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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Scientific Name of the Source Organism = "Mycoplasmoides pneumoniae"

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Search Summary

This query matches 1,897 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (1,897)

Scientific Name of Source Organism

	Mycoplasmoides pneumoniae M129 (1,879)
	Mycoplasmoides pneumoniae (15)
	Mycoplasmoides pneumoniae 19294 (3)

Taxonomy

Bacteria (1,897)

Experimental Method

	ELECTRON MICROSCOPY (1,869)
	X-RAY DIFFRACTION (27)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (1,740)
	RNA (157)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (7)
	2.5 - 3.0 (53)
	3.0 - 3.5 (118)
	3.5 - 4.0 (134)
	4.0 - 4.5 (1)
	> 4.5 (1,579)

Release Date

	2000 - 2004 (11)
	2005 - 2009 (5)
	2015 - 2019 (4)
	2020 - 2024 (1,877)

Enzyme Classification Name

	Isomerases (5)
	Transferases (5)
	Ligases (4)
	Oxidoreductases (3)
	Hydrolases (2)
	Lyases (1)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (1,885)
	Cyclic (13)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (5)
	All beta proteins (3)
	Artifacts (4)
	Alpha and beta proteins (a+b) (3)
	All alpha proteins (2)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 1,897 Polymer Entities

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1KNX: Entity 1	Download File View File

HPr kinase/phosphatase from Mycoplasma pneumoniae

Allen, G.S.

(2003) J Mol Biol 326: 1203-1217

Released	2002-12-31
Method	X-RAY DIFFRACTION 2.5 Å
Chain IDs	A, B, C, D, E
Organism	Mycoplasmoides pneumoniae
Macromolecule	Probable HPr(Ser) kinase/phosphatase

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1LQL: Entity 1	Download File View File

Crystal structure of OsmC like protein from Mycoplasma pneumoniae

Choi, I.-G., Shin, D.H., Brandsen, J., Jancarik, J., Kim, R., Yokota, H., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2003) J Struct Funct Genomics 4: 31-34

Released	2003-08-05
Method	X-RAY DIFFRACTION 2.85 Å
Chain IDs	A, B, C, D, E More (10)
Organism	Mycoplasmoides pneumoniae
Macromolecule	osmotical inducible protein C like family

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1N0E: Entity 1	Download File View File

CRYSTAL STRUCTURE OF A CELL DIVISION AND CELL WALL BIOSYNTHESIS PROTEIN UPF0040 FROM MYCOPLASMA PNEUMONIAE: INDICATION OF A NOVEL FOLD WITH A POSSIBLE NEW CONSERVED SEQUENCE MOTIF

Chen, S., Jancrick, J., Yokota, H., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2004) Proteins 55: 785-791

Released	2003-10-21
Method	X-RAY DIFFRACTION 2.7 Å
Chain IDs	A, B, C, D, E
Organism	Mycoplasmoides pneumoniae
Macromolecule	Protein mraZ

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1N0F: Entity 1	Download File View File

CRYSTAL STRUCTURE OF A CELL DIVISION AND CELL WALL BIOSYNTHESIS PROTEIN UPF0040 FROM MYCOPLASMA PNEUMONIAE: INDICATION OF A NOVEL FOLD WITH A POSSIBLE NEW CONSERVED SEQUENCE MOTIF

Chen, S., Jancrick, J., Yokota, H., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2004) Proteins 55: 785-791

Released	2003-10-21
Method	X-RAY DIFFRACTION 2.8 Å
Chain IDs	A, B, C, D, E
Organism	Mycoplasmoides pneumoniae
Macromolecule	Protein mraZ

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1N0G: Entity 1	Download File View File

Crystal Structure of A Cell Division and Cell Wall Biosynthesis Protein UPF0040 from Mycoplasma pneumoniae: Indication of A Novel Fold with A Possible New Conserved Sequence Motif

Chen, S., Jancarik, J., Yokota, H., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2004) Proteins 55: 785-791

Released	2003-10-21
Method	X-RAY DIFFRACTION 2.8 Å
Chain IDs	A, B
Organism	Mycoplasmoides pneumoniae
Macromolecule	Protein mraZ

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1PA4: Entity 1	Download File View File

Solution structure of a putative ribosome-binding factor from Mycoplasma pneumoniae (MPN156)

Rubin, S.M., Pelton, J.G., Yokota, H., Kim, R., Wemmer, D.E., Berkeley Structural Genomics Center (BSGC)

(2003) J Struct Funct Genomics 4: 235-243

Released	2004-03-02
Method	SOLUTION NMR
Chain ID	A
Organism	Mycoplasmoides pneumoniae
Macromolecule	Probable ribosome-binding factor A

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1SBQ: Entity 1	Download File View File

Crystal Structure of methenyltetrahydrofolate synthetase from Mycoplasma pneumoniae at 2.2 resolution

Chen, S., Shin, D.H., Pufan, R., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2004) Proteins 56: 839-843

Released	2004-08-10
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	A, B
Organism	Mycoplasmoides pneumoniae
Macromolecule	5,10-Methenyltetrahydrofolate synthetase homolog

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1T71: Entity 1	Download File View File

Crystal structure of a novel phosphatase Mycoplasma pneumoniaefrom

Shin, D.H., Jancarik, J., Kim, R., Yokota, H., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

To be published

Released	2004-12-07
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Mycoplasmoides pneumoniae M129
Macromolecule	phosphatase

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1TD6: Entity 1	Download File View File

Crystal structure of the conserved hypothetical protein MP506/MPN330 (gi: 1674200)from Mycoplasma pneumoniae

Das, D., Oganesyan, N., Yokota, H., Jancarik, J., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2004) Proteins 58: 504-508

Released	2004-12-07
Method	X-RAY DIFFRACTION 2.5 Å
Chain ID	A
Organism	Mycoplasmoides pneumoniae
Macromolecule	Hypothetical protein MG237 homolog

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1U3F: Entity 1	Download File View File

Structural and Functional Characterization of a 5,10-Methenyltetrahydrofolate Synthetase from Mycoplasma pneumoniae (GI: 13508087)

Chen, S., Yakunin, A.F., Proudfoot, M., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2004) Proteins 56: 839-843

Released	2004-12-07
Method	X-RAY DIFFRACTION 2.5 Å
Chain IDs	A, B
Organism	Mycoplasmoides pneumoniae
Macromolecule	5,10-Methenyltetrahydrofolate Synthetase

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1U3G: Entity 1	Download File View File

Structural and Functional Characterization of a 5,10-Methenyltetrahydrofolate Synthetase from Mycoplasma pneumoniae (GI: 13508087)

Chen, S., Yakunin, A.F., Proudfoot, M., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2004) Proteins 56: 839-843

Released	2004-12-07
Method	X-RAY DIFFRACTION 2.5 Å
Chain ID	A
Organism	Mycoplasmoides pneumoniae
Macromolecule	5,10-Methenyltetrahydrofolate Synthetase

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1ZXJ: Entity 1	Download File View File

Crystal structure of the hypthetical Mycoplasma protein, MPN555

Schulze-Gahmen, U., Aono, S., Shengfeng, C., Yokota, H., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2005) Acta Crystallogr D Biol Crystallogr 61: 1343-1347

Released	2005-07-26
Method	X-RAY DIFFRACTION 2.8 Å
Chain IDs	A, B, C, D
Organism	Mycoplasmoides pneumoniae
Macromolecule	Hypothetical protein MG377 homolog

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2BA2: Entity 1	Download File View File

Crystal structure of the DUF16 domain of MPN010 from Mycoplasma pneumoniae

Shin, D.H., Kim, J.-S., Yokota, H., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2006) Protein Sci 15: 921-928

Released	2006-03-07
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A, B, C
Organism	Mycoplasmoides pneumoniae
Macromolecule	Hypothetical UPF0134 protein MPN010

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2HQL: Entity 1	Download File View File

Crystal structure of a small single-stranded DNA binding protein from Mycoplasma pneumoniae

Das, D., Berkeley Structural Genomics Center (BSGC)

(2007) Proteins 67: 776-782

Released	2007-05-01
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, B, C, D, E
Organism	Mycoplasmoides pneumoniae
Macromolecule	Hypothetical protein MG376 homolog

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2I15: Entity 1	Download File View File

Crystal structure of MPN423 from Mycoplasma pneumoniae

Shin, D.H., Yokota, H., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

To be published

Released	2006-10-10
Method	X-RAY DIFFRACTION 2.4 Å
Chain IDs	A, B, C
Organism	Mycoplasmoides pneumoniae
Macromolecule	Hypothetical protein MG296 homolog

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2YY5: Entity 1	Download File View File

Crystal Structure of tryptophanyl-tRNA synthetase from Mycoplasma pneumoniae

Ishii, T., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-04-29
Method	X-RAY DIFFRACTION 2.55 Å
Chain IDs	A, B, C, D
Organism	Mycoplasmoides pneumoniae M129
Macromolecule	Tryptophanyl-tRNA synthetase

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4TLV: Entity 1	Download File View File

CARDS TOXIN, NICKED

Taylor, A.B., Pakhomova, O.N., Hart, P.J.

(2015) Proc Natl Acad Sci U S A 112: 5165-5170

Released	2015-04-08
Method	X-RAY DIFFRACTION 1.9 Å
Chain IDs	B, F, A, C, D
Organism	Mycoplasmoides pneumoniae M129
Macromolecule	ADP-ribosylating toxin CARDS

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4TLW: Entity 1	Download File View File

CARDS TOXIN, FULL-LENGTH

Becker, A., GALALELDEEN, A., Taylor, A.B., Hart, P.J.

(2015) Proc Natl Acad Sci U S A 112: 5165-5170

Released	2015-04-08
Method	X-RAY DIFFRACTION 2.55 Å
Chain ID	A
Organism	Mycoplasmoides pneumoniae M129
Macromolecule	ADP-ribosylating toxin CARDS

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4X9M: Entity 1	Download File View File

Oxidized L-alpha-Glycerophosphate Oxidase from Mycoplasma pneumoniae with FAD bound

Elkhal, C.K., Kean, K.M., Parsonage, D., Claiborne, A., Karplus, P.A.

(2015) FEBS J 282: 3030-3042

Released	2015-03-04
Method	X-RAY DIFFRACTION 2.4 Å
Chain ID	A
Organism	Mycoplasmoides pneumoniae M129
Macromolecule	L-alpha-glycerophosphate oxidase

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4X9N: Entity 1	Download File View File

Dithionite reduced L-alpha-Glycerophosphate Oxidase from Mycoplasma pneumoniae with FAD bound

Elkhal, C.K., Kean, K.M., Parsonage, D., Claiborne, A., Karplus, P.A.

(2015) FEBS J 282: 3030-3042

Released	2015-03-04
Method	X-RAY DIFFRACTION 2.499 Å
Chain ID	A
Organism	Mycoplasmoides pneumoniae M129
Macromolecule	L-alpha-glycerophosphate oxidase

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6RC9: Entity 1	Download File View File

P1 Mycoplasma pneumoniae

Vizarraga, D., Aparicio, D., Illanes, R., Fita, I.

(2020) Nat Commun 11: 5188-5188

Released	2020-11-04
Method	X-RAY DIFFRACTION 1.94 Å
Chain ID	A
Organism	Mycoplasmoides pneumoniae M129
Macromolecule	Adhesin P1

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6RJ1: Entity 1	Download File View File

N-Domain P40/P90 Mycoplasma pneumoniae

Vizarraga, D., Aparicio, D., Illanes, R., Fita, I.

(2020) Nat Commun 11: 5188-5188

Released	2020-11-04
Method	X-RAY DIFFRACTION 2.65 Å
Chain IDs	A, B
Organism	Mycoplasmoides pneumoniae M129
Macromolecule	Mgp-operon protein 3

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6TLZ: Entity 1	Download File View File

N-Domain P40/P90 Mycoplasma pneumoniae complexed with 3'SL

Vizarraga, D., Aparicio, D., Illanes, R., Fita, I., Perez-Luque, R., Martin, J.

(2020) Nat Commun 11: 5188-5188

Released	2020-11-04
Method	X-RAY DIFFRACTION 3.1 Å
Chain IDs	A, B
Organism	Mycoplasmoides pneumoniae M129
Macromolecule	Mgp-operon protein 3

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6TM0: Entity 1	Download File View File

N-Domain P40/P90 Mycoplasma pneumoniae complexed with 6'SL

Vizarraga, D., Aparicio, D., Illanes, R., Fita, I., Perez-Luque, R., Martin, J.

(2020) Nat Commun 11: 5188-5188

Released	2020-11-04
Method	X-RAY DIFFRACTION 2.8 Å
Chain IDs	A, B
Organism	Mycoplasmoides pneumoniae M129
Macromolecule	Mgp-operon protein 3

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7BWM: Entity 1	Download File View File

Cryo-EM structure of the human pathogen Mycoplasma pneumoniae P1

Kawamoto, A., Kenri, T., Namba, K., Miyata, M.

(2020) Nat Commun 11: 5188-5188

Released	2020-10-28
Method	ELECTRON MICROSCOPY 2.9 Å
Chain ID	A
Organism	Mycoplasmoides pneumoniae M129
Macromolecule	Adhesin P1

1 to 25 of 1,897 Polymer Entities

Page 1 of 76

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