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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Expression Organism = "Gallus gallus"

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Search Summary

This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	Pedobacter heparinus (18)
	Pedobacter heparinus DSM 2366 (5)

Taxonomy

Bacteria (23)

Experimental Method

X-RAY DIFFRACTION (23)

Polymer Entity Type

Protein (23)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (10)
	2.0 - 2.5 (12)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (8)
	2005 - 2009 (4)
	2010 - 2014 (3)
	2015 - 2019 (2)
	2020 - 2024 (5)

Enzyme Classification Name

	Lyases (15)
	Isomerases (3)
	Transferases (2)

Symmetry Type

	Asymmetric (16)
	Cyclic (7)

SCOP Classification

	All beta proteins (9)
	All alpha proteins (5)

AllSelected

1 to 23 of 23 Structures

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1CB8: Entity 1	Download File View File

CHONDROITINASE AC LYASE FROM FLAVOBACTERIUM HEPARINUM

Fethiere, J., Eggimann, B., Cygler, M.

(1999) J Mol Biol 288: 635-647

Released	1999-05-14
Method	X-RAY DIFFRACTION 1.9 Å
Chain ID	A
Organism	Pedobacter heparinus
Macromolecule	PROTEIN (CHONDROITINASE AC)

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1DBG: Entity 1	Download File View File

CRYSTAL STRUCTURE OF CHONDROITINASE B

Huang, W., Matte, A., Li, Y., Kim, Y.S., Linhardt, R.J., Su, H., Cygler, M.

(1999) J Mol Biol 294: 1257-1269

Released	2000-01-12
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Pedobacter heparinus
Macromolecule	CHONDROITINASE B

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1DBO: Entity 1	Download File View File

CRYSTAL STRUCTURE OF CHONDROITINASE B

Huang, W., Matte, A., Li, Y., Kim, Y.S., Linhardt, R.J., Su, H., Cygler, M.

(1999) J Mol Biol 294: 1257-1269

Released	2000-01-12
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Pedobacter heparinus
Macromolecule	CHONDROITINASE B

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1HM2: Entity 1	Download File View File

ACTIVE SITE OF CHONDROITINASE AC LYASE REVEALED BY THE STRUCTURE OF ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS

Huang, W., Boju, L., Tkalec, L., Su, H., Yang, H.O., Gunay, N.S., Linhardt, R.J., Kim, Y.S., Matte, A., Cygler, M.

(2001) Biochemistry 40: 2359-2372

Released	2001-05-02
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Pedobacter heparinus
Macromolecule	CHONDROITINASE AC

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1HM3: Entity 1	Download File View File

ACTIVE SITE OF CHONDROITINASE AC LYASE REVEALED BY THE STRUCTURE OF ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS

Huang, W., Boju, L., Tkalec, L., Su, H., Yang, H.O., Gunay, N.S., Linhardt, R.J., Kim, Y.S., Matte, A., Cygler, M.

(2001) Biochemistry 40: 2359-2372

Released	2001-05-02
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Pedobacter heparinus
Macromolecule	CHONDROITINASE AC

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1HMU: Entity 1	Download File View File

ACTIVE SITE OF CHONDROITINASE AC LYASE REVEALED BY THE STRUCTURE OF ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS

Huang, W., Boju, L., Tkalec, L., Su, H., Yang, H.O., Gunay, N.S., Linhardt, R.J., Kim, Y.S., Matte, A., Cygler, M.

(2001) Biochemistry 40: 2359-2372

Released	2001-05-02
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Pedobacter heparinus
Macromolecule	CHONDROITINASE AC

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1HMW: Entity 1	Download File View File

ACTIVE SITE OF CHONDROITINASE AC LYASE REVEALED BY THE STRUCTURE OF ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS

Huang, W., Boju, L., Tkalec, L., Su, H., Yang, H.O., Gunay, N.S., Linhardt, R.J., Kim, Y.S., Matte, A., Cygler, M.

(2001) Biochemistry 40: 2359-2372

Released	2001-05-02
Method	X-RAY DIFFRACTION 2.3 Å
Chain ID	A
Organism	Pedobacter heparinus
Macromolecule	CHONDROITINASE AC

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1OFL: Entity 1	Download File View File

CRYSTAL STRUCTURE OF CHONDROITINASE B COMPLEXED TO DERMATAN SULFATE HEXASACCHARIDE

Michel, G., Cygler, M.

(2004) J Biol Chem 279: 32882

Released	2004-06-10
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Pedobacter heparinus
Macromolecule	CHONDROITINASE B

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1OFM: Entity 1	Download File View File

CRYSTAL STRUCTURE OF CHONDROITINASE B COMPLEXED TO CHONDROITIN 4-SULFATE TETRASACCHARIDE

Michel, G., Cygler, M.

(2004) J Biol Chem 279: 32882

Released	2004-04-19
Method	X-RAY DIFFRACTION 1.8 Å
Chain ID	A
Organism	Pedobacter heparinus
Macromolecule	CHONDROITINASE B

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2FUQ: Entity 1	Download File View File

Crystal Structure of Heparinase II

Shaya, D., Cygler, M.

(2006) J Biol Chem 281: 15525-15535

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.15 Å
Chain IDs	A, B
Organism	Pedobacter heparinus
Macromolecule	heparinase II protein

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2FUT: Entity 1	Download File View File

Crystal Structure of Heparinase II Complexed with a Disaccharide Product

Shaya, D., Cygler, M.

(2006) J Biol Chem 281: 15525-15535

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	A, B
Organism	Pedobacter heparinus
Macromolecule	heparinase II protein

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3E7J: Entity 1	Download File View File

HeparinaseII H202A/Y257A double mutant complexed with a heparan sulfate tetrasaccharide substrate

Shaya, D., Cygler, M.

(2010) J Biol Chem 285: 20051-20061

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	A, B
Organism	Pedobacter heparinus
Macromolecule	Heparinase II protein

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3E80: Entity 1	Download File View File

Structure of Heparinase II complexed with heparan sulfate degradation disaccharide product

Shaya, D., Cygler, M.

(2010) J Biol Chem 285: 20051-20061

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.35 Å
Chain IDs	A, B, C
Organism	Pedobacter heparinus
Macromolecule	Heparinase II protein

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3WIW: Entity 1	Download File View File

Crystal structure of unsaturated glucuronyl hydrolase specific for heparin

Nakamichi, Y., Mikami, B., Murata, K., Hashimoto, W.

(2014) J Biol Chem 289: 4787-4797

Released	2014-01-08
Method	X-RAY DIFFRACTION 1.35 Å
Chain ID	A
Organism	Pedobacter heparinus DSM 2366
Macromolecule	Glycosyl hydrolase family 88

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4MMH: Entity 1	Download File View File

Crystal structure of heparan sulfate lyase HepC from Pedobacter heparinus

Maruyama, Y., Nakamichi, Y., Mikami, B., Murata, K., Hashimoto, W.

(2014) Biochemistry 53: 777-786

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.2 Å
Chain ID	A
Organism	Pedobacter heparinus
Macromolecule	Heparinase III protein

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4MMI: Entity 1	Download File View File

Crystal structure of heparan sulfate lyase HepC mutant from Pedobacter heparinus

Maruyama, Y., Nakamichi, Y., Mikami, B., Murata, K., Hashimoto, W.

(2014) Biochemistry 53: 777-786

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.4 Å
Chain ID	A
Organism	Pedobacter heparinus
Macromolecule	Heparinase III protein

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5H0J: Entity 1	Download File View File

The crystal structure of WT Pedobacter heparinus SMUG2

Xie, W., Cao, W., Pang, P.

(2017) Biochem J 474: 923-938

Released	2017-01-18
Method	X-RAY DIFFRACTION 1.801 Å
Chain ID	A
Organism	Pedobacter heparinus DSM 2366
Macromolecule	Uncharacterized protein

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5H0K: Entity 1	Download File View File

The crystal structure of WT Pedobacter heparinus SMUG2

Xie, W., Cao, W., Pang, P.

(2017) Biochem J 474: 923-938

Released	2017-01-18
Method	X-RAY DIFFRACTION 2.25 Å
Chain ID	A
Organism	Pedobacter heparinus DSM 2366
Macromolecule	Uncharacterized protein

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6XI9: Entity 1	Download File View File

X-ray crystal structure of MqnE from Pedobacter heparinus in complex with aminofutalosine and methionine

Grove, T.L., Bonanno, J.B., Almo, S.C.

(2020) Biochemistry 59: 2562-2575

Released	2020-07-15
Method	X-RAY DIFFRACTION 2.14 Å
Chain IDs	A, B
Organism	Pedobacter heparinus DSM 2366
Macromolecule	Aminodeoxyfutalosine synthase

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6XIG: Entity 1	Download File View File

X-ray crystal structure of MqnE from Pedobacter heparinus

Grove, T.L., Bonanno, J.B., Almo, S.C.

(2020) Biochemistry 59: 2562-2575

Released	2020-07-15
Method	X-RAY DIFFRACTION 1.59 Å
Chain IDs	A, B
Organism	Pedobacter heparinus DSM 2366
Macromolecule	Aminodeoxyfutalosine synthase

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8BRY: Entity 1	Download File View File

Room-temperature structure of Pedobacter heparinus N-acetylglucosamine 2-epimerase at atmospheric pressure

Lieske, J., Saouane, S., Assmann, M., Zaun, H., Kuballa, J., Meents, A.

To be published

Released	2023-12-13
Method	X-RAY DIFFRACTION 1.5 Å
Chain IDs	A, B
Organism	Pedobacter heparinus
Macromolecule	N-acylglucosamine 2-epimerase

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8BRZ: Entity 1	Download File View File

Room-temperature structure of Pedobacter heparinus N-acetylglucosamine 2-epimerase at 52 MPa helium gas pressure in a sapphire capillary

Lieske, J., Saouane, S., Assmann, M., Zaun, H., Kuballa, J., Meents, A.

To be published

Released	2023-12-13
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	A, B
Organism	Pedobacter heparinus
Macromolecule	N-acylglucosamine 2-epimerase

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8BS0: Entity 1	Download File View File

Room-temperature structure of Pedobacter heparinus N-acetylglucosamine 2-epimerase at 80 MPa helium gas pressure in a sapphire capillary

Lieske, J., Saouane, S., Assmann, M., Zaun, H., Kuballa, J., Meents, A.

To be published

Released	2023-12-13
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	A, B
Organism	Pedobacter heparinus
Macromolecule	N-acylglucosamine 2-epimerase

1 to 23 of 23 Structures

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