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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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MyPDB

QUERY: Gene Name = "RAB11"

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

Homo sapiens (18)

Taxonomy

Eukaryota (18)

Experimental Method

X-RAY DIFFRACTION (18)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	2.0 - 2.5 (5)
	2.5 - 3.0 (2)
	3.0 - 3.5 (8)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (2)
	2015 - 2019 (14)
	2020 - 2024 (1)

Enzyme Classification Name

	Hydrolases (18)
	Transferases (9)

Symmetry Type

	Asymmetric (16)
	Cyclic (2)

SCOP Classification

	Alpha and beta proteins (a/b) (8)
	All alpha proteins (2)
	Artifacts (1)

AllSelected

1 to 18 of 18 Structures

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1YZK \| pdb_00001yzk	Download File View File

GppNHp bound Rab11 GTPase

Eathiraj, S., Pan, X., Ritacco, C., Lambright, D.G.

(2005) Nature 436: 415-419

Released	2005-07-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-11A (protein)
Unique Ligands	GNP, MG

Explore in 3D

4LWZ \| pdb_00004lwz	Download File View File

Crystal structure of Myo5b globular tail domain in complex with inactive Rab11a

Pylypenko, O., Attanda, W., Gauquelin, C., Houdusse, A.

(2013) Proc Natl Acad Sci U S A 110: 20443-20448

Released	2013-11-20
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-11A (protein) Unconventional myosin-Vb (protein)
Unique Ligands	GDP, MG

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4LX0 \| pdb_00004lx0	Download File View File

Crystal structure of Myo5b globular tail domain in complex with active Rab11a

Pylypenko, O., Attanda, W., Gauquelin, C., Houdusse, A.

(2013) Proc Natl Acad Sci U S A 110: 20443-20448

Released	2013-11-20
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-11A (protein) Unconventional myosin-Vb (protein)
Unique Ligands	BEF, GDP, GOL, MG

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4UJ4 \| pdb_00004uj4	Download File View File

Crystal structure of human Rab11-Rabin8-FIP3

Vetter, M., Lorentzen, E.

(2015) Nat Struct Mol Biol 22: 695-702

Released	2015-08-12
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Homo sapiens
Macromolecule	Rab-3A-interacting protein (protein) Rab11 family-interacting protein 3 (protein) Ras-related protein Rab-11A (protein)
Unique Ligands	GNP, MG

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5C46 \| pdb_00005c46	Download File View File

Crystal structure of an engineered construct of phosphatidylinositol 4 kinase III beta in complex with GTP gamma S loaded Rab11

Burke, J.E., Fowler, M.L.

(2016) Protein Sci 25: 826-839

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 4-kinase beta (protein) Ras-related protein Rab-11A (protein)
Unique Ligands	GSP, MG, SO4

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5C4G \| pdb_00005c4g	Download File View File

Crystal structure of an engineered construct of phosphatidylinositol 4 kinase III beta with the inhibitor BQR695 in complex with GDP loaded Rab11

Burke, J.E., Fowler, M.L.

(2016) Protein Sci 25: 826-839

Released	2016-01-20
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 4-kinase beta (protein) Ras-related protein Rab-11A (protein)
Unique Ligands	BQR, GDP, MG, SO4

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5EUQ \| pdb_00005euq	Download File View File

Crystal structure of an engineered construct of phosphatidylinositol 4 kinase III beta with a potent and selective inhibitor in complex with GDP loaded Rab11

Burke, J.E., Fowler, M.L.

(2016) J Med Chem 59: 1830-1839

Released	2016-02-24
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 4-kinase beta (protein) Ras-related protein Rab-11A (protein)
Unique Ligands	5S8, GDP, SO4

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5EZ5 \| pdb_00005ez5	Download File View File

Crystal structure of active Rab11A (S20V) in complex with GTP

Shin, Y.-C., Yoon, J.H., Park, H.H.

To be published

Released	2016-12-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-11A (protein)
Unique Ligands	GTP, MG

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5FBL \| pdb_00005fbl	Download File View File

PI4KB in complex with Rab11 and the MI356 Inhibitor

Chalupska, D., Mejdrova, I., Nencka, R., Boura, E.

To be published

Released	2016-12-28
Method	X-RAY DIFFRACTION 3.372 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 4-kinase beta,Phosphatidylinositol 4-kinase beta (protein) Ras-related protein Rab-11A (protein)
Unique Ligands	5W9, GSP

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5FBQ \| pdb_00005fbq	Download File View File

PI4KB in complex with Rab11 and the MI358 Inhibitor

Chalupska, D., Mejdrova, I., Nencka, R., Boura, E.

To be published

Released	2016-12-28
Method	X-RAY DIFFRACTION 3.789 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 4-kinase beta,Phosphatidylinositol 4-kinase beta (protein) Ras-related protein Rab-11A (protein)
Unique Ligands	5W6, GDP

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5FBR \| pdb_00005fbr	Download File View File

PI4KB in complex with Rab11 and the MI359 Inhibitor

Chalupska, D., Mejdrova, I., Nencka, R., Boura, E.

To be published

Released	2016-12-28
Method	X-RAY DIFFRACTION 3.28 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 4-kinase beta,Phosphatidylinositol 4-kinase beta (protein) Ras-related protein Rab-11A (protein)
Unique Ligands	5W7, GSP

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5FBV \| pdb_00005fbv	Download File View File

PI4KB in complex with Rab11 and the MI364 Inhibitor

Chalupska, D., Mejdrova, I., Nencka, R., Boura, E.

To be published

Released	2016-12-28
Method	X-RAY DIFFRACTION 3.285 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 4-kinase beta,Phosphatidylinositol 4-kinase beta (protein) Ras-related protein Rab-11A (protein)
Unique Ligands	5W3, GSP

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5FBW \| pdb_00005fbw	Download File View File

PI4KB in complex with Rab11 and the MI369 Inhibitor

Chalupska, D., Mejdrova, I., Nencka, R., Boura, E.

To be published

Released	2016-12-28
Method	X-RAY DIFFRACTION 3.487 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 4-kinase beta,Phosphatidylinositol 4-kinase beta (protein) Ras-related protein Rab-11A (protein)
Unique Ligands	5W8, GSP

Explore in 3D

5JCZ \| pdb_00005jcz	Download File View File

Rab11 bound to MyoVa-GTD

Pylypenko, O., Attanda, W., Gauquelin, C., Malherbes, G., Houdusse, A.

(2016) Elife 5:

Released	2016-09-28
Method	X-RAY DIFFRACTION 2.056 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-11A (protein) Unconventional myosin-Va (protein)
Unique Ligands	ACT, BEF, EDO, GDP, GOL, MG

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6DJL \| pdb_00006djl	Download File View File

Crystal structure of the Rab11 GEF SH3BP5 bound to nucleotide free Rab11A

Burke, J.E., Jenkins, M.L., Boulanger, M.J.

(2018) Nat Commun 9: 3772-3772

Released	2018-09-26
Method	X-RAY DIFFRACTION 3.10001148084 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-11A (protein) SH3 domain-binding protein 5 (protein)

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6IXV \| pdb_00006ixv	Download File View File

Crystal structure of SH3BP5-Rab11a

Goto-Ito, S., Yamagata, A., Sato, Y., Fukai, S.

(2019) Life Sci Alliance 2:

Released	2019-03-20
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-11A (protein) SH3 domain-binding protein 5 (protein)
Unique Ligands	PO4

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6IY1 \| pdb_00006iy1	Download File View File

Structure of human Ras-related protein Rab11

Ma, P., Li, S., Li, J.

To be published

Released	2019-12-18
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein Rab-11A (protein)
Unique Ligands	GDP

Explore in 3D

8VOF \| pdb_00008vof	Download File View File

GI targeted CpPI4K inhibitor

Knapp, M.S., Cuellar, C., Mamo, M.

(2024) Nat Microbiol 9: 2817-2835

Released	2024-09-04
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Isoform 2 of Phosphatidylinositol 4-kinase beta,Isoform 2 of Phosphatidylinositol 4-kinase beta,Phosphatidylinositol 4-kinase beta (protein) Ras-related protein Rab-11A (protein)
Unique Ligands	A1ADE, GDP, SO4

1 to 18 of 18 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1YZK | pdb_00001yzk

GppNHp bound Rab11 GTPase

4LWZ | pdb_00004lwz

Crystal structure of Myo5b globular tail domain in complex with inactive Rab11a

4LX0 | pdb_00004lx0

Crystal structure of Myo5b globular tail domain in complex with active Rab11a

4UJ4 | pdb_00004uj4

Crystal structure of human Rab11-Rabin8-FIP3

5C46 | pdb_00005c46

Crystal structure of an engineered construct of phosphatidylinositol 4 kinase III beta in complex with GTP gamma S loaded Rab11

5C4G | pdb_00005c4g

Crystal structure of an engineered construct of phosphatidylinositol 4 kinase III beta with the inhibitor BQR695 in complex with GDP loaded Rab11

5EUQ | pdb_00005euq

Crystal structure of an engineered construct of phosphatidylinositol 4 kinase III beta with a potent and selective inhibitor in complex with GDP loaded Rab11

5EZ5 | pdb_00005ez5

Crystal structure of active Rab11A (S20V) in complex with GTP

5FBL | pdb_00005fbl

PI4KB in complex with Rab11 and the MI356 Inhibitor

5FBQ | pdb_00005fbq

PI4KB in complex with Rab11 and the MI358 Inhibitor

5FBR | pdb_00005fbr

PI4KB in complex with Rab11 and the MI359 Inhibitor

5FBV | pdb_00005fbv

PI4KB in complex with Rab11 and the MI364 Inhibitor

5FBW | pdb_00005fbw

PI4KB in complex with Rab11 and the MI369 Inhibitor

5JCZ | pdb_00005jcz

Rab11 bound to MyoVa-GTD

6DJL | pdb_00006djl

Crystal structure of the Rab11 GEF SH3BP5 bound to nucleotide free Rab11A

6IXV | pdb_00006ixv

Crystal structure of SH3BP5-Rab11a

6IY1 | pdb_00006iy1

Structure of human Ras-related protein Rab11

8VOF | pdb_00008vof

GI targeted CpPI4K inhibitor

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1YZK | pdb_00001yzk

4LWZ | pdb_00004lwz

4LX0 | pdb_00004lx0

4UJ4 | pdb_00004uj4

5C46 | pdb_00005c46

5C4G | pdb_00005c4g

5EUQ | pdb_00005euq

5EZ5 | pdb_00005ez5

5FBL | pdb_00005fbl

5FBQ | pdb_00005fbq

5FBR | pdb_00005fbr

5FBV | pdb_00005fbv

5FBW | pdb_00005fbw

5JCZ | pdb_00005jcz

6DJL | pdb_00006djl

6IXV | pdb_00006ixv

6IY1 | pdb_00006iy1

8VOF | pdb_00008vof