RCSB PDB: Search

1AI1 \| pdb_00001ai1	Download File View File

HIV-1 V3 LOOP MIMIC

Ghiara, J.B., Wilson, I.A.

(1997) J Mol Biology 266: 31-39

Released	1997-05-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate MN) Mus musculus
Macromolecule	AIB142 (protein) IGG1-KAPPA 59.1 FAB (HEAVY CHAIN) (protein) IGG1-KAPPA 59.1 FAB (LIGHT CHAIN) (protein)

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1B03 \| pdb_00001b03	Download File View File

SOLUTION STRUCTURE OF THE ANTIBODY-BOUND HIV-1IIIB V3 PEPTIDE

Tugarinov, V., Zvi, A., Levy, R., Anglister, J.

(1999) Nat Struct Biol 6: 331-335

Released	1998-11-25
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1
Macromolecule	PROTEIN (P1053 PEPTIDE) (protein)

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1CE4 \| pdb_00001ce4	Download File View File

CONFORMATIONAL MODEL FOR THE CONSENSUS V3 LOOP OF THE ENVELOPE PROTEIN GP120 OF HIV-1

Vranken, W.F., Fant, F., Budesinsky, M., Borremans, F.A.M.

(1995) FEBS Lett 374: 117-121

Released	1999-03-18
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate JRCSF)
Macromolecule	PROTEIN (V3 LOOP OF HIV-1 ENVELOPE PROTEIN) (protein)

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1ENV \| pdb_00001env	Download File View File

ATOMIC STRUCTURE OF THE ECTODOMAIN FROM HIV-1 GP41

Weissenhorn, W., Dessen, A., Harrison, S.C., Skehel, J.J., Wiley, D.C.

(1997) Nature 387: 426-430

Released	1997-11-19
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Human immunodeficiency virus 1 Saccharomyces cerevisiae
Macromolecule	HIV-1 ENVELOPE PROTEIN CHIMERA CONSISTING OF A FRAGMENT OF GCN4 ZIPPER CLONED N-TERMINAL TO TWO FRAGMENTS OF GP41 (protein)

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1ERF \| pdb_00001erf	Download File View File

CONFORMATIONAL MAPPING OF THE N-TERMINAL FUSION PEPTIDE OF HIV-1 GP41 USING 13C-ENHANCED FOURIER TRANSFORM INFRARED SPECTROSCOPY (FTIR)

Gordon, L.M., Mobley, P.W., Pilpa, R., Sherman, M.A., Waring, A.J.

(2002) Biochim Biophys Acta 1559: 96-120

Released	2000-05-03
Method	INFRARED SPECTROSCOPY
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI)
Macromolecule	TRANSMEMBRANE GLYCOPROTEIN (protein)

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1FAV \| pdb_00001fav	Download File View File

THE STRUCTURE OF AN HIV-1 SPECIFIC CELL ENTRY INHIBITOR IN COMPLEX WITH THE HIV-1 GP41 TRIMERIC CORE

Zhou, G., Ferrer, M., Chopra, R., Strassmaier, T., Weissenhorn, W., Skehel, J.J., Oprian, D., Schreiber, S.L., Harrison, S.C., Wiley, D.C.

(2000) Bioorg Med Chem 8: 2219-2227

Released	2000-08-23
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human immunodeficiency virus 1 Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) Saccharomyces cerevisiae S288C
Macromolecule	HIV-1 ENVELOPE PROTEIN CHIMERA (protein) PROTEIN (TRANSMEMBRANE GLYCOPROTEIN) (protein)

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1GC1 \| pdb_00001gc1	Download File View File

HIV-1 GP120 CORE COMPLEXED WITH CD4 AND A NEUTRALIZING HUMAN ANTIBODY

Kwong, P.D., Wyatt, R., Robinson, J., Sweet, R.W., Sodroski, J., Hendrickson, W.A.

(1998) Nature 393: 648-659

Released	1998-07-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ANTIBODY 17B (protein) CD4 (protein) ENVELOPE PROTEIN GP120 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, NAG

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1GGI \| pdb_00001ggi	Download File View File

CRYSTAL STRUCTURE OF AN HIV-1 NEUTRALIZING ANTIBODY 50.1 IN COMPLEX WITH ITS V3 LOOP PEPTIDE ANTIGEN

Stanfield, R.L., Rini, J.M., Wilson, I.A.

(1993) Proc Natl Acad Sci U S A 90: 6325-6329

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate MN) Mus musculus
Macromolecule	HIV-1 V3 LOOP PEPTIDE ANTIGEN (protein) IGG2A 50.1 FAB (HEAVY CHAIN) (protein) IGG2A 50.1 FAB (LIGHT CHAIN) (protein)

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1IM7 \| pdb_00001im7	Download File View File

Solution structure of synthetic cyclic peptide mimicking the loop of HIV-1 gp41 glycoprotein envelope

Phan Chan Du, A., Limal, D., Semetey, V., Dali, H., Jolivet, M., Desgranges, C., Cung, M.T., Briand, J.P., Petit, M.C., Muller, S.

(2002) J Mol Biology 323: 503-521

Released	2002-10-23
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate BRVA)
Macromolecule	GP41-PARENT PEPTIDE ACE-ILE-TRP-GLY-CYS-SER-GLY-LYS-LEU-ILE-CYS-THR-THR-ALA (protein)

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1J8N \| pdb_00001j8n	Download File View File

Solution structure of beta3-analogue peptide corresponding to the gp41 600-612 loop of HIV.

Phan Chan Du, A., Limal, D., Semetey, V., Dali, H., Jolivet, M., Desgranges, C., Cung, M.T., Briand, J.P., Petit, M.C., Muller, S.

(2002) J Mol Biology 323: 503-521

Released	2003-07-01
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate BRVA)
Macromolecule	HIV1 GP41 HSER analogue peptide Ace-Ile-Trp-Gly-Cys-beta3Ser-Gly-Lys-Leu-Ile-Cys-Thr-Thr-Ala (protein)

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1J8Z \| pdb_00001j8z	Download File View File

Solution structure of beta3 analogue peptide (HCYS) of HIV gp41 600-612 loop.

Phan Chan Du, A., Limal, D., Semetey, V., Dali, H., Jolivet, M., Desgranges, C., Cung, M.T., Briand, J.P., Petit, M.C., Muller, S.

(2002) J Mol Biology 323: 503-521

Released	2003-07-01
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate BRVA)
Macromolecule	HCYS BETA3-CYS ANALOGUE OF HIV GP41 (protein)

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1J9V \| pdb_00001j9v	Download File View File

Solution structure of a lactam analogue (DabD) of HIV gp41 600-612 loop.

Phan Chan Du, A., Limal, D., Semetey, V., Dali, H., Jolivet, M., Desgranges, C., Cung, M.T., Briand, J.P., Petit, M.C., Muller, S.

(2002) J Mol Biology 323: 503-521

Released	2003-07-01
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate BRVA)
Macromolecule	DabD (Ace)IWG(DAB)SGKLIDTTA ANALOGUE OF HIV GP41 (protein)

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1JAA \| pdb_00001jaa	Download File View File

Solution structure of lactam analogue (DapE) of HIV gp41 600-612 loop.

Phan Chan Du, A., Limal, D., Semetey, V., Dali, H., Jolivet, M., Desgranges, C., Cung, M.T., Briand, J.P., Petit, M.C., Muller, S.

(2002) J Mol Biology 323: 503-521

Released	2003-07-01
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate BRVA)
Macromolecule	DapE : (Ace)IWG(Dap)SGKLIETTA ANALOGUE OF HIV GP41 (protein)

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1JAR \| pdb_00001jar	Download File View File

Solution structure of lactam analogue (DDab)of HIV gp41 600-612 loop.

Phan Chan Du, A., Limal, D., Semetey, V., Dali, H., Jolivet, M., Desgranges, C., Cung, M.T., Briand, J.P., Petit, M.C., Muller, S.

(2002) J Mol Biology 323: 503-521

Released	2003-07-01
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate BRVA)
Macromolecule	DDab: (ACE)IWGDSGKLI(DAB)TTA ANALOGUE OF HIV GP41 (protein)

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1JAU \| pdb_00001jau	Download File View File

NMR Solution Structure of the Trp-Rich Peptide of HIV gp41 Bound to DPC Micelles

Schibli, D.J., Montelaro, R.C., Vogel, H.J.

(2001) Biochemistry 40: 9570-9578

Released	2001-10-17
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate HXB3)
Macromolecule	TRANSMEMBRANE GLYCOPROTEIN (GP41) (protein)

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1JAV \| pdb_00001jav	Download File View File

AVERAGE NMR SOLUTION STRUCTURE OF THE TRP-RICH PEPTIDE OF HIV GP41 BOUND TO DPC MICELLES

Schibli, D.J., Montelaro, R.C., Vogel, H.J.

(2001) Biochemistry 40: 9570-9578

Released	2001-10-17
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate HXB3)
Macromolecule	TRANSMEMBRANE GLYCOPROTEIN (GP41) (protein)

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1JC8 \| pdb_00001jc8	Download File View File

Solution structure of lactam analogue (DDap) of gp41 600-612 loop of HIV

Phan Chan Du, A., Limal, D., Semetey, V., Dali, H., Jolivet, M., Desgranges, C., Cung, M.T., Briand, J.P., Petit, M.C., Muller, S.

(2002) J Mol Biology 323: 503-521

Released	2003-07-01
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate BRVA)
Macromolecule	DDap: (ACE)IWGDSGKLI(DNP)TTA ANALOGUE OF HIV GP41 (protein)

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1JCP \| pdb_00001jcp	Download File View File

Solution structure of the lactam analogue EDap of HIV gp41 600-612 loop.

Phan Chan Du, A., Limal, D., Semetey, V., Dali, H., Jolivet, M., Desgranges, C., Cung, M.T., Briand, J.P., Petit, M.C., Muller, S.

(2002) J Mol Biology 323: 503-521

Released	2003-07-01
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate BRVA)
Macromolecule	Edap : ACE-Ile-Trp-Glu-Ser-Gly-Lys-Leu-Ile-Dap-Thr-Thr-Ala ANALOGUE OF HIV GP41 (protein)

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1JEK \| pdb_00001jek	Download File View File

Visna TM CORE STRUCTURE

Malashkevich, V.N., Singh, M., Kim, P.S.

(2001) Proc Natl Acad Sci U S A 98: 8502-8506

Released	2001-07-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Maedi visna virus (strain KV1772)
Macromolecule	ENV POLYPROTEIN (protein)

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1K5M \| pdb_00001k5m	Download File View File

Crystal Structure of a Human Rhinovirus Type 14:Human Immunodeficiency Virus Type 1 V3 Loop Chimeric Virus MN-III-2

Ding, J., Smith, A.D., Geisler, S.C., Ma, X., Arnold, G.F., Arnold, E.

(2002) Structure 10: 999-1011

Released	2002-07-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	HIV-1 M:B_MN rhinovirus B14
Macromolecule	CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120 (protein) COAT PROTEIN VP1 (P1D) (protein) COAT PROTEIN VP3 (P1C) (protein) COAT PROTEIN VP4 (P1A) (protein)
Unique Ligands	SPH

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1LB0 \| pdb_00001lb0	Download File View File

NMR Structure of HIV-1 gp41 659-671 13-mer peptide

Biron, Z.

(2002) Biochemistry 41: 12687-12696

Released	2002-12-04
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate WMJ1)
Macromolecule	GP41 (protein)

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1LCS \| pdb_00001lcs	Download File View File

RECEPTOR-BINDING DOMAIN FROM SUBGROUP B FELINE LEUKEMIA VIRUS

Barnett, A.L., Wensel, D.L., Li, W., Fass, D., Cunningham, J.M.

(2003) J Virol 77: 2717-2729

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Feline leukemia virus strain B/lambda-B1
Macromolecule	FELINE LEUKEMIA VIRUS RECEPTOR-BINDING DOMAIN (protein)
Unique Ligands	TOE
Unique branched monosaccharides	BMA, MAN, NAG, NDG

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1LCX \| pdb_00001lcx	Download File View File

NMR structure of HIV-1 gp41 659-671 13mer peptide

Biron, Z., Khare, S., Samson, A.O., Hayek, Y., Naider, F., Anglister, J.

(2002) Biochemistry 41: 12687-12696

Released	2002-12-04
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate WMJ1)
Macromolecule	GP41 (protein)

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1MEQ \| pdb_00001meq	Download File View File

HIV gp120 C5

Caffrey, M., Jacobs, A., Guilhaudis, L.

(2002) Eur J Biochem 269: 4860-4867

Released	2002-12-11
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate SF33)
Macromolecule	Exterior Membrane Glycoprotein (GP120) (protein)

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1MZI \| pdb_00001mzi	Download File View File

Solution ensemble structures of HIV-1 gp41 2F5 mAb epitope

Barbato, G., Bianchi, E., Ingallinella, P., Hurni, W.H., Miller, M.D., Ciliberto, G., Cortese, R., Bazzo, R., Shiver, J.W., Pessi, A.

(2003) J Mol Biology 330: 1101-1115

Released	2003-09-02
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)
Macromolecule	2F5 epitope of HIV-1 gp41 fusion protein (protein)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AI1 | pdb_00001ai1

1B03 | pdb_00001b03

1CE4 | pdb_00001ce4

1ENV | pdb_00001env

1ERF | pdb_00001erf

1FAV | pdb_00001fav

1GC1 | pdb_00001gc1

1GGI | pdb_00001ggi

1IM7 | pdb_00001im7

1J8N | pdb_00001j8n

1J8Z | pdb_00001j8z

1J9V | pdb_00001j9v

1JAA | pdb_00001jaa

1JAR | pdb_00001jar

1JAU | pdb_00001jau

1JAV | pdb_00001jav

1JC8 | pdb_00001jc8

1JCP | pdb_00001jcp

1JEK | pdb_00001jek

1K5M | pdb_00001k5m

1LB0 | pdb_00001lb0

1LCS | pdb_00001lcs

1LCX | pdb_00001lcx

1MEQ | pdb_00001meq

1MZI | pdb_00001mzi