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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "JMJ"

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Homo sapiens (11)
	Xenopus laevis (2)
	Mus musculus (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (12)
	other sequences (1)

Experimental Method

	ELECTRON MICROSCOPY (11)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (12)
	DNA (3)
	RNA (1)

Refinement Resolution (Å)

	3.0 - 3.5 (4)
	3.5 - 4.0 (6)
	4.0 - 4.5 (1)

Release Date

	2005 - 2009 (1)
	2015 - 2019 (2)
	2020 - 2024 (4)
	2025 - 2029 (5)

Enzyme Classification Name

Transferases (11)

Symmetry Type

	Asymmetric (11)
	Cyclic (1)

AllSelected

1 to 12 of 12 Structures

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Explore in 3D

2RQ5 \| pdb_00002rq5	Download File View File

Solution structure of the AT-rich interaction domain (ARID) of Jumonji/JARID2

Kusunoki, H., Kohno, T.

(2009) Proteins 76: 1023-1028

Released	2009-06-09
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Protein Jumonji (protein)

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6C23 \| pdb_00006c23	Download File View File

Cryo-EM structure of PRC2 bound to cofactors AEBP2 and JARID2 in the Compact Active State

Kasinath, V., Faini, M., Poepsel, S., Reif, D., Feng, A., Stjepanovic, G., Aebersold, R., Nogales, E.

(2018) Science 359: 940-944

Released	2018-01-24
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 9

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6C24 \| pdb_00006c24	Download File View File

Cryo-EM structure of PRC2 bound to cofactors AEBP2 and JARID2 in the Extended Active State

Kasinath, V., Faini, M., Poepsel, S., Reif, D., Feng, A., Stjepanovic, G., Aebersold, R., Nogales, E.

(2018) Science 359: 940-944

Released	2018-01-24
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 9

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6WKR \| pdb_00006wkr	Download File View File

PRC2-AEBP2-JARID2 bound to H2AK119ub1 nucleosome

Kasinath, V., Nogales, E., Beck, C., Sauer, P., Poepsel, S., Kosmatka, J., Faini, M., Toso, D., Aebersold, R.

(2021) Science 371:

Released	2021-02-03
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	Unique protein chains: 11 Unique nucleic acid chains: 1
Unique Ligands	MG, SAH, ZN

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7KSO \| pdb_00007kso	Download File View File

Cryo-EM structure of PRC2:EZH1-AEBP2-JARID2

Grau, D.J., Armache, K.J.

(2021) Nat Commun 12: 714-714

Released	2021-02-03
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	ZN

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8TB9 \| pdb_00008tb9	Download File View File

PRC2-J119-450 monomer bound to H1-nucleosome

Sauer, P.V., Cookis, T., Pavlenko, E., Nogales, E., Poepsel, S.

(2024) Mol Cell 84: 3885-3898.e8

Released	2024-09-25
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 11 Unique nucleic acid chains: 2
Unique Ligands	SAH

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8VMI \| pdb_00008vmi	Download File View File

PRC2_AJ119-450 bound to H3K4me3

Cookis, T., Nogales, E.

(2025) Nat Struct Mol Biol 32: 393-404

Released	2025-01-15
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 8
Unique Ligands	ZN

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8VML \| pdb_00008vml	Download File View File

PRC2_AJ1-450 bound to H3K4me3

Cookis, T., Nogales, E.

(2025) Nat Struct Mol Biol 32: 393-404

Released	2025-01-15
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 7

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8VNV \| pdb_00008vnv	Download File View File

PRC2_AJ1-450 bound to H3K36me3 with histone H3 tail engaged

Cookis, T., Nogales, E.

(2025) Nat Struct Mol Biol 32: 393-404

Released	2025-01-22
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 7 Unique nucleic acid chains: 2
Unique Ligands	SAH

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8VNZ \| pdb_00008vnz	Download File View File

PRC2_AJ1-450 bound to H3K36me3-modified nucleosome with histone H3 tail disengaged

Cookis, T., Nogales, E.

(2025) Nat Struct Mol Biol 32: 393-404

Released	2025-01-15
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	SAH

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9C8U \| pdb_00009c8u	Download File View File

Human PRC2 - RvLEAM (short) (1:6 molar ratio), cross-linked 10 min

Abe, K.M., Li, G., He, Q., Grant, T., Lim, C.

(2024) Nat Commun 15: 7705-7705

Released	2024-09-04
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	ZN

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9DCH \| pdb_00009dch	Download File View File

Single-stranded RNA-mediated PRC2 dimer

Song, J.S., Kasinath, V.K.

(2024) bioRxiv

Released	2025-03-12
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 1
Unique Ligands	ZN

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2RQ5 | pdb_00002rq5

Solution structure of the AT-rich interaction domain (ARID) of Jumonji/JARID2

6C23 | pdb_00006c23

Cryo-EM structure of PRC2 bound to cofactors AEBP2 and JARID2 in the Compact Active State

6C24 | pdb_00006c24

Cryo-EM structure of PRC2 bound to cofactors AEBP2 and JARID2 in the Extended Active State

6WKR | pdb_00006wkr

PRC2-AEBP2-JARID2 bound to H2AK119ub1 nucleosome

7KSO | pdb_00007kso

Cryo-EM structure of PRC2:EZH1-AEBP2-JARID2

8TB9 | pdb_00008tb9

PRC2-J119-450 monomer bound to H1-nucleosome

8VMI | pdb_00008vmi

PRC2_AJ119-450 bound to H3K4me3

8VML | pdb_00008vml

PRC2_AJ1-450 bound to H3K4me3

8VNV | pdb_00008vnv

PRC2_AJ1-450 bound to H3K36me3 with histone H3 tail engaged

8VNZ | pdb_00008vnz

PRC2_AJ1-450 bound to H3K36me3-modified nucleosome with histone H3 tail disengaged

9C8U | pdb_00009c8u

Human PRC2 - RvLEAM (short) (1:6 molar ratio), cross-linked 10 min

9DCH | pdb_00009dch

Single-stranded RNA-mediated PRC2 dimer

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

2RQ5 | pdb_00002rq5

6C23 | pdb_00006c23

6C24 | pdb_00006c24

6WKR | pdb_00006wkr

7KSO | pdb_00007kso

8TB9 | pdb_00008tb9

8VMI | pdb_00008vmi

8VML | pdb_00008vml

8VNV | pdb_00008vnv

8VNZ | pdb_00008vnz

9C8U | pdb_00009c8u

9DCH | pdb_00009dch