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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 3,076 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (3,076)

Scientific Name of Source Organism

	Human immunodeficiency virus 1 (2,321)
	Homo sapiens (785)
	Human immunodeficiency virus type 1 BH10 (211)
	HIV-1 M:B_HXB2R (131)
	synthetic construct (108)
	Macaca mulatta (99)
	Mus musculus (97)
	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE) (94)
	Human immunodeficiency virus type 1 (BRU ISOLATE) (74)
	HIV-1 M:B_ARV2/SF2 (54)

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Taxonomy

	Riboviria (2,964)
	Eukaryota (995)
	Riboviria (RNA viruses and viroids) (123)
	other sequences (108)
	Bacteria (18)
	Archaea (6)
	Duplodnaviria (2)
	unclassified sequences (2)
	Eukaryota (eukaryotes) (1)
	Monodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (2,410)
	ELECTRON MICROSCOPY (467)
	SOLUTION NMR (183)
	SOLID-STATE NMR (10)
	SOLUTION SCATTERING (7)
	NEUTRON DIFFRACTION (6)
	ELECTRON CRYSTALLOGRAPHY (3)
	INFRARED SPECTROSCOPY (2)

Polymer Entity Type

	Protein (3,054)
	DNA (165)
	RNA (78)
	NA-hybrid (12)

Refinement Resolution (Å)

	0.5 - 1.0 (5)
	1.0 - 1.5 (228)
	1.5 - 2.0 (795)
	2.0 - 2.5 (655)
	2.5 - 3.0 (522)
	3.0 - 3.5 (300)
	3.5 - 4.0 (155)
	4.0 - 4.5 (92)
	> 4.5 (131)

Release Date

	1985 - 1989 (2)
	1990 - 1994 (35)
	1995 - 1999 (173)
	2000 - 2004 (231)
	2005 - 2009 (361)
	2010 - 2014 (653)
	2015 - 2019 (706)
	2020 - 2024 (874)
	2025 - 2029 (41)

Enzyme Classification Name

	Transferases (547)
	Hydrolases (853)
	Isomerases (20)
	Lyases (2)
	Translocases (1)
	Ligases (1)

Membrane Protein Annotation

	mpstruc (13)
	OPM (38)
	MemProtMD (12)
	PDBTM (6)

Symmetry Type

	Asymmetric (1,477)
	Cyclic (1,620)
	Dihedral (12)
	Icosahedral (6)
	Tetrahedral (1)

SCOP Classification

	All beta proteins (985)
	Alpha and beta proteins (a/b) (409)
	Multi-domain proteins (alpha and beta) (250)
	All alpha proteins (139)
	Artifacts (148)
	Alpha and beta proteins (a+b) (78)
	Coiled coil proteins (27)
	Peptides (49)
	Small proteins (16)
	Designed proteins (3)

More...

AllSelected

1 to 25 of 3,076 Polymer Entities

Page 1 of 124

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1A1N \| pdb_00001a1n	Download File View File

MHC CLASS I MOLECULE B*3501 COMPLEXED WITH PEPTIDE VPLRPMTY FROM THE NEF PROTEIN (75-82) OF HIV1

Smith, K.J., Reid, S.W., Stuart, D.I., Mcmichael, A.J., Jones, E.Y., Bell, J.I.

(1996) Immunity 4: 203-213

Released	1998-04-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain (protein) PEPTIDE VPLRPMTY (protein)

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1A1O \| pdb_00001a1o	Download File View File

MHC CLASS I MOLECULE B*5301 COMPLEXED WITH PEPTIDE LS6 (KPIVQYDNF) FROM THE MALARIA PARASITE P. FALCIPARUM

Smith, K.J., Reid, S.W., Harlos, K., Mcmichael, A.J., Stuart, D.I., Bell, J.I., Jones, E.Y.

(1996) Immunity 4: 215-228

Released	1998-04-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, BW-53 B*5301 alpha chain (protein) PEPTIDE LS6 (KPIVQYDNF) (protein)

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1A1T \| pdb_00001a1t	Download File View File

STRUCTURE OF THE HIV-1 NUCLEOCAPSID PROTEIN BOUND TO THE SL3 PSI-RNA RECOGNITION ELEMENT, NMR, 25 STRUCTURES

De Guzman, R.N., Wu, Z.R., Stalling, C.C., Pappalardo, L., Borer, P.N., Summers, M.F.

(1998) Science 279: 384-388

Released	1998-06-17
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	NUCLEOCAPSID PROTEIN (protein) SL3 STEM-LOOP RNA (nucleic acid)
Unique Ligands	ZN

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1A30 \| pdb_00001a30	Download File View File

HIV-1 PROTEASE COMPLEXED WITH A TRIPEPTIDE INHIBITOR

Louis, J.M., Dyda, F., Nashed, N.T., Kimmel, A.R., Davies, D.R.

(1998) Biochemistry 37: 2105-2110

Released	1998-04-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein) TRIPEPTIDE GLU-ASP-LEU (protein)

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1A43 \| pdb_00001a43	Download File View File

STRUCTURE OF THE HIV-1 CAPSID PROTEIN DIMERIZATION DOMAIN AT 2.6A RESOLUTION

Worthylake, D.K., Wang, H., Yoo, S., Sundquist, W.I., Hill, C.P.

(1999) Acta Crystallogr D Biol Crystallogr 55: 85-92

Released	1999-02-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 CAPSID (protein)

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1A8G \| pdb_00001a8g	Download File View File

HIV-1 PROTEASE IN COMPLEX WITH SDZ283-910

Kallen, J., Billich, A., Scholz, D., Auer, M., Kungl, A.

(1999) J Mol Biology 286: 1147-1159

Released	1998-07-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	2Z4

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1A8K \| pdb_00001a8k	Download File View File

CRYSTALLOGRAPHIC ANALYSIS OF HUMAN IMMUNODEFICIENCY VIRUS 1 PROTEASE WITH AN ANALOG OF THE CONSERVED CA-P2 SUBSTRATE: INTERACTIONS WITH FREQUENTLY OCCURRING GLUTAMIC ACID RESIDUE AT P2' POSITION OF SUBSTRATES

Weber, I.T., Wu, J., Adomat, J., Harrison, R.W., Kimmel, A.R., Wondrak, E.M., Louis, J.M.

(1997) Eur J Biochem 249: 523-530

Released	1999-01-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV PROTEASE (protein)
Unique Ligands	0Q4

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1A8O \| pdb_00001a8o	Download File View File

HIV CAPSID C-TERMINAL DOMAIN

Gamble, T.R., Yoo, S., Vajdos, F.F., Von Schwedler, U.K., Worthylake, D.K., Wang, H., Mccutcheon, J.P., Sundquist, W.I., Hill, C.P.

(1997) Science 278: 849-853

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV CAPSID (protein)

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1A94 \| pdb_00001a94	Download File View File

STRUCTURAL BASIS FOR SPECIFICITY OF RETROVIRAL PROTEASES

Wu, J., Adomat, J.M., Ridky, T.W., Louis, J.M., Leis, J., Harrison, R.W., Weber, I.T.

(1998) Biochemistry 37: 4518-4526

Released	1999-01-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	PROTEASE (protein)
Unique Ligands	0Q4

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1A9M \| pdb_00001a9m	Download File View File

G48H MUTANT OF HIV-1 PROTEASE IN COMPLEX WITH A PEPTIDIC INHIBITOR U-89360E

Hong, L., Zhang, X.-J., Foundling, S., Hartsuck, J.A., Tang, J.

(1997) FEBS Lett 420: 11-16

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	U0E

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1AAF \| pdb_00001aaf	Download File View File

NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1

Summers, M.F., Henderson, L.E., Chance, M.R., Bess Junior, J.W., South, T.L., Blake, P.R., Sagi, I., Perez-Alvarado, G., Sowder, R.C., Hare, D.R., Arthur, L.O.

(1992) Protein Sci 1: 563-574

Released	1994-01-31
Method	SOLUTION NMR
Organisms	HIV-1 M:B_MN
Macromolecule	HIV-1 NUCLEOCAPSID PROTEIN (protein)
Unique Ligands	ZN

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1AAQ \| pdb_00001aaq	Download File View File

HYDROXYETHYLENE ISOSTERE INHIBITORS OF HUMAN IMMUNODEFICIENCY VIRUS-1 PROTEASE: STRUCTURE-ACTIVITY ANALYSIS USING ENZYME KINETICS, X-RAY CRYSTALLOGRAPHY, AND INFECTED T-CELL ASSAYS

Lewis, M.

(1992) Biochemistry 31: 6646-6659

Released	1994-06-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	PSI

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1ACY \| pdb_00001acy	Download File View File

CRYSTAL STRUCTURE OF THE PRINCIPAL NEUTRALIZING SITE OF HIV-1

Ghiara, J.B., Wilson, I.A.

(1994) Science 264: 82-85

Released	1994-07-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	HIV-1 M:B_MN Mus musculus
Macromolecule	HIV-1 GP120 (MN ISOLATE) (protein) IGG1-KAPPA 59.1 FAB (HEAVY CHAIN) (protein) IGG1-KAPPA 59.1 FAB (LIGHT CHAIN) (protein)

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1AFV \| pdb_00001afv	Download File View File

HIV-1 CAPSID PROTEIN (P24) COMPLEX WITH FAB25.3

Momany, C., Kovari, L.C., Prongay, A.J., Keller, W., Gitti, R.K., Lee, B.M., Gorbalenya, A.E., Tong, L., Mcclure, J., Ehrlich, L.S., Summers, M.F., Carter, C., Rossmann, M.G.

(1996) Nat Struct Biol 3: 763-770

Released	1997-08-20
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Human immunodeficiency virus 1 Mus musculus
Macromolecule	ANTIBODY FAB25.3 FRAGMENT (HEAVY CHAIN) (protein) ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN) (protein) HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN (protein)
Unique Ligands	PB

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1AGB \| pdb_00001agb	Download File View File

ANTAGONIST HIV-1 GAG PEPTIDES INDUCE STRUCTURAL CHANGES IN HLA B8-HIV-1 GAG PEPTIDE (GGRKKYKL-3R MUTATION)

Reid, S.W., Mcadam, S., Smith, K.J., Klenerman, P., O'Callaghan, C.A., Harlos, K., Jakobsen, B.K., Mcmichael, A.J., Bell, J., Stuart, D.I., Jones, E.Y.

(1996) J Exp Medicine 184: 2279-2286

Released	1997-06-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	B*0801 (protein) BETA-2 MICROGLOBULIN (protein) HIV-1 GAG PEPTIDE (GGRKKYKL - 3R MUTATION) (protein)

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1AGC \| pdb_00001agc	Download File View File

ANTAGONIST HIV-1 GAG PEPTIDES INDUCE STRUCTURAL CHANGES IN HLA B8-HIV-1 GAG PEPTIDE (GGKKKYQL-7Q MUTATION)

Reid, S.W., Mcadam, S., Smith, K.J., Klenerman, P., O'Callaghan, C.A., Harlos, K., Jakobsen, B.K., Mcmichael, A.J., Bell, J., Stuart, D.I., Jones, E.Y.

(1996) J Exp Medicine 184: 2279-2286

Released	1997-06-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	B*0801 (protein) BETA-2 MICROGLOBULIN (protein) HIV-1 GAG PEPTIDE (GGKKKYQL - 7Q MUTATION) (protein)

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1AGD \| pdb_00001agd	Download File View File

ANTAGONIST HIV-1 GAG PEPTIDES INDUCE STRUCTURAL CHANGES IN HLA B8-HIV-1 GAG PEPTIDE (GGKKKYKL-INDEX PEPTIDE)

Reid, S.W., Mcadam, S., Smith, K.J., Klenerman, P., O'Callaghan, C.A., Harlos, K., Jakobsen, B.K., Mcmichael, A.J., Bell, J., Stuart, D.I., Jones, E.Y.

(1996) J Exp Medicine 184: 2279-2286

Released	1997-06-16
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	B*0801 (protein) BETA-2 MICROGLOBULIN (protein) HIV-1 GAG PEPTIDE (GGKKKYKL - INDEX PEPTIDE) (protein)

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1AGE \| pdb_00001age	Download File View File

ANTAGONIST HIV-1 GAG PEPTIDES INDUCE STRUCTURAL CHANGES IN HLA B8-HIV-1 GAG PEPTIDE (GGKKKYRL-7R MUTATION)

Reid, S.W., Mcadam, S., Smith, K.J., Klenerman, P., O'Callaghan, C.A., Harlos, K., Jakobsen, B.K., Mcmichael, A.J., Bell, J., Stuart, D.I., Jones, E.Y.

(1996) J Exp Medicine 184: 2279-2286

Released	1997-06-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	B*0801 (protein) BETA-2 MICROGLOBULIN (protein) HIV-1 GAG PEPTIDE (GGKKKYRL - 7R MUTATION) (protein)

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1AGF \| pdb_00001agf	Download File View File

ANTAGONIST HIV-1 GAG PEPTIDES INDUCE STRUCTURAL CHANGES IN HLA B8-HIV-1 GAG PEPTIDE (GGKKRYKL-5R MUTATION)

Reid, S.W., Mcadam, S., Smith, K.J., Klenerman, P., O'Callaghan, C.A., Harlos, K., Jakobsen, B.K., Mcmichael, A.J., Bell, J., Stuart, D.I., Jones, E.Y.

(1996) J Exp Medicine 184: 2279-2286

Released	1997-06-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	B*0801 (protein) BETA-2 MICROGLOBULIN (protein) HIV-1 GAG PEPTIDE (GGKKRYKL - 5R MUTATION) (protein)

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1AI1 \| pdb_00001ai1	Download File View File

HIV-1 V3 LOOP MIMIC

Ghiara, J.B., Wilson, I.A.

(1997) J Mol Biology 266: 31-39

Released	1997-05-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate MN) Mus musculus
Macromolecule	AIB142 (protein) IGG1-KAPPA 59.1 FAB (HEAVY CHAIN) (protein) IGG1-KAPPA 59.1 FAB (LIGHT CHAIN) (protein)

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1AID \| pdb_00001aid	Download File View File

STRUCTURE OF A NON-PEPTIDE INHIBITOR COMPLEXED WITH HIV-1 PROTEASE: DEVELOPING A CYCLE OF STRUCTURE-BASED DRUG DESIGN

Rutenber, E.E., Fauman, E.B., Keenan, R.J., Stroud, R.M.

(1993) J Biological Chem 268: 15343-15346

Released	1997-10-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HUMAN IMMUNODEFICIENCY VIRUS PROTEASE (protein)
Unique Ligands	CL, THK

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1AIK \| pdb_00001aik	Download File View File

HIV GP41 CORE STRUCTURE

Chan, D.C., Fass, D., Berger, J.M., Kim, P.S.

(1997) Cell 89: 263-273

Released	1997-06-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	HIV-1 M:B_HXB2R
Macromolecule	HIV-1 GP41 GLYCOPROTEIN (protein)

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1AJV \| pdb_00001ajv	Download File View File

HIV-1 PROTEASE IN COMPLEX WITH THE CYCLIC SULFAMIDE INHIBITOR AHA006

Backbro, K., Unge, T.

(1997) J Med Chem 40: 898-902

Released	1997-08-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	NMB

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1AJX \| pdb_00001ajx	Download File View File

HIV-1 PROTEASE IN COMPLEX WITH THE CYCLIC UREA INHIBITOR AHA001

Backbro, K., Unge, T.

(1997) J Med Chem 40: 898-902

Released	1997-09-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	AH1

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1AK4 \| pdb_00001ak4	Download File View File

HUMAN CYCLOPHILIN A BOUND TO THE AMINO-TERMINAL DOMAIN OF HIV-1 CAPSID

Hill, C.P., Gamble, T.R., Vajdos, F.F., Worthylake, D.K., Sundquist, W.I.

(1996) Cell 87: 1285-1294

Released	1997-10-15
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	CYCLOPHILIN A (protein) HIV-1 CAPSID (protein)

1 to 25 of 3,076 Polymer Entities

Page 1 of 124

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A1N | pdb_00001a1n

1A1O | pdb_00001a1o

1A1T | pdb_00001a1t

1A30 | pdb_00001a30

1A43 | pdb_00001a43

1A8G | pdb_00001a8g

1A8K | pdb_00001a8k

1A8O | pdb_00001a8o

1A94 | pdb_00001a94

1A9M | pdb_00001a9m

1AAF | pdb_00001aaf

1AAQ | pdb_00001aaq

1ACY | pdb_00001acy

1AFV | pdb_00001afv

1AGB | pdb_00001agb

1AGC | pdb_00001agc

1AGD | pdb_00001agd

1AGE | pdb_00001age

1AGF | pdb_00001agf

1AI1 | pdb_00001ai1

1AID | pdb_00001aid

1AIK | pdb_00001aik

1AJV | pdb_00001ajv

1AJX | pdb_00001ajx

1AK4 | pdb_00001ak4