RCSB PDB: Search

2EKE \| pdb_00002eke	Download File View File

Structure of a SUMO-binding-motif mimic bound to Smt3p-Ubc9p: conservation of a noncovalent Ubiquitin-like protein-E2 complex as a platform for selective interactions within a SUMO pathway

Duda, D.M., Schulman, B.A.

(2007) J Mol Biology 369: 619-630

Released	2007-05-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	SUMO-conjugating enzyme UBC9 (protein) Ubiquitin-like protein SMT3 (protein)

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2K1F \| pdb_00002k1f	Download File View File

SUMO-3 from Drosophila melanogaster (dsmt3)

Kumar, D., Misra, J.R., Misra, A.K., Chugh, J., Sharma, S., Hosur, R.V.

(2009) Proteins 75: 1046-1050

Released	2009-03-10
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	CG4494-PA (protein)

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3QHT \| pdb_00003qht	Download File View File

Crystal Structure of the Monobody ySMB-1 bound to yeast SUMO

Koide, S., Gilbreth, R.N.

(2011) Proc Natl Acad Sci U S A 108: 7751-7756

Released	2011-05-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae synthetic construct
Macromolecule	Monobody ySMB-1 (protein) Ubiquitin-like protein SMT3 (protein)
Unique Ligands	GOL

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3TIX \| pdb_00003tix	Download File View File

Crystal structure of the Chp1-Tas3 complex core

Schalch, T., Joshua-Tor, L.

(2011) Nat Struct Mol Biol 18: 1351-1357

Released	2011-11-16
Method	X-RAY DIFFRACTION 2.9001 Å
Organisms	Saccharomyces cerevisiae S288C Schizosaccharomyces pombe 972h-
Macromolecule	Chromo domain-containing protein 1 (protein) Ubiquitin-like protein SMT3,RNA-induced transcriptional silencing complex protein tas3 (protein)
Unique Ligands	CL, K

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3UF8 \| pdb_00003uf8	Download File View File

Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with a G95A surface mutation from Burkholderia pseudomallei complexed with FK506

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2014) Antimicrob Agents Chemother 58: 1458-1467

Released	2011-11-09
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Burkholderia pseudomallei 1710b Saccharomyces cerevisiae S288C
Macromolecule	Ubiquitin-like protein SMT3, Peptidyl-prolyl cis-trans isomerase (protein)
Unique Ligands	FK5

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3UQA \| pdb_00003uqa	Download File View File

Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with surface mutation A54E from Burkholderia pseudomallei complexed with FK506

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2014) Antimicrob Agents Chemother 58: 1458-1467

Released	2011-12-07
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Burkholderia pseudomallei 1710b Saccharomyces cerevisiae S288C
Macromolecule	Ubiquitin-like protein SMT3, Peptidyl-prolyl cis-trans isomerase (protein)
Unique Ligands	CL, FK5, PEG

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3UQB \| pdb_00003uqb	Download File View File

Crystal structure of a SMT Fusion PEPTIDYL-PROLYL CIS-TRANS ISOMERASE with surface mutation D44G from Burkholderia pseudomallei complexed with FK506

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2014) Antimicrob Agents Chemother 58: 1458-1467

Released	2011-11-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Burkholderia pseudomallei 1710b Saccharomyces cerevisiae S288C
Macromolecule	Ubiquitin-like protein SMT3, Peptidyl-prolyl cis-trans isomerase (protein)
Unique Ligands	FK5

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3V60 \| pdb_00003v60	Download File View File

Structure of S. cerevisiae PCNA conjugated to SUMO on lysine 164

Armstrong, A.A., Mohideen, F., Lima, C.D.

(2012) Nature 483: 59-63

Released	2012-02-29
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Proliferating cell nuclear antigen (protein) Ubiquitin-like protein SMT3 (protein)
Unique Ligands	SO4

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3V61 \| pdb_00003v61	Download File View File

Structure of S. cerevisiae PCNA conjugated to SUMO on lysine 164

Armstrong, A.A., Mohideen, F., Lima, C.D.

(2012) Nature 483: 59-63

Released	2012-02-29
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Proliferating cell nuclear antigen (protein) Ubiquitin-like protein SMT3 (protein)
Unique Ligands	BA, NEQ

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3V62 \| pdb_00003v62	Download File View File

Structure of the S. cerevisiae Srs2 C-terminal domain in complex with PCNA conjugated to SUMO on lysine 164

Armstrong, A.A., Mohideen, F., Lima, C.D.

(2012) Nature 483: 59-63

Released	2012-02-29
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	ATP-dependent DNA helicase SRS2 (protein) Proliferating cell nuclear antigen (protein) Ubiquitin-like protein SMT3 (protein)
Unique Ligands	NEQ, SO4

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3VAW \| pdb_00003vaw	Download File View File

Crystal structure of a smt fusion peptidyl-prolyl cis-trans isomerase with surface mutation v3i from burkholderia pseudomallei complexed with fk506

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2014) Antimicrob Agents Chemother 58: 1458-1467

Released	2012-01-18
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Burkholderia pseudomallei 1710b Saccharomyces cerevisiae S288C
Macromolecule	Ubiquitin-like protein SMT3,Peptidyl-prolyl cis-trans isomerase (protein)
Unique Ligands	FK5

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4FN2 \| pdb_00004fn2	Download File View File

Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with surface mutation D44G from Burkholderia pseudomallei complexed with CJ37

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2014) Antimicrob Agents Chemother 58: 1458-1467

Released	2012-08-01
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Burkholderia pseudomallei 1710b Saccharomyces cerevisiae S288C
Macromolecule	Ubiquitin-like protein SMT3, Peptidyl-prolyl cis-trans isomerase (protein)
Unique Ligands	854

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4G50 \| pdb_00004g50	Download File View File

Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with surface mutation D44G from Burkholderia pseudomallei complexed with CJ168

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2014) Antimicrob Agents Chemother 58: 1458-1467

Released	2012-08-01
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Burkholderia pseudomallei 1710b Saccharomyces cerevisiae S288C
Macromolecule	Ubiquitin-like protein SMT3, Peptidyl-prolyl cis-trans isomerase (protein)
Unique Ligands	861, EDO, FMT

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4GGQ \| pdb_00004ggq	Download File View File

Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with CJ40

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2014) Antimicrob Agents Chemother 58: 1458-1467

Released	2012-08-15
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Burkholderia pseudomallei 1710b Saccharomyces cerevisiae S288C
Macromolecule	Ubiquitin-like protein SMT3, Peptidyl-prolyl cis-trans isomerase (protein)
Unique Ligands	861, CA, PEG

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4GIV \| pdb_00004giv	Download File View File

Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with surface mutation D44G from Burkholderia pseudomallei complexed with CJ183

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2014) Antimicrob Agents Chemother 58: 1458-1467

Released	2012-09-05
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Burkholderia pseudomallei 1710b Saccharomyces cerevisiae S288C
Macromolecule	Ubiquitin-like protein SMT3, Peptidyl-prolyl cis-trans isomerase (protein)
Unique Ligands	4GI, FMT

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5D6J \| pdb_00005d6j	Download File View File

Crystal structure of a mycobacterial protein

Li, W.J., Bi, L.J.

(2015) Sci Rep 5: 15493-15493

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mycolicibacterium smegmatis MC2 155 Saccharomyces cerevisiae S288C
Macromolecule	Acyl-CoA synthase (protein) Ubiquitin-like protein SMT3 (protein)
Unique Ligands	ATP, MG

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5JNE \| pdb_00005jne	Download File View File

E2-SUMO-Siz1 E3-SUMO-PCNA complex

Lima, C.D., Streich Jr., F.C.

(2016) Nature 536: 304-308

Released	2016-08-10
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	E3 SUMO-protein ligase SIZ1,Ubiquitin-like protein SMT3 (protein) Proliferating cell nuclear antigen (protein) SUMO-conjugating enzyme UBC9 (protein) Ubiquitin-like protein SMT3 (protein)
Unique Ligands	6LN, GOL, ZN

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5KLX \| pdb_00005klx	Download File View File

Crystal Structure of SMT Fusion Peptidyl-Prolyl Cis-Trans Isomerase from Burkholderia Pseudomallei Complexed with SF110

Fox III, D., Edwards, T.E.

To be published

Released	2017-05-31
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Burkholderia pseudomallei 1710b Saccharomyces cerevisiae S288C
Macromolecule	Chimera protein of Ubiquitin-like protein SMT3 and Peptidyl-prolyl cis-trans isomerase (protein)
Unique Ligands	6UO, IMD, MG, PEG

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5V8T \| pdb_00005v8t	Download File View File

Crystal structure of SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with SF354

Lorimer, D.D., Dranow, D.M., Seufert, F., Abendroth, J., Holzgrabe, U.

To be published

Released	2018-03-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Burkholderia pseudomallei Saccharomyces cerevisiae S288C
Macromolecule	Ubiquitin-like protein SMT3,Peptidyl-prolyl cis-trans isomerase (protein)
Unique Ligands	8ZV, FMT, MG

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5XQM \| pdb_00005xqm	Download File View File

NMR solution structure of SMO1, Sumo homologue in Caenorhabditis elegans

Gowda, C.M., Surana, P., Das, R.

(2017) PLoS One 12: e0186622-e0186622

Released	2017-11-08
Method	SOLUTION NMR
Organisms	Caenorhabditis elegans
Macromolecule	Small ubiquitin-related modifier (protein)

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5YC2 \| pdb_00005yc2	Download File View File

Crystal structure of inner membrane protein Bqt4 in complex with telomeric protein Rap1

Chen, Y., Hu, C.

(2019) Nucleic Acids Res 47: 1573-1584

Released	2018-11-14
Method	X-RAY DIFFRACTION 2.704 Å
Organisms	Saccharomyces cerevisiae S288C Schizosaccharomyces pombe 972h-
Macromolecule	DNA-binding protein rap1 (protein) Ubiquitin-like protein SMT3,Bouquet formation protein 4 (protein)

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5YCA \| pdb_00005yca	Download File View File

Crystal structure of inner membrane protein Bqt4 in complex with LEM2

Chen, Y., Hu, C.

(2019) Nucleic Acids Res 47: 1573-1584

Released	2018-11-14
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Saccharomyces cerevisiae S288C Schizosaccharomyces pombe 972h-
Macromolecule	Lap-Emerin-Man domain protein 2 (protein) Ubiquitin-like protein SMT3,Bouquet formation protein 4 (protein)

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6CFP \| pdb_00006cfp	Download File View File

CRYSTAL STRUCTURE OF POLYMERASE ACID PROTEIN (PA) FROM INFLUENZA A VIRUS, WILSON-SMITH/1933 (H1N1) BOUND TO FRAGMENT HIT BSI-70565 1-{1-[4-FLUOROPHENYL)METHYL]-2-METHYL-1H-IMIDAZOL-4-YL}ETHAN-1-ONE

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2018-04-11
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Influenza A virus (A/Wilson-Smith/1933(H1N1)) Saccharomyces cerevisiae S288C
Macromolecule	Ubiquitin-like protein SMT3,Polymerase acidic protein (protein)
Unique Ligands	DMS, EZS

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6O49 \| pdb_00006o49	Download File View File

CRYSTAL STRUCTURE OF SMT FUSION PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FROM BURKHOLDERIA PSEUDOMALLEI COMPLEXED WITH SF339

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2020-02-12
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Burkholderia pseudomallei 1710b Saccharomyces cerevisiae S288C
Macromolecule	Ubiquitin-like protein SMT3,Peptidyl-prolyl cis-trans isomerase (protein)
Unique Ligands	CA, EDO, LL7

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6O4A \| pdb_00006o4a	Download File View File

CRYSTAL STRUCTURE OF SMT FUSION PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FROM BURKHOLDERIA PSEUDOMALLEI COMPLEXED WITH SF355

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2020-02-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Burkholderia pseudomallei 1710b Saccharomyces cerevisiae S288C
Macromolecule	Ubiquitin-like protein SMT3,Peptidyl-prolyl cis-trans isomerase (protein)
Unique Ligands	CA, LLD

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2EKE | pdb_00002eke

2K1F | pdb_00002k1f

3QHT | pdb_00003qht

3TIX | pdb_00003tix

3UF8 | pdb_00003uf8

3UQA | pdb_00003uqa

3UQB | pdb_00003uqb

3V60 | pdb_00003v60

3V61 | pdb_00003v61

3V62 | pdb_00003v62

3VAW | pdb_00003vaw

4FN2 | pdb_00004fn2

4G50 | pdb_00004g50

4GGQ | pdb_00004ggq

4GIV | pdb_00004giv

5D6J | pdb_00005d6j

5JNE | pdb_00005jne

5KLX | pdb_00005klx

5V8T | pdb_00005v8t

5XQM | pdb_00005xqm

5YC2 | pdb_00005yc2

5YCA | pdb_00005yca

6CFP | pdb_00006cfp

6O49 | pdb_00006o49

6O4A | pdb_00006o4a