RCSB PDB: Search

6KL9	Download File View File

Structure of LbCas12a-crRNA complex bound to AcrVA4 (form A complex)

Peng, R., Li, Z., Xu, Y., He, S., Peng, Q., Shi, Y., Gao, G.F.

(2019) Proc Natl Acad Sci U S A 116: 18928-18936

Released	2019-09-11
Method	ELECTRON MICROSCOPY 3.25 Å
Organisms	Lachnospiraceae bacterium Moraxella bovoculi synthetic construct
Macromolecule	AcrVA4 (protein) LbCas12a (protein) RNA (42-MER) (nucleic acid)
Unique Ligands	MG

6KLB	Download File View File

Structure of LbCas12a-crRNA complex bound to AcrVA4 (form B complex)

Peng, R., Li, Z., Xu, Y., He, S., Peng, Q., Shi, Y., Gao, G.F.

(2019) Proc Natl Acad Sci U S A 116: 18928-18936

Released	2019-09-11
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Lachnospiraceae bacterium Moraxella bovoculi synthetic construct
Macromolecule	AcrVA4 (protein) LbCas12a (protein) crRNA (nucleic acid)
Unique Ligands	MG

6KLC	Download File View File

Structure of apo Lassa virus polymerase

Peng, R., Xu, X., Jing, J., Peng, Q., Gao, G.F., Shi, Y.

(2020) Nature 579: 615-619

Released	2020-03-18
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Mammarenavirus lassaense
Macromolecule	RNA-directed RNA polymerase L (protein)
Unique Ligands	MN

6KLD	Download File View File

Structure of apo Machupo virus polymerase

Peng, R., Xu, X., Jing, J., Peng, Q., Gao, G.F., Shi, Y.

(2020) Nature 579: 615-619

Released	2020-03-18
Method	ELECTRON MICROSCOPY 3.58 Å
Organisms	Mammarenavirus machupoense
Macromolecule	RNA-directed RNA polymerase L (protein)
Unique Ligands	MN, ZN

6KLE	Download File View File

Monomeric structure of Machupo virus polymerase bound to vRNA promoter

Peng, R., Xu, X., Jing, J., Peng, Q., Gao, G.F., Shi, Y.

(2020) Nature 579: 615-619

Released	2020-03-18
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Mammarenavirus machupoense synthetic construct
Macromolecule	RNA-directed RNA polymerase L (protein) RNA (5'-R(GPCPCPUPAPGPGPAPUPCPCPAPCPUPGPUPGPCP*G)-3') (nucleic acid)
Unique Ligands	MN, ZN

6KLH	Download File View File

Dimeric structure of Machupo virus polymerase bound to vRNA promoter

Peng, R., Xu, X., Jing, J., Peng, Q., Gao, G.F., Shi, Y.

(2020) Nature 579: 615-619

Released	2020-03-18
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Mammarenavirus machupoense synthetic construct
Macromolecule	RNA-directed RNA polymerase L (protein) RNA (5'-R(GPCPCPUPAPGPGPAPUPCPCPAPCPUPGPUPGPCP*G)-3') (nucleic acid)
Unique Ligands	MN, ZN

6KUJ	Download File View File

Structure of influenza D virus polymerase bound to cRNA promoter in class 1

(2019) Nat Microbiol

Released	2019-10-02
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Influenza D virus (D/swine/Oklahoma/1334/2011) synthetic construct
Macromolecule	Polymerase 3 (protein) Polymerase PB2 (protein) RNA-directed RNA polymerase catalytic subunit (protein) 3'-cRNA promoter (nucleic acid) 5'-cRNA promoter (nucleic acid)

6KUK	Download File View File

Structure of influenza D virus polymerase bound to vRNA promoter in mode A conformation (class A1)

(2019) Nat Microbiol 4: 1750-1759

Released	2019-10-02
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Influenza D virus (D/swine/Oklahoma/1334/2011) synthetic construct
Macromolecule	Polymerase 3 (protein) Polymerase PB2 (protein) RNA-directed RNA polymerase catalytic subunit (protein) 3'-vRNA (nucleic acid) 5'-vRNA (nucleic acid)

6KUP	Download File View File

Structure of influenza D virus polymerase bound to vRNA promoter in Mode A conformation(Class A2)

(2019) Nat Microbiol 4: 1750-1759

Released	2019-10-02
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Influenza D virus (D/swine/Oklahoma/1334/2011) synthetic construct
Macromolecule	Polymerase 3 (protein) Polymerase PB2 (protein) RNA-directed RNA polymerase catalytic subunit (protein) 3'-vRNA (nucleic acid) 5'-vRNA (nucleic acid)

6KUR	Download File View File

Structure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation (Class B1)

(2019) Nat Microbiol 4: 1750-1759

Released	2019-10-02
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Influenza D virus (D/swine/Oklahoma/1334/2011) synthetic construct
Macromolecule	Polymerase 3 (protein) Polymerase PB2 (protein) RNA-directed RNA polymerase catalytic subunit (protein) 3'-vRNA (nucleic acid) 5'-vRNA (nucleic acid)

6KUT	Download File View File

Structure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation (Class B2)

(2019) Nat Microbiol 4: 1750-1759

Released	2019-10-02
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Influenza D virus (D/swine/Oklahoma/1334/2011) synthetic construct
Macromolecule	Polymerase 3 (protein) Polymerase PB2 (protein) RNA-directed RNA polymerase catalytic subunit (protein) 3'-vRNA (nucleic acid) 5'-vRNA (nucleic acid)

6KUU	Download File View File

Structure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation (Class B3)

To be published

Released	2019-12-11
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Influenza D virus (D/swine/Oklahoma/1334/2011) synthetic construct
Macromolecule	Polymerase 3 (protein) Polymerase PB2 (protein) RNA-directed RNA polymerase catalytic subunit (protein) 3'-vRNA (nucleic acid) 5'-vRNA (nucleic acid)

6KUV	Download File View File

Structure of influenza D virus polymerase bound to cRNA promoter in class 2

(2019) Nat Microbiol 4: 1750-1759

Released	2019-10-02
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Influenza D virus (D/swine/Oklahoma/1334/2011) synthetic construct
Macromolecule	Polymerase 3 (protein) Polymerase PB2 (protein) RNA-directed RNA polymerase catalytic subunit (protein) 3'-cRNA (nucleic acid) 5'-cRNA (nucleic acid)

6KV5	Download File View File

Structure of influenza D virus apo polymerase

(2019) Nat Microbiol 4: 1750-1759

Released	2019-10-02
Method	ELECTRON MICROSCOPY 4.6 Å
Organisms	Influenza D virus (D/swine/Oklahoma/1334/2011)
Macromolecule	Polymerase 3 (protein) Polymerase PB2 (protein) RNA-directed RNA polymerase catalytic subunit (protein)

7BW4	Download File View File

Structure of the RNA-dependent RNA polymerase from SARS-CoV-2

Peng, Q., Peng, R., Shi, Y.

(2020) Cell Rep 31: 107774-107774

Released	2020-05-27
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 7 (protein) Non-structural protein 8 (protein) RNA-directed RNA polymerase (protein)
Unique Ligands	ZN

7CKL	Download File View File

Structure of Lassa virus polymerase bound to Z matrix protein

(2021) Nat Microbiol 6: 921-931

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.88 Å
Organisms	Mammarenavirus lassaense
Macromolecule	RING finger protein Z (protein) RNA-directed RNA polymerase L (protein)
Unique Ligands	MN, ZN

7CKM	Download File View File

Structure of Machupo virus polymerase bound to Z matrix protein (monomeric complex)

(2021) Nat Microbiol 6: 921-931

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.37 Å
Organisms	Mammarenavirus machupoense
Macromolecule	RING finger protein Z (protein) RNA-directed RNA polymerase L (protein)
Unique Ligands	MN, ZN

7CTT	Download File View File

Cryo-EM structure of Favipiravir bound to replicating polymerase complex of SARS-CoV-2 in the pre-catalytic state.

Peng, Q., Peng, R., Shi, Y.

(2021) Innovation (Camb) 2: 100080-100080

Released	2020-09-02
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 7 (protein) Non-structural protein 8 (protein) RNA-directed RNA polymerase (protein) Primer-RNA (5'-R(PUPUPCPUPCPCPUPAPAPGPAPAPGPCPUPA)-3') (nucleic acid) Template-RNA (5'-R(PAPCPUPAPGPCPUPUPCPUPUPAPGPGPAPGPAPA)-3') (nucleic acid)
Unique Ligands	GE6, MG, ZN

7EL9	Download File View File

Structure of Machupo virus L polymerase in complex with Z protein and 3'-vRNA (dimeric complex)

Peng, R., Xu, X., Peng, Q., Shi, Y.

(2021) Nat Microbiol 6: 921-931

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Mammarenavirus machupoense
Macromolecule	RING finger protein Z (protein) RNA-directed RNA polymerase L (protein) Machupo virus 3'-vRNA promoter (nucleic acid)
Unique Ligands	MN, ZN

7ELA	Download File View File

Structure of Lassa virus polymerase in complex with 3'-vRNA and Z mutant (F36A)

(2021) Nat Microbiol 6: 921-931

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Mammarenavirus lassaense
Macromolecule	RING finger protein Z (protein) RNA-directed RNA polymerase L (protein) 3-'vRNA promoter (nucleic acid)
Unique Ligands	MN, ZN

7ELB	Download File View File

Structure of Machupo virus L polymerase in complex with Z protein (dimeric form)

Peng, R., Xu, X., Peng, Q., Shi, Y.

(2021) Nat Microbiol 6: 921-931

Released	2021-05-05
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Mammarenavirus machupoense
Macromolecule	RING finger protein Z (protein) RNA-directed RNA polymerase L (protein)
Unique Ligands	MN, ZN

7ELC	Download File View File

Structure of monomeric complex of MACV L bound to Z and 3'-vRNA

(2021) Nat Microbiol 6: 921-931

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Mammarenavirus machupoense
Macromolecule	RING finger protein Z (protein) RNA-directed RNA polymerase L (protein) 3'-vRNA promoter (nucleic acid)
Unique Ligands	MN, ZN

7YER	Download File View File

The structure of EBOV L-VP35 complex

Shi, Y., Yuan, B., Peng, Q.

(2022) Nature 610: 394-401

Released	2022-10-05
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Ebola virus
Macromolecule	Polymerase cofactor VP35 (protein) RNA-directed RNA polymerase L (protein)
Unique Ligands	ZN

7YES	Download File View File

The structure of EBOV L-VP35-RNA complex (state2)

Shi, Y., Yuan, B., Peng, Q.

(2022) Nature 610: 394-401

Released	2022-10-05
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Ebola virus
Macromolecule	RNA-directed RNA polymerase L (protein) VP35 of EBOV L-VP35 complex (protein)
Unique Ligands	ZN