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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = U6J

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Search Summary

This query matches 4 Structures.

Refinements

Structure Determination Methodology

experimental (4)

Scientific Name of Source Organism

	Homo sapiens (3)
	Arabidopsis thaliana (1)

Taxonomy

Eukaryota (4)

Experimental Method

X-RAY DIFFRACTION (4)

Polymer Entity Type

Protein (4)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (2)

Release Date

2020 - 2024 (4)

Enzyme Classification Name

Hydrolases (4)

Symmetry Type

Asymmetric (4)

SCOP Classification

Alpha and beta proteins (a+b) (1)

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1 to 4 of 4 Structures

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Explore in 3D

6WO8 \| pdb_00006wo8	Download File View File

Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with 5-diphosphoinositol 1,3,4,6-tetrakisphosphate (5-PP-IP4), Mg, and Fluoride ion

Zong, G.N., Wang, H.C., Shears, S.B.

(2021) FASEB J 35: e21275-e21275

Released	2021-03-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Diphosphoinositol polyphosphate phosphohydrolase 1 (protein)
Unique Ligands	CL, F, MG, SO4, U6J

Explore in 3D

7MOH \| pdb_00007moh	Download File View File

Crystal Structure of Arabidopsis thaliana Plant and Fungi Atypical Dual Specificity Phosphatase 1(AtPFA-DSP1 ) Cys150Ser in complex with 5-diphosphoinositol 1,3,4,6-tetrakisphosphate (5PP-InsP4) and phosphate in conformation B (Pi(B))

Wang, H., Shears, S.B.

(2022) Nat Commun 13: 2231-2231

Released	2022-03-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Arabidopsis thaliana
Macromolecule	Tyrosine-protein phosphatase DSP1 (protein)
Unique Ligands	PO4, U6J

Explore in 3D

8T98 \| pdb_00008t98	Download File View File

Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with Scyllo-3-PP-(1,2,4,5)IP4, Mg, and Fluoride ion

Zong, G., Wang, H., Shears, S.B.

(2024) EMBO J 43: 462-480

Released	2023-11-15
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Diphosphoinositol polyphosphate phosphohydrolase 1 (protein)
Unique Ligands	CL, F, MG, U6J

Explore in 3D

8TFA \| pdb_00008tfa	Download File View File

Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with myo-5-PP-IP4, produced upon myo-(2OH)-IP5 phosphorylation by TvIPK

Zong, G., Wang, H., Shears, S.B.

(2024) EMBO J 43: 462-480

Released	2023-11-15
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Diphosphoinositol polyphosphate phosphohydrolase 1 (protein)
Unique Ligands	CL, F, MG, U6J

1 to 4 of 4 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

6WO8 | pdb_00006wo8

Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with 5-diphosphoinositol 1,3,4,6-tetrakisphosphate (5-PP-IP4), Mg, and Fluoride ion

7MOH | pdb_00007moh

Crystal Structure of Arabidopsis thaliana Plant and Fungi Atypical Dual Specificity Phosphatase 1(AtPFA-DSP1 ) Cys150Ser in complex with 5-diphosphoinositol 1,3,4,6-tetrakisphosphate (5PP-InsP4) and phosphate in conformation B (Pi(B))

8T98 | pdb_00008t98

Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with Scyllo-3-PP-(1,2,4,5)IP4, Mg, and Fluoride ion

8TFA | pdb_00008tfa

Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with myo-5-PP-IP4, produced upon myo-(2OH)-IP5 phosphorylation by TvIPK

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

6WO8 | pdb_00006wo8

Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with 5-diphosphoinositol 1,3,4,6-tetrakisphosphate (5-PP-IP4), Mg, and Fluoride ion

7MOH | pdb_00007moh

Crystal Structure of Arabidopsis thaliana Plant and Fungi Atypical Dual Specificity Phosphatase 1(AtPFA-DSP1 ) Cys150Ser in complex with 5-diphosphoinositol 1,3,4,6-tetrakisphosphate (5PP-InsP4) and phosphate in conformation B (Pi(B))

8T98 | pdb_00008t98

Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with Scyllo-3-PP-(1,2,4,5)IP4, Mg, and Fluoride ion

8TFA | pdb_00008tfa

Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with myo-5-PP-IP4, produced upon myo-(2OH)-IP5 phosphorylation by TvIPK