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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "E5M78_19105"

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Search Summary

This query matches 29 Structures.

Refinements

Structure Determination Methodology

experimental (29)

Scientific Name of Source Organism

	Homo sapiens (29)
	Xenopus laevis (5)
	Anolis carolinensis (4)
	synthetic construct (4)
	Neogale vison (1)

Taxonomy

	Eukaryota (29)
	other sequences (4)

Experimental Method

	ELECTRON MICROSCOPY (18)
	X-RAY DIFFRACTION (11)

Polymer Entity Type

	Protein (29)
	DNA (6)
	RNA (2)

Refinement Resolution (Å)

	2.5 - 3.0 (7)
	3.0 - 3.5 (8)
	3.5 - 4.0 (8)
	4.0 - 4.5 (4)
	> 4.5 (2)

Release Date

	2015 - 2019 (11)
	2020 - 2024 (13)
	2025 - 2029 (5)

Enzyme Classification Name

Transferases (26)

Symmetry Type

	Asymmetric (26)
	Cyclic (3)

AllSelected

1 to 25 of 29 Structures

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4W2R \| pdb_00004w2r	Download File View File

Structure of Hs/AcPRC2 in complex with 5,8-dichloro-2-[(4-methoxy-6-methyl-2-oxo-1,2-dihydropyridin-3-yl)methyl]-7-[(R)-methoxy(oxetan-3-yl)methyl]-3,4-dihydroisoquinolin-1(2H)-one

Gajiwala, K.S., Brooun, A., Liu, W., Deng, Y., Stewart, A.E.

(2018) J Med Chem 61: 650-665

Released	2017-12-27
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Anolis carolinensis Homo sapiens
Macromolecule	Enhancer of zeste 2 polycomb repressive complex 2 subunit (protein) Polycomb protein EED (protein) Polycomb protein SUZ12 (protein)
Unique Ligands	CJD, ZN

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5HYN \| pdb_00005hyn	Download File View File

Structure of Human Polycomb Repressive Complex 2 (PRC2) with oncogenic histone H3K27M peptide

Zhang, Y., Justin, N., Wilson, J.R., Gamblin, S.J.

(2016) Nat Commun 7: 11316-11316

Released	2016-05-11
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	H3K27M (protein) Histone-lysine N-methyltransferase EZH2 (protein) JARID2 K116me3 (protein) Polycomb protein EED (protein) Polycomb protein SUZ12 (protein)
Unique Ligands	SAH, ZN

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5IJ7 \| pdb_00005ij7	Download File View File

Structure of Hs/AcPRC2 in complex with a pyridone inhibitor

Gajiwala, K.S., Brooun, A., Deng, Y.-L., Liu, W.

(2016) Nat Commun 7: 11384-11384

Released	2016-05-04
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Anolis carolinensis Homo sapiens
Macromolecule	Enhancer of Zeste Homolog 2 (EZH2),Histone-lysine N-methyltransferase EZH2 (protein) Polycomb protein EED (protein) Polycomb protein SUZ12 (protein)
Unique Ligands	6BN, ZN

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5IJ8 \| pdb_00005ij8	Download File View File

Structure of the primary oncogenic mutant Y641N Hs/AcPRC2 in complex with a pyridone inhibitor

Gajiwala, K.S., Brooun, A., Deng, Y.-L., Liu, W.

(2016) Nat Commun 7: 11384-11384

Released	2016-05-04
Method	X-RAY DIFFRACTION 2.99 Å
Organisms	Anolis carolinensis Homo sapiens
Macromolecule	Enhancer of Zeste Homolog 2 (EZH2),Histone-lysine N-methyltransferase EZH2 (protein) Polycomb protein EED (protein) Polycomb protein SUZ12 (protein)
Unique Ligands	6BN, ZN

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5LS6 \| pdb_00005ls6	Download File View File

Structure of Human Polycomb Repressive Complex 2 (PRC2) with inhibitor

Zhang, Y., Justin, N., Chen, S., Wilson, J., Gamblin, S.

(2016) J Med Chem 59: 9928-9941

Released	2017-02-22
Method	X-RAY DIFFRACTION 3.47 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase EZH2,Histone-lysine N-methyltransferase EZH2,Histone-lysine N-methyltransferase EZH2 (protein) Jarid2 K116me3 (protein) Polycomb protein EED (protein) Polycomb protein SUZ12 (protein)
Unique Ligands	74D, ZN

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5WAI \| pdb_00005wai	Download File View File

Crystal Structure of a Suz12-Rbbp4-Jarid2-Aebp2 Heterotetrameric Complex

Chen, S., Jiao, L., Liu, X.

(2018) Mol Cell 69: 840-852.e5

Released	2018-03-14
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Neogale vison
Macromolecule	Histone-binding protein RBBP4 (protein) Jumonji, AT-rich interactive domain 2 (protein) Polycomb protein SUZ12 (protein) Zinc finger protein AEBP2 (protein)
Unique Ligands	ZN

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5WAK \| pdb_00005wak	Download File View File

Crystal Structure of a Suz12-Rbbp4 Binary Complex

Chen, S., Jiao, L., Liu, X.

(2018) Mol Cell 69: 840-852.e5

Released	2018-03-14
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Histone-binding protein RBBP4 (protein) Polycomb protein SUZ12 (protein)
Unique Ligands	ZN

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5WG6 \| pdb_00005wg6	Download File View File

Human Polycomb Repressive Complex 2 in complex with GSK126 inhibitor

Bratkowski, M.A., Liu, X.

(2018) Sci Rep 8: 9092-9092

Released	2018-06-27
Method	X-RAY DIFFRACTION 3.901 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase EZH2,Polycomb protein SUZ12 (E.C.2.1.1.43) chimera (protein) Polycomb protein EED (protein)
Unique Ligands	A9G, ZN

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6B3W \| pdb_00006b3w	Download File View File

Structure of Hs/AcPRC2 in complex with 5,8-dichloro-7-(3,5-dimethyl-1,2-oxazol-4-yl)-2-[(4,6-dimethyl-2-oxo-1,2-dihydropyridin-3-yl)methyl]-3,4-dihydroisoquinolin-1(2H)-one

Gajiwala, K.S., Brooun, A., Liu, W., Deng, Y., Stewart, A.E.

(2018) J Med Chem 61: 650-665

Released	2017-12-27
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Anolis carolinensis Homo sapiens
Macromolecule	Enhancer of zeste 2 polycomb repressive complex 2 subunit,Enhancer of zeste 2 polycomb repressive complex 2 subunit (protein) Polycomb protein EED (protein) Polycomb protein SUZ12 (protein)
Unique Ligands	CJG, ZN

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6C23 \| pdb_00006c23	Download File View File

Cryo-EM structure of PRC2 bound to cofactors AEBP2 and JARID2 in the Compact Active State

Kasinath, V., Faini, M., Poepsel, S., Reif, D., Feng, A., Stjepanovic, G., Aebersold, R., Nogales, E.

(2018) Science 359: 940-944

Released	2018-01-24
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 9

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6C24 \| pdb_00006c24	Download File View File

Cryo-EM structure of PRC2 bound to cofactors AEBP2 and JARID2 in the Extended Active State

Kasinath, V., Faini, M., Poepsel, S., Reif, D., Feng, A., Stjepanovic, G., Aebersold, R., Nogales, E.

(2018) Science 359: 940-944

Released	2018-01-24
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 9

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6NQ3 \| pdb_00006nq3	Download File View File

Crystal Structure of a SUZ12-RBBP4-PHF19-JARID2 Heterotetrameric Complex

Chen, S., Jiao, L., Liu, X.

(2020) Mol Cell 77: 1265

Released	2020-01-29
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Homo sapiens
Macromolecule	Histone-binding protein RBBP4 (protein) PHD finger protein 19 (protein) Polycomb protein SUZ12 (protein) Protein Jumonji (protein)
Unique Ligands	ZN

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6WKR \| pdb_00006wkr	Download File View File

PRC2-AEBP2-JARID2 bound to H2AK119ub1 nucleosome

Kasinath, V., Nogales, E., Beck, C., Sauer, P., Poepsel, S., Kosmatka, J., Faini, M., Toso, D., Aebersold, R.

(2021) Science 371:

Released	2021-02-03
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	Unique protein chains: 11 Unique nucleic acid chains: 1
Unique Ligands	MG, SAH, ZN

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7AT8 \| pdb_00007at8	Download File View File

Histone H3 recognition by nucleosome-bound PRC2 subunit EZH2.

Finogenova, K., Benda, C., Schaefer, I.B., Poepsel, S., Strauss, M., Mueller, J.

(2020) Elife 9:

Released	2020-12-09
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Homo sapiens Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	SAH, ZN

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7KSO \| pdb_00007kso	Download File View File

Cryo-EM structure of PRC2:EZH1-AEBP2-JARID2

Grau, D.J., Armache, K.J.

(2021) Nat Commun 12: 714-714

Released	2021-02-03
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	ZN

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7KSR \| pdb_00007ksr	Download File View File

PRC2:EZH1_A from a dimeric PRC2 bound to a nucleosome

Grau, D.J., Armache, K.J.

(2021) Nat Commun 12: 714-714

Released	2021-02-03
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Homo sapiens
Macromolecule	Histone-binding protein RBBP4 (protein) Histone-lysine N-methyltransferase EZH1 (protein) Polycomb protein EED (protein) Polycomb protein SUZ12 (protein)
Unique Ligands	ZN

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7KTP \| pdb_00007ktp	Download File View File

PRC2:EZH1_B from a dimeric PRC2 bound to a nucleosome

Grau, D.J., Armache, K.J.

(2021) Nat Commun 12: 714-714

Released	2021-02-03
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Homo sapiens
Macromolecule	Histone-binding protein RBBP4 (protein) Histone-lysine N-methyltransferase EZH1 (protein) Polycomb protein EED (protein) Polycomb protein SUZ12 (protein)
Unique Ligands	ZN

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7TD5 \| pdb_00007td5	Download File View File

Structure of human PRC2-EZH1 containing phosphorylated SUZ12

Gong, L., Jiao, L., Liu, X.

(2022) Nat Commun 13: 6781-6781

Released	2022-11-16
Method	X-RAY DIFFRACTION 2.994 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase EZH1 (protein) Polycomb protein EED (protein) Polycomb protein SUZ12 (protein) THR-LYS-ALA-ALA-ARG-M3L-SER-ALA-PRO-ALA (protein) THR-LYS-ALA-ALA-ARG-MET-SER-ALA-PRO-SER (protein)
Unique Ligands	SAM, ZN

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8EQV \| pdb_00008eqv	Download File View File

Cryo-EM structure of PRC2 in complex with the long isoform of AEBP2

Boudes, M., Zhang, Q., Flanigan, S.F., Davidovich, C.

To be published

Released	2024-07-31
Method	ELECTRON MICROSCOPY 3.64 Å
Organisms	Homo sapiens
Macromolecule	Histone-binding protein RBBP4 (protein) Histone-lysine N-methyltransferase EZH2 (protein) Polycomb protein EED (protein) Polycomb protein SUZ12 (protein) Zinc finger protein AEBP2 (protein)

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8FYH \| pdb_00008fyh	Download File View File

G4 RNA-mediated PRC2 dimer

Song, J., Kasinath, V.

(2023) Science 381: 1331-1337

Released	2023-10-04
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 1
Unique Ligands	ZN

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8T9G \| pdb_00008t9g	Download File View File

Automethylated PRC2 dimer bound to nucleosome

Sauer, P.V., Pavlenko, E., Nogales, E., Poepsel, S.

(2024) Mol Cell 84: 3885-3898.e8

Released	2024-09-25
Method	ELECTRON MICROSCOPY 6.2 Å
Organisms	Homo sapiens Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	SAH

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8TAS \| pdb_00008tas	Download File View File

PRC2 monomer bound to nucleosome

Sauer, P.V., Pavlenko, E., Nogales, E., Poepsel, S.

(2024) Mol Cell 84: 3885-3898.e8

Released	2024-09-25
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Homo sapiens Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 9 Unique nucleic acid chains: 2
Unique Ligands	SAH

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8TB9 \| pdb_00008tb9	Download File View File

PRC2-J119-450 monomer bound to H1-nucleosome

Sauer, P.V., Cookis, T., Pavlenko, E., Nogales, E., Poepsel, S.

(2024) Mol Cell 84: 3885-3898.e8

Released	2024-09-25
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 11 Unique nucleic acid chains: 2
Unique Ligands	SAH