalifaciens in complex with TDP-Qui3n and N5-THF

Thoden, J.B., Woodford, C.R., Holden, H.M.

(2015) Biochemistry 54: 631-638

Released	2015-01-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Providencia alcalifaciens
Macromolecule	TDP-3-aminoquinovose-N-formyltransferase (protein)
Unique Ligands	CL, EDO, FON, K, NA, T3Q

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4XD1 \| pdb_00004xd1	Download File View File

X-ray structure of the N-formyltransferase QdtF from Providencia alcalifaciens, W305A mutant, in the presence of TDP-Qui3N and N5-THF

Thoden, J.B., Woodford, C.R., Holden, H.M.

(2015) Biochemistry 54: 631-638

Released	2015-01-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Providencia alcalifaciens
Macromolecule	TDP-3-aminoquinovose-N-formyltransferase (protein)
Unique Ligands	CL, EDO, FON, K, NA, T3Q

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5UIM \| pdb_00005uim	Download File View File

X-ray structure of the FdtF N-formyltransferase from salmonella enteric O60 in complex with folinic acid and TDP-Qui3N

Woodford, C.R., Thoden, J.B., Holden, H.M.

(2017) J Struct Biol 200: 267-278

Released	2017-03-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Salmonella enterica
Macromolecule	Formyltransferase (protein)
Unique Ligands	FON, K, NA, T3Q, TYD

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7N7C \| pdb_00007n7c	Download File View File

crystal structure of the N-formyltransferase HCAN_0200 from helicobacter canadensis in complex with folinic acid and dTDP-3-aminoquinovose

Heisdorf, C.J., Thoden, J.B., Holden, H.M.

(2021) Protein Sci 30: 2144-2160

Released	2021-06-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Helicobacter canadensis MIT 98-5491
Macromolecule	Formyl_trans_N domain-containing protein (protein)
Unique Ligands	EDO, FON, K, T3Q

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7S3U \| pdb_00007s3u	Download File View File

Crystal structure of an N-acetyltransferase from Helicobacter pullorum in the presence of Coenzyme A and dTDP-3-amino-3,6-dideoxy-D-glucose

Griffiths, W.A., Spencer, K.D., Thoden, J.B., Holden, H.M.

(2021) Protein Sci 30: 2418-2432

Released	2021-09-22
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Helicobacter pullorum
Macromolecule	N-acetyltransferase (protein)
Unique Ligands	COA, EDO, T3Q

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7S43 \| pdb_00007s43	Download File View File

Crystal structure of an N-acetyltransferase, C80T mutant, from Helicobacter pullorum in the presence of Coenzyme A and dTDP-3-amino-3,6-dideoxy-D-glucose

Griffiths, W.A., Spencer, K.D., Thoden, J.B., Holden, H.M.

(2021) Protein Sci 30: 2418-2432

Released	2021-09-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Helicobacter pullorum
Macromolecule	N-acetyltransferase (protein)
Unique Ligands	COA, EDO, NA, T3Q

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3FSB | pdb_00003fsb

Crystal structure of QdtC, the dTDP-3-amino-3,6-dideoxy-D-glucose N-acetyl transferase from Thermoanaerobacterium thermosaccharolyticum in complex with CoA and dTDP-3-amino-quinovose

3PFH | pdb_00003pfh

X-Ray crystal structure the N,N-dimethyltransferase TylM1 from Streptomyces fradiae in complex with SAH and dTDP-Quip3N

3PX2 | pdb_00003px2

Structure of TylM1 from Streptomyces fradiae H123N mutant in complex with SAH and dTDP-Quip3N

3PX3 | pdb_00003px3

Structure of TylM1 from Streptomyces fradiae H123A mutant in complex with SAH and dTDP-Quip3N

4LXT | pdb_00004lxt

Crystal structure WlaRD, a sugar 3N-formyl transferase in the presence of dTdp-Qui3N and 5-N-Formyl-THF

4LY3 | pdb_00004ly3

Crystal structure of WlaRD, a sugar 3N-formyl transferase in the presence of dTPD-Qui3N, dTDP-Qui3NFo, and THF

4XCZ | pdb_00004xcz

X-ray structure of the N-formyltransferase QdtF from Providencia alcalifaciens in complex with TDP-Qui3n and N5-THF

4XD1 | pdb_00004xd1

X-ray structure of the N-formyltransferase QdtF from Providencia alcalifaciens, W305A mutant, in the presence of TDP-Qui3N and N5-THF

5UIM | pdb_00005uim

X-ray structure of the FdtF N-formyltransferase from salmonella enteric O60 in complex with folinic acid and TDP-Qui3N

7N7C | pdb_00007n7c

crystal structure of the N-formyltransferase HCAN_0200 from helicobacter canadensis in complex with folinic acid and dTDP-3-aminoquinovose

7S3U | pdb_00007s3u

Crystal structure of an N-acetyltransferase from Helicobacter pullorum in the presence of Coenzyme A and dTDP-3-amino-3,6-dideoxy-D-glucose

7S43 | pdb_00007s43

Crystal structure of an N-acetyltransferase, C80T mutant, from Helicobacter pullorum in the presence of Coenzyme A and dTDP-3-amino-3,6-dideoxy-D-glucose

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

3FSB | pdb_00003fsb

3PFH | pdb_00003pfh

3PX2 | pdb_00003px2

3PX3 | pdb_00003px3

4LXT | pdb_00004lxt

4LY3 | pdb_00004ly3

4XCZ | pdb_00004xcz

4XD1 | pdb_00004xd1

5UIM | pdb_00005uim

7N7C | pdb_00007n7c

7S3U | pdb_00007s3u

7S43 | pdb_00007s43