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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = V5N

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Search Summary

This query matches 35 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (35)

Scientific Name of Source Organism

	Oryctolagus cuniculus (18)
	Homo sapiens (17)

Taxonomy

Eukaryota (35)

Experimental Method

ELECTRON MICROSCOPY (35)

Polymer Entity Type

Protein (35)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (8)
	2.5 - 3.0 (12)
	3.0 - 3.5 (6)
	3.5 - 4.0 (4)

Release Date

2020 - 2024 (35)

Symmetry Type

Asymmetric (35)

AllSelected

1 to 25 of 35 Polymer Entities

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7O7Y: Entity 42	Download File View File

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Bhatt, P.R., Scaiola, A., Leibundgut, M.A., Atkins, J.F., Ban, N.

(2021) Science 372: 1306-1313

Released	2021-06-02
Method	ELECTRON MICROSCOPY 2.2 Å
Chain ID	PA [auth BA]
Organism	Oryctolagus cuniculus
Macromolecule	Ribosomal protein uL2

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7O7Y: Entity 68	Download File View File

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)

Bhatt, P.R., Scaiola, A., Leibundgut, M.A., Atkins, J.F., Ban, N.

(2021) Science 372: 1306-1313

Released	2021-06-02
Method	ELECTRON MICROSCOPY 2.2 Å
Chain ID	PB [auth Ba]
Organism	Oryctolagus cuniculus
Macromolecule	60S ribosomal protein L27a

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7O7Z: Entity 42	Download File View File

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Bhatt, P.R., Scaiola, A., Leibundgut, M.A., Atkins, J.F., Ban, N.

(2021) Science 372: 1306-1313

Released	2021-06-02
Method	ELECTRON MICROSCOPY 2.4 Å
Chain ID	PA [auth BA]
Organism	Oryctolagus cuniculus
Macromolecule	Ribosomal protein uL2

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7O7Z: Entity 68	Download File View File

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Bhatt, P.R., Scaiola, A., Leibundgut, M.A., Atkins, J.F., Ban, N.

(2021) Science 372: 1306-1313

Released	2021-06-02
Method	ELECTRON MICROSCOPY 2.4 Å
Chain ID	PB [auth Ba]
Organism	Oryctolagus cuniculus
Macromolecule	60S ribosomal protein L27a

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7O80: Entity 42	Download File View File

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Bhatt, P.R., Scaiola, A., Leibundgut, M.A., Atkins, J.F., Ban, N.

(2021) Science 372: 1306-1313

Released	2021-06-02
Method	ELECTRON MICROSCOPY 2.9 Å
Chain ID	PA [auth BA]
Organism	Oryctolagus cuniculus
Macromolecule	Ribosomal protein uL2

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7O80: Entity 68	Download File View File

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Bhatt, P.R., Scaiola, A., Leibundgut, M.A., Atkins, J.F., Ban, N.

(2021) Science 372: 1306-1313

Released	2021-06-02
Method	ELECTRON MICROSCOPY 2.9 Å
Chain ID	PB [auth Ba]
Organism	Oryctolagus cuniculus
Macromolecule	60S ribosomal protein L27a

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7O81: Entity 43	Download File View File

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Bhatt, P.R., Scaiola, A., Leibundgut, M.A., Atkins, J.F., Ban, N.

(2021) Science 372: 1306-1313

Released	2021-06-02
Method	ELECTRON MICROSCOPY 3.1 Å
Chain ID	QA [auth BA]
Organism	Oryctolagus cuniculus
Macromolecule	Ribosomal protein uL2

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7O81: Entity 69	Download File View File

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Bhatt, P.R., Scaiola, A., Leibundgut, M.A., Atkins, J.F., Ban, N.

(2021) Science 372: 1306-1313

Released	2021-06-02
Method	ELECTRON MICROSCOPY 3.1 Å
Chain ID	QB [auth Ba]
Organism	Oryctolagus cuniculus
Macromolecule	60S ribosomal protein L27a

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8BTK: Entity 30	Download File View File

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Jaskolowski, M., Jomaa, A., Gamerdinger, M., Shrestha, S., Leibundgut, M., Deuerling, E., Ban, N.

(2023) Nat Struct Mol Biol 30: 770-777

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.5 Å
Chain ID	DA [auth Ba]
Organism	Oryctolagus cuniculus
Macromolecule	60S ribosomal protein L27a

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8BTK: Entity 4	Download File View File

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Jaskolowski, M., Jomaa, A., Gamerdinger, M., Shrestha, S., Leibundgut, M., Deuerling, E., Ban, N.

(2023) Nat Struct Mol Biol 30: 770-777

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.5 Å
Chain ID	D [auth BA]
Organism	Oryctolagus cuniculus
Macromolecule	60S ribosomal protein L8

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8G5Y: Entity 39	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.29 Å
Chain ID	MA [auth LA]
Organism	Homo sapiens
Macromolecule	uL2

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8G5Y: Entity 50	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.29 Å
Chain ID	XA [auth La]
Organism	Homo sapiens
Macromolecule	60S ribosomal protein L27a

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8G5Z: Entity 39	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.64 Å
Chain ID	MA [auth LA]
Organism	Homo sapiens
Macromolecule	uL2

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8G5Z: Entity 52	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.64 Å
Chain ID	ZA [auth La]
Organism	Homo sapiens
Macromolecule	60S ribosomal protein L27a

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8G60: Entity 39	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.54 Å
Chain ID	MA [auth LA]
Organism	Homo sapiens
Macromolecule	uL2

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8G60: Entity 52	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.54 Å
Chain ID	ZA [auth La]
Organism	Homo sapiens
Macromolecule	uL15

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8G61: Entity 39	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.94 Å
Chain ID	MA [auth LA]
Organism	Homo sapiens
Macromolecule	uL2

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8G61: Entity 50	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.94 Å
Chain ID	XA [auth La]
Organism	Homo sapiens
Macromolecule	60S ribosomal protein L27a

Explore in 3D

8G6J: Entity 39	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.8 Å
Chain ID	MA [auth LA]
Organism	Homo sapiens
Macromolecule	uL2

Explore in 3D

8G6J: Entity 52	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.8 Å
Chain ID	ZA [auth La]
Organism	Homo sapiens
Macromolecule	60S ribosomal protein L27a

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8GLP: Entity 38	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Watson, Z.L., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 1.67 Å
Chain ID	LA
Organism	Homo sapiens
Macromolecule	60S ribosomal protein L8 (uL2)

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8GLP: Entity 49	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Watson, Z.L., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 1.67 Å
Chain ID	WA [auth La]
Organism	Homo sapiens
Macromolecule	60S ribosomal protein L27a

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8P2K: Entity 30	Download File View File

Ternary complex of translating ribosome, NAC and METAP1

Jia, M., Jaskolowski, M., Scaiola, A., Jomaa, A., Ban, N.

(2023) Science 380: 1238-1243

Released	2023-07-19
Method	ELECTRON MICROSCOPY 2.9 Å
Chain ID	DA [auth Ba]
Organism	Oryctolagus cuniculus
Macromolecule	60S ribosomal protein L27a

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8P2K: Entity 4	Download File View File

Ternary complex of translating ribosome, NAC and METAP1

Jia, M., Jaskolowski, M., Scaiola, A., Jomaa, A., Ban, N.

(2023) Science 380: 1238-1243

Released	2023-07-19
Method	ELECTRON MICROSCOPY 2.9 Å
Chain ID	D [auth BA]
Organism	Oryctolagus cuniculus
Macromolecule	60S ribosomal protein L8

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8QOI: Entity 29	Download File View File

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Holvec, S., Barchet, C., Frechin, L., Hazemann, I., von Loeffelholz, O., Klaholz, B.P.

(2024) Nat Struct Mol Biol 31: 1251-1264

Released	2024-06-12
Method	ELECTRON MICROSCOPY 1.9 Å
Chain ID	CA [auth La]
Organism	Homo sapiens
Macromolecule	Large ribosomal subunit protein uL15

1 to 25 of 35 Polymer Entities

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