RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Gene Name = "LCN2"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 32 Structures.

Refinements

Structure Determination Methodology

experimental (32)

Scientific Name of Source Organism

	Mycobacterium tuberculosis H37Rv (17)
	synthetic construct (9)
	Escherichia fergusonii ATCC 35469 (4)
	Homo sapiens (3)
	Pectobacterium atrosepticum (3)
	Salmonella enterica subsp. enterica serovar Typhimurium str. D23580 (2)
	Bacillus thuringiensis (1)
	Escherichia phage T7 (1)
	Mycobacterium tuberculosis CDC1551 (1)
	Pectobacterium phage ZF40 (1)

More...

Taxonomy

	Bacteria (28)
	other sequences (9)
	Eukaryota (3)
	Duplodnaviria (2)

Experimental Method

X-RAY DIFFRACTION (32)

Polymer Entity Type

	Protein (32)
	DNA (9)
	RNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (5)
	2.0 - 2.5 (9)
	2.5 - 3.0 (11)
	3.0 - 3.5 (2)
	3.5 - 4.0 (2)

Release Date

	2010 - 2014 (4)
	2015 - 2019 (9)
	2020 - 2024 (19)

Enzyme Classification Name

	Isomerases (12)
	Hydrolases (4)
	Transferases (2)

Symmetry Type

	Asymmetric (12)
	Cyclic (20)

AllSelected

1 to 25 of 32 Structures

Page 1 of 2

Sort by

Explore in 3D

2XD0 \| pdb_00002xd0	Download File View File

A processed non-coding RNA regulates a bacterial antiviral system

Blower, T.R., Pei, X.Y., Short, F.L., Fineran, P.C., Humphreys, D.P., Luisi, B.F., Salmond, G.P.C.

(2011) Nat Struct Mol Biol 18: 185-190

Released	2011-01-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Pectobacterium atrosepticum
Macromolecule	TOXN (protein) TOXI (nucleic acid)

Explore in 3D

2XDB \| pdb_00002xdb	Download File View File

A processed non-coding RNA regulates a bacterial antiviral system

Blower, T.R., Pei, X.Y., Short, F.L., Fineran, P.C., Humphreys, D.P., Luisi, B.F., Salmond, G.P.C.

(2011) Nat Struct Mol Biol 18: 185

Released	2011-01-12
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Pectobacterium atrosepticum
Macromolecule	TOXN (protein) TOXI (nucleic acid)
Unique Ligands	CO, SO4

Explore in 3D

2XDD \| pdb_00002xdd	Download File View File

A processed non-coding RNA regulates a bacterial antiviral system

Blower, T.R., Pei, X.Y., Short, F.L., Fineran, P.C., Humphreys, D.P., Luisi, B.F., Salmond, G.P.C.

(2009) Proc Natl Acad Sci U S A 106: 894

Released	2011-01-12
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Pectobacterium atrosepticum
Macromolecule	TOXN (protein) TOXI (nucleic acid)
Unique Ligands	ZN

Explore in 3D

4ATO \| pdb_00004ato	Download File View File

New insights into the mechanism of bacterial Type III toxin-antitoxin systems: selective toxin inhibition by a non-coding RNA pseudoknot

Short, F.L., Pei, X.Y., Blower, T.R., Ong, S.L., Luisi, B.F., Salmond, G.P.C.

(2013) Proc Natl Acad Sci U S A 110: E241

Released	2012-12-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus thuringiensis
Macromolecule	TOXN (protein) TOXI (nucleic acid)
Unique Ligands	MPD

Explore in 3D

5BS8 \| pdb_00005bs8	Download File View File

Crystal structure of a topoisomerase II complex

Blower, T.R., Williamson, B.H., Kerns, R.J., Berger, J.M.

(2016) Proc Natl Acad Sci U S A 113: 1706-1713

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.399 Å
Organisms	Mycobacterium tuberculosis H37Rv synthetic construct
Macromolecule	DNA gyrase subunit A (protein) DNA gyrase subunit B (protein) DNA substrate 24-mer GGTCATGAATGACTATGCACGTAA (nucleic acid) DNA substrate 24-mer TTACGTGCATAGTCATTCATGACC (nucleic acid)
Unique Ligands	MFX, MG

Explore in 3D

5BTA \| pdb_00005bta	Download File View File

Crystal structure of a topoisomerase II complex

Blower, T.R., Williamson, B.H., Kerns, R.J., Berger, J.M.

(2016) Proc Natl Acad Sci U S A 113: 1706-1713

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Mycobacterium tuberculosis H37Rv synthetic construct
Macromolecule	DNA gyrase subunit A (protein) DNA gyrase subunit B (protein) DNA substrate 24-mer GGTCATGAATGACTATGCACGTAA (nucleic acid) DNA substrate 24-mer TTACGTGCATAGTCATTCATGACC (nucleic acid)
Unique Ligands	MFX, MG

Explore in 3D

5BTC \| pdb_00005btc	Download File View File

Crystal structure of a topoisomerase II complex

Blower, T.R., Williamson, B.H., Kerns, R.J., Berger, J.M.

(2016) Proc Natl Acad Sci U S A 113: 1706-1713

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Mycobacterium tuberculosis H37Rv synthetic construct
Macromolecule	DNA gyrase subunit A (protein) DNA gyrase subunit B (protein) DNA substrate 24-mer GGTCATGAATGACTATGCACGTAA (nucleic acid) DNA substrate 24-mer TTACGTGCATAGTCATTCATGACC (nucleic acid)
Unique Ligands	CPF, MG

Explore in 3D

5BTD \| pdb_00005btd	Download File View File

Crystal structure of a topoisomerase II complex

Blower, T.R., Williamson, B.H., Kerns, R.J., Berger, J.M.

(2016) Proc Natl Acad Sci U S A 113: 1706-1713

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.497 Å
Organisms	Mycobacterium tuberculosis H37Rv synthetic construct
Macromolecule	DNA gyrase subunit A (protein) DNA gyrase subunit B (protein) DNA substrate 24-mer GGTCATGAATGACTATGCACGTAA (nucleic acid) DNA substrate 24-mer TTACGTGCATAGTCATTCATGACC (nucleic acid)
Unique Ligands	GFN, MG

Explore in 3D

5BTF \| pdb_00005btf	Download File View File

Crystal structure of a topoisomerase II complex

Blower, T.R., Williamson, B.H., Kerns, R.J., Berger, J.M.

(2016) Proc Natl Acad Sci U S A 113: 1706-1713

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Mycobacterium tuberculosis H37Rv synthetic construct
Macromolecule	DNA gyrase subunit A (protein) DNA gyrase subunit B (protein) DNA substrate 24-mer GGTCATGAATGACTATGCACGTAA (nucleic acid) DNA substrate 24-mer TTACGTGCATAGTCATTCATGACC (nucleic acid)
Unique Ligands	GFN, MG

Explore in 3D

5BTG \| pdb_00005btg	Download File View File

Crystal structure of a topoisomerase II complex

Blower, T.R., Williamson, B.H., Kerns, R.J., Berger, J.M.

(2016) Proc Natl Acad Sci U S A 113: 1706-1713

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mycobacterium tuberculosis H37Rv synthetic construct
Macromolecule	DNA gyrase subunit A (protein) DNA gyrase subunit B (protein) DNA substrate 24-mer GGTCATGAATGACTATGCACGTAA (nucleic acid) DNA substrate 24-mer TTACGTGCATAGTCATTCATGACC (nucleic acid)
Unique Ligands	LFX, MG

Explore in 3D

5BTI \| pdb_00005bti	Download File View File

Crystal structure of a topoisomerase II complex

Blower, T.R., Williamson, B.H., Kerns, R.J., Berger, J.M.

(2016) Proc Natl Acad Sci U S A 113: 1706-1713

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.501 Å
Organisms	Mycobacterium tuberculosis H37Rv synthetic construct
Macromolecule	DNA gyrase subunit A (protein) DNA gyrase subunit B (protein) DNA substrate 24-mer GGTCATGAATGACTATGCACGTAA (nucleic acid) DNA substrate 24-mer TTACGTGCATAGTCATTCATGACC (nucleic acid)
Unique Ligands	LFX, MG

Explore in 3D

5BTL \| pdb_00005btl	Download File View File

Crystal structure of a topoisomerase II complex

Blower, T.R., Williamson, B.H., Kerns, R.J., Berger, J.M.

(2016) Proc Natl Acad Sci U S A 113: 1706-1713

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mycobacterium tuberculosis CDC1551 Mycobacterium tuberculosis H37Rv synthetic construct
Macromolecule	DNA gyrase subunit A (protein) DNA gyrase subunit B (protein) DNA substrate 24-mer GGTCATGAATGACTATGCACGTAA (nucleic acid) DNA substrate 24-mer TTACGTGCATAGTCATTCATGACC (nucleic acid)
Unique Ligands	8MX, MG

Explore in 3D

5BTN \| pdb_00005btn	Download File View File

Crystal structure of a topoisomerase II complex

Blower, T.R., Williamson, B.H., Kerns, R.J., Berger, J.M.

(2016) Proc Natl Acad Sci U S A 113: 1706-1713

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mycobacterium tuberculosis H37Rv synthetic construct
Macromolecule	DNA gyrase subunit A (protein) DNA gyrase subunit B (protein) DNA substrate 24-mer GGTCATGAATGACTATGCACGTAA (nucleic acid) DNA substrate 24-mer TTACGTGCATAGTCATTCATGACC (nucleic acid)
Unique Ligands	8MX, MG

Explore in 3D

6Y56 \| pdb_00006y56	Download File View File

MenT4, nucleotidyltransferase toxin Rv2826c from Mycobacterium tuberculosis H37Rv

Usher, B., Blower, T.R.

(2020) Sci Adv 6: eabb6651-eabb6651

Released	2020-09-16
Method	X-RAY DIFFRACTION 1.23 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Uncharacterized protein (protein)

Explore in 3D

6Y5U \| pdb_00006y5u	Download File View File

MenT3 (aka TglT), nucleotidyltransferase toxin Rv1045 from Mycobacterium tuberculosis

Blower, T.R., Usher, B.

(2020) Sci Adv 6: eabb6651-eabb6651

Released	2020-09-16
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Rv1045 (protein)

Explore in 3D

6Y8Q \| pdb_00006y8q	Download File View File

AbiEi antitoxin from Streptococcus agalactiae

Blower, T.R., Beck, I.N.

(2020) Biochem J 477: 2401-2419

Released	2020-12-16
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Streptococcus agalactiae
Macromolecule	Abortive phage infection protein (protein)
Unique Ligands	B3P, TRS

Explore in 3D

7B5J \| pdb_00007b5j	Download File View File

Anti-CRISPR associated (Aca) protein, Aca2

Usher, B., Birkholz, N., Fineran, P.C., Blower, T.R.

(2021) J Struct Biol 213: 107752-107752

Released	2021-06-23
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Pectobacterium phage ZF40
Macromolecule	Anti-CRISPR associated (Aca) protein, Aca2 (protein)
Unique Ligands	GOL

Explore in 3D

7P9K \| pdb_00007p9k	Download File View File

BrxU, GmrSD-family Type IV restriction enzyme

Picton, D.M., Luyten, Y., Morgan, R.D., Nelson, A., Smith, D.L., Dryden, D.T.F., Hinton, J.C.D., Blower, T.R.

(2021) Nucleic Acids Res 49: 11257-11273

Released	2021-12-08
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Escherichia fergusonii ATCC 35469
Macromolecule	DUF262 domain-containing protein (protein)
Unique Ligands	CL, GOL, SO4

Explore in 3D

7P9M \| pdb_00007p9m	Download File View File

BrxU, GmrSD-family Type IV restriction enzyme

Picton, D.M., Luyten, Y., Morgan, R.D., Nelson, A., Smith, D.L., Dryden, D.T.F., Hinton, J.C.D., Blower, T.R.

(2021) Nucleic Acids Res 49: 11257-11273

Released	2021-12-08
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Escherichia fergusonii ATCC 35469
Macromolecule	DUF262 domain-containing protein (protein)
Unique Ligands	CL, SO4

Explore in 3D

7QFN \| pdb_00007qfn	Download File View File

Human Topoisomerase II Beta ATPase ADP

Ling, E.M., Basle, A., Cowell, I.G., Blower, T.R., Austin, C.A.

(2022) Structure 30: 1129-1145.e3

Released	2022-05-25
Method	X-RAY DIFFRACTION 2.621 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase 2-beta (protein)
Unique Ligands	ADP, MG, SO4

Explore in 3D

7QFO \| pdb_00007qfo	Download File View File

Human Topoisomerase II Beta ATPase AMPPNP

Ling, E.M., Basle, A., Cowell, I.G., Blower, T.R., Austin, C.A.

(2022) Structure 30: 1129-1145.e3

Released	2022-05-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	DNA topoisomerase 2-beta (protein)
Unique Ligands	ALA, ANP, MG

Explore in 3D

7QFZ \| pdb_00007qfz	Download File View File

BrxR, a WYL-domain containing transcriptional regulator

Picton, D.M., Blower, T.R.

(2022) Nucleic Acids Res 50: 5191-5207

Released	2022-05-18
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Escherichia fergusonii ATCC 35469
Macromolecule	WYL domain-containing protein (protein)
Unique Ligands	SO4