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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "OGG1"

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Search Summary

This query matches 49 Structures.

Refinements

Structure Determination Methodology

experimental (49)

Scientific Name of Source Organism

	Homo sapiens (33)
	Mus musculus (16)
	synthetic construct (6)
	Xenopus laevis (1)

Taxonomy

	Eukaryota (49)
	other sequences (6)

Experimental Method

	X-RAY DIFFRACTION (44)
	ELECTRON MICROSCOPY (5)

Polymer Entity Type

	Protein (49)
	DNA (30)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (29)
	2.5 - 3.0 (12)
	3.0 - 3.5 (4)
	3.5 - 4.0 (2)

Release Date

	2000 - 2004 (9)
	2005 - 2009 (12)
	2010 - 2014 (2)
	2015 - 2019 (3)
	2020 - 2024 (23)

Enzyme Classification Name

	Hydrolases (49)
	Lyases (49)

Symmetry Type

	Asymmetric (47)
	Cyclic (2)

SCOP Classification

	All alpha proteins (24)
	Alpha and beta proteins (a+b) (24)
	Artifacts (23)

AllSelected

1 to 25 of 49 Structures

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1HU0 \| pdb_00001hu0	Download File View File

CRYSTAL STRUCTURE OF AN HOGG1-DNA BOROHYDRIDE TRAPPED INTERMEDIATE COMPLEX

Fromme, J.C., Bruner, S.D., Yang, W., Karplus, M., Verdine, G.L.

(2003) Nat Struct Biol 10: 204-211

Released	2003-02-25
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	8-OXOGUANINE DNA GLYCOSYLASE 1 (protein) 5'-D(GPCPGPTPCPCPAP(PED)PGPTPCPTPAPCPC)-3' (nucleic acid) 5'-D(GPGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid)
Unique Ligands	CA, OXG

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1KO9 \| pdb_00001ko9	Download File View File

Native Structure of the Human 8-oxoguanine DNA Glycosylase hOGG1

Bjoras, M., Seeberg, E., Luna, L., Pearl, L.H., Barrett, T.E.

(2002) J Mol Biology 317: 171-177

Released	2002-01-09
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	8-oxoguanine DNA glycosylase (protein)
Unique Ligands	SO4

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1LWV \| pdb_00001lwv	Download File View File

Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-aminoguanine

Fromme, J.C., Bruner, S.D., Yang, W., Karplus, M., Verdine, G.L.

(2003) Nat Struct Biol 10: 204-211

Released	2003-02-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	8-OXOGUANINE DNA GLYCOSYLASE (protein) 5'-D(GPCPGPTPCPCPAP(PED)PGPTPCPTPAPCPC)-3' (nucleic acid) 5'-D(GPGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid)
Unique Ligands	ANG, CA

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1LWW \| pdb_00001lww	Download File View File

Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-bromoguanine

Fromme, J.C., Bruner, S.D., Yang, W., Karplus, M., Verdine, G.L.

(2003) Nat Struct Biol 10: 204-211

Released	2003-02-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	8-OXOGUANINE DNA GLYCOSYLASE (protein) 5'-D(GPCPGPTPCPCPAP(PED)PGPTPCPTPAPCPC)-3' (nucleic acid) 5'-D(GPGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid)
Unique Ligands	BRG, CA

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1LWY \| pdb_00001lwy	Download File View File

hOgg1 Borohydride-Trapped Intermediate without 8-oxoguanine

Fromme, J.C., Bruner, S.D., Yang, W., Karplus, M., Verdine, G.L.

(2003) Nat Struct Biol 10: 204-211

Released	2003-02-25
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	8-OXOGUANINE DNA GLYCOSYLASE (protein) 5'-D(GPCPGPTPCPCPAP(PED)PGPTPCPTPAPCPC)-3' (nucleic acid) 5'-D(GPGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid)

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1M3H \| pdb_00001m3h	Download File View File

Crystal Structure of Hogg1 D268E Mutant with Product Oligonucleotide

Chung, S.J., Verdine, G.L.

(2004) Chem Biol 11: 1643-1649

Released	2004-04-20
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	8-Oxoguanine DNA Glycosylase (protein) 5'-D(PGPCPGPTPCPCPAP(DDX))-3' (nucleic acid) 5'-D(PGPGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid) 5'-D(PGPTPCPTPAPCPC)-3' (nucleic acid)
Unique Ligands	CA

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1M3Q \| pdb_00001m3q	Download File View File

Crystal Structure of hogg1 D268E Mutant with Base-Excised DNA and 8-aminoguanine

Chung, S.J., Verdine, G.L.

(2004) Chem Biol 11: 1643-1649

Released	2004-02-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	8-oxoguanine DNA glycosylase (protein) 5'-D(GPCPGPTPCPCPAP(DRZ)PGPTPCPTPAPCPC)-3' (nucleic acid) 5'-D(GPGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid)
Unique Ligands	ANG, CA

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1N3A \| pdb_00001n3a	Download File View File

Structural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylase

Norman, D.P., Chung, S.J., Verdine, G.L.

(2003) Biochemistry 42: 1564-1572

Released	2003-03-04
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	N-glycosylase/DNA lyase (protein) DNA complement strand (nucleic acid) DNA inhibitor strand (nucleic acid)
Unique Ligands	CA

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1N3C \| pdb_00001n3c	Download File View File

Structural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylase

Norman, D.P., Chung, S.J., Verdine, G.L.

(2003) Biochemistry 42: 1564-1572

Released	2003-03-04
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	N-glycosylase/DNA lyase (protein) 8-oxoG-containing DNA (nucleic acid) DNA complement strand (nucleic acid)
Unique Ligands	CA

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1YQK \| pdb_00001yqk	Download File View File

Human 8-oxoguanine glycosylase crosslinked with guanine containing DNA

Banerjee, A., Yang, W., Karplus, M., Verdine, G.L.

(2005) Nature 434: 612-618

Released	2005-04-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	N-glycosylase/DNA lyase (protein) 5'-D(GPGPTPAPGPAPCPCPTPGPG)-3' (nucleic acid) 5'-D(PCPAPGPGPTPCPTPAPC)-3' (nucleic acid)
Unique Ligands	CA, GOL

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1YQL \| pdb_00001yql	Download File View File

Catalytically inactive hOGG1 crosslinked with 7-deaza-8-azaguanine containing DNA

Banerjee, A., Yang, W., Karplus, M., Verdine, G.L.

(2005) Nature 434: 612-618

Released	2005-04-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	N-glycosylase/DNA lyase (protein) 5'-D(PGPGPTPAPGPAPCPCPTPGPGPAPC)-3' (nucleic acid) 5'-D(PGPTPCPCPAP(PPW)PGPTPCPTPAP*C)-3' (nucleic acid)
Unique Ligands	CA

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1YQM \| pdb_00001yqm	Download File View File

Catalytically inactive human 8-oxoguanine glycosylase crosslinked to 7-deazaguanine containing DNA

Banerjee, A., Yang, W., Karplus, M., Verdine, G.L.

(2005) Nature 434: 612-618

Released	2005-04-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	N-glycosylase/DNA lyase (protein) 5'-D(PGPGPTPAPGPAPCPCPTPGPGPAPC)-3' (nucleic acid) 5'-D(PGPTPCPCPAP(7GU)PGPTPCPTPAP*C)-3' (nucleic acid)
Unique Ligands	CA

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1YQR \| pdb_00001yqr	Download File View File

Catalytically inactive human 8-oxoguanine glycosylase crosslinked to oxoG containing DNA

Banerjee, A., Yang, W., Karplus, M., Verdine, G.L.

(2005) Nature 434: 612-618

Released	2005-04-05
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Homo sapiens
Macromolecule	N-glycosylase/DNA lyase (protein) 5'-D(PCPGPTPCPCPAP(8OG)PGPTPCPTPAPCPC)-3' (nucleic acid) 5'-D(PGPGPTPAPGPAPCPCPTPGPGPAPCPG)-3' (nucleic acid)
Unique Ligands	CA

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2I5W \| pdb_00002i5w	Download File View File

Structure of hOGG1 crosslinked to DNA sampling a normal G adjacent to an oxoG

Banerjee, A., Verdine, G.L.

(2006) Proc Natl Acad Sci U S A 103: 15020-15025

Released	2006-10-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	N-glycosylase/DNA lyase (protein) 5'-D(GPGPTPAPGPAPCPCPTPGPGPA)-3' (nucleic acid) 5'-D(PCPCPAPGP(G42)PTPCPTPAPC)-3' (nucleic acid)
Unique Ligands	CA, GOL

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2NOB \| pdb_00002nob	Download File View File

Structure of catalytically inactive H270A human 8-oxoguanine glycosylase crosslinked to 8-oxoguanine DNA

Radom, C.T., Banerjee, A., Verdine, G.L.

(2007) J Biological Chem 282: 9182-9194

Released	2006-11-21
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	N-glycosylase/DNA lyase (protein) 5'-D(GCPGPTPCPCPAP(G42)PGPTPCPTPAPCPC)-3' (nucleic acid) 5'-D(TGPGPTPAPGPAPCPCPTPGPGPAPCPGP*C)-3' (nucleic acid)
Unique Ligands	CA

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2NOE \| pdb_00002noe	Download File View File

Structure of catalytically inactive G42A human 8-oxoguanine glycosylase complexed to 8-oxoguanine DNA

Radom, C.T., Banerjee, A., Verdine, G.L.

(2007) J Biological Chem 282: 9182-9194

Released	2006-11-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	N-glycosylase/DNA lyase (protein) 5'-D(GCPGPTPCPCPAP(G42)PGPTPCPTPAPCPC)-3' (nucleic acid) 5'-D(GGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid)
Unique Ligands	CA

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2NOF \| pdb_00002nof	Download File View File

Structure of Q315F human 8-oxoguanine glycosylase proximal crosslink to 8-oxoguanine DNA

Radom, C.T., Banerjee, A., Verdine, G.L.

(2007) J Biological Chem 282: 9182-9194

Released	2006-11-21
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	N-glycosylase/DNA lyase (protein) 5'-D(GPCPGPTPCCPAP(G42)PGPTPCPTPAPCPC)-3' (nucleic acid) 5'-D(GPGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid)
Unique Ligands	CA

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2NOH \| pdb_00002noh	Download File View File

Structure of catalytically inactive Q315A human 8-oxoguanine glycosylase complexed to 8-oxoguanine DNA

Radom, C.T., Banerjee, A., Verdine, G.L.

(2007) J Biological Chem 282: 9182-9194

Released	2006-11-21
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	N-glycosylase/DNA lyase (protein) 5'-D(GPCPGPTPCPCPAP(G42)PGPTPCPTPAPCPC)-3' (nucleic acid) 5'-D(GPGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid)
Unique Ligands	CA

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2NOI \| pdb_00002noi	Download File View File

Structure of G42A human 8-oxoguanine glycosylase crosslinked to undamaged G-containing DNA

Radom, C.T., Banerjee, A., Verdine, G.L.

(2007) J Biological Chem 282: 9182-9194

Released	2006-11-21
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	N-glycosylase/DNA lyase (protein) 5'-D(GPCPGPTPCCPAPGPGPTPCPTPAPCPC)-3' (nucleic acid) 5'-D(GPGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid)
Unique Ligands	CA

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2NOL \| pdb_00002nol	Download File View File

Structure of catalytically inactive human 8-oxoguanine glycosylase distal crosslink to oxoG DNA

Banerjee, A., Radom, C.T., Verdine, G.L.

(2007) J Biological Chem 282: 9182-9194

Released	2006-11-21
Method	X-RAY DIFFRACTION 2.57 Å
Organisms	Homo sapiens
Macromolecule	N-glycosylase/DNA lyase (protein) 5'-D(GPCPGPTPCPCPAP(G42)PGPTPCPTPAPCPC)-3' (nucleic acid) 5'-D(GPGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid)
Unique Ligands	CA

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2NOZ \| pdb_00002noz	Download File View File

Structure of Q315F human 8-oxoguanine glycosylase distal crosslink to 8-oxoguanine DNA

Radom, C.T., Banerjee, A., Verdine, G.L.

(2007) J Biological Chem 282: 9182-9194

Released	2006-11-21
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Homo sapiens
Macromolecule	N-glycosylase/DNA lyase (protein) 5'-D(GCPGPTPCPCPAP(G42)PGPTPCPTPAPCPC)-3' (nucleic acid) 5'-D(GPGTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid)
Unique Ligands	CA

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3IH7 \| pdb_00003ih7	Download File View File

Crystal structure of catalytically active human 8-oxoguanine glycosylase distally crosslinked to guanine-containing DNA

Verdine, G.L., Crenshaw, C.M., Oo, K.S., Kutchukian, P.S.

To be published

Released	2010-11-03
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	N-glycosylase/DNA lyase (protein) 5'-D(GPGPTPAPGPAPCPCPTPGPGPAPCPG)-3' (nucleic acid) 5'-D(APTPCPTPGPGPAPCPCPTPGPCPA)-3' (nucleic acid)

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3KTU \| pdb_00003ktu	Download File View File

Structure of human 8-oxoGuanine Glycosylase 1 bound to fluorninated oxoG-containing DNA

Verdine, G.L., Lee, S.M.

To be published

Released	2010-07-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	N-glycosylase/DNA lyase (protein) DNA (5'-D(GPGPTPAPGPAPCPCPTPGPGPAPC)-3') (nucleic acid) DNA (5'-D(GPTPCPCPAP(FDG)PGPTPCPTPAP*C)-3') (nucleic acid)
Unique Ligands	CA