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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "GRD8"

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Search Summary

This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Human immunodeficiency virus 1 (5)
	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE) (2)
	HIV-1 M:B_HXB2R (1)

Taxonomy

Riboviria (8)

Experimental Method

	X-RAY DIFFRACTION (5)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

Protein (8)

Refinement Resolution (Å)

	2.0 - 2.5 (6)
	3.0 - 3.5 (2)

Release Date

2020 - 2024 (8)

Symmetry Type

Cyclic (8)

SCOP Classification

All alpha proteins (2)

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1 to 8 of 8 Structures

Page 1 of 1

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6V2F \| pdb_00006v2f	Download File View File

Crystal structure of the HIV capsid hexamer bound to the small molecule long-acting inhibitor, GS-6207

Appleby, T.C., Link, J.O., Yant, S.R., Villasenor, A.G., Somoza, J.R., Hu, E.Y., Schroeder, S.D., Cihlar, T.

(2020) Nature 584: 614-618

Released	2020-07-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 capsid (protein)
Unique Ligands	QNG

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6VKV \| pdb_00006vkv	Download File View File

Co-crystal structure of GS-6207 bound to HIV-1 capsid hexamer

Bester, S.M., Kvaratskhelia, M.

(2020) Science 370: 360-364

Released	2020-10-21
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Capsid protein p24 (protein)
Unique Ligands	CL, IOD, QNG

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7RHN \| pdb_00007rhn	Download File View File

Co-crystal structure of Q67H mutant of disulfide stabilized HIV-1 CA hexamer and lenacapavir

Bester, S.M., Kvaratskhelia, M.

(2022) mBio 13: e0180422-e0180422

Released	2022-07-27
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Capsid protein p24 (protein)
Unique Ligands	CL, IOD, QNG

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7RJ2 \| pdb_00007rj2	Download File View File

Co-crystal structure of lenacapavir bound to Q67H/N74D mutant of disulfide stabilized HIV-1 CA hexamer

Bester, S.M., Kvaratskhelia, M.

(2022) mBio 13: e0180422-e0180422

Released	2022-07-27
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Capsid protein p24 (protein)
Unique Ligands	CL, IOD, QNG

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7RJ4 \| pdb_00007rj4	Download File View File

Co-crystal structure of lenacapavir bound to N74D mutant of disulfide stabilized HIV-1 CA hexamer

Bester, S.M., Kvaratskhelia, M.

(2022) mBio 13: e0180422-e0180422

Released	2022-07-27
Method	X-RAY DIFFRACTION 3.32 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	CAPSID PROTEIN P24 (protein)
Unique Ligands	CL, IOD, QNG

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9D6C \| pdb_00009d6c	Download File View File

Gag CA-SP1 immature lattice bound with Lenacapavir and Bevirimat from enveloped virus like particles

Wu, C., Meuser, M.E., Xiong, Y.

(2024) bioRxiv

Released	2024-10-30
Method	ELECTRON MICROSCOPY 2.1 Å
Organisms	HIV-1 M:B_HXB2R
Macromolecule	Gag (protein)
Unique Ligands	2I4, IHP, QNG

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9D6D \| pdb_00009d6d	Download File View File

Gag CA-SP1 immature lattice bound with Lenacapavir from enveloped virus like particles

Wu, C., Meuser, M.E., Xiong, Y.

(2024) bioRxiv

Released	2024-10-30
Method	ELECTRON MICROSCOPY 2.18 Å
Organisms	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Gag polyprotein (protein)
Unique Ligands	IHP, QNG

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9DWD \| pdb_00009dwd	Download File View File

Gag CA-SP1 immature lattice bound with Lenacapavir from enveloped virus like particles (T8I)

Wu, C., Meuser, M.E., Xiong, Y.

(2024) bioRxiv

Released	2024-10-30
Method	ELECTRON MICROSCOPY 3.13 Å
Organisms	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	Gag (protein)
Unique Ligands	IHP, QNG

1 to 8 of 8 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

6V2F | pdb_00006v2f

Crystal structure of the HIV capsid hexamer bound to the small molecule long-acting inhibitor, GS-6207

6VKV | pdb_00006vkv

Co-crystal structure of GS-6207 bound to HIV-1 capsid hexamer

7RHN | pdb_00007rhn

Co-crystal structure of Q67H mutant of disulfide stabilized HIV-1 CA hexamer and lenacapavir

7RJ2 | pdb_00007rj2

Co-crystal structure of lenacapavir bound to Q67H/N74D mutant of disulfide stabilized HIV-1 CA hexamer

7RJ4 | pdb_00007rj4

Co-crystal structure of lenacapavir bound to N74D mutant of disulfide stabilized HIV-1 CA hexamer

9D6C | pdb_00009d6c

Gag CA-SP1 immature lattice bound with Lenacapavir and Bevirimat from enveloped virus like particles

9D6D | pdb_00009d6d

Gag CA-SP1 immature lattice bound with Lenacapavir from enveloped virus like particles

9DWD | pdb_00009dwd

Gag CA-SP1 immature lattice bound with Lenacapavir from enveloped virus like particles (T8I)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

6V2F | pdb_00006v2f

6VKV | pdb_00006vkv

7RHN | pdb_00007rhn

7RJ2 | pdb_00007rj2

7RJ4 | pdb_00007rj4

9D6C | pdb_00009d6c

9D6D | pdb_00009d6d

9DWD | pdb_00009dwd