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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "UNC93B"

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Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Homo sapiens (18)
	Danio rerio (15)
	Xenopus tropicalis (2)
	synthetic construct (1)

Taxonomy

	Eukaryota (22)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (22)

Polymer Entity Type

Protein (22)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (5)
	2.0 - 2.5 (2)
	2.5 - 3.0 (6)
	3.0 - 3.5 (6)

Release Date

	2010 - 2014 (9)
	2015 - 2019 (13)

Enzyme Classification Name

	Transferases (22)
	Hydrolases (22)
	Ligases (9)

Symmetry Type

	Asymmetric (21)
	Cyclic (2)

SCOP Classification

	Alpha and beta proteins (a/b) (9)
	Artifacts (6)

AllSelected

1 to 22 of 22 Structures

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4RMG \| pdb_00004rmg	Download File View File

Human Sirt2 in complex with SirReal2 and NAD+

Rumpf, T., Schiedel, M., Karaman, B., Roessler, C., North, B.J., Lehotzky, A., Olah, J., Ladwein, K.I., Schmidtkunz, K., Gajer, M., Pannek, M., Steegborn, C., Sinclair, D.A., Gerhardt, S., Ovadi, J., Schutkowski, M., Sippl, W., Einsle, O., Jung, M.

(2015) Nat Commun 6: 6263-6263

Released	2015-02-25
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent protein deacetylase sirtuin-2 (protein)
Unique Ligands	3TE, NAD, ZN

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4RMH \| pdb_00004rmh	Download File View File

Human Sirt2 in complex with SirReal2 and Ac-Lys-H3 peptide

(2015) Nat Commun 6: 6263-6263

Released	2015-02-25
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Homo sapiens
Macromolecule	Ac-Lys-H3 peptide (protein) NAD-dependent protein deacetylase sirtuin-2 (protein)
Unique Ligands	3TE, ZN

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4RMI \| pdb_00004rmi	Download File View File

Human Sirt2 in complex with SirReal1 and Ac-Lys-OTC peptide

(2015) Nat Commun 6: 6263-6263

Released	2015-02-25
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Ac-Lys-OTC peptide (protein) NAD-dependent protein deacetylase sirtuin-2 (protein)
Unique Ligands	3TK, ZN

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4RMJ \| pdb_00004rmj	Download File View File

Human Sirt2 in complex with ADP ribose and nicotinamide

(2015) Nat Commun 6: 6263-6263

Released	2015-02-25
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent protein deacetylase sirtuin-2 (protein)
Unique Ligands	AR6, EDO, NA, NCA, PEG, PGE, ZN

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4UTN \| pdb_00004utn	Download File View File

Crystal structure of zebrafish Sirtuin 5 in complex with succinylated CPS1-peptide

Pannek, M., Gertz, M., Steegborn, C.

(2014) Angew Chem Int Ed Engl 53: 10728

Released	2014-08-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Danio rerio Homo sapiens
Macromolecule	NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL (protein) SUCCINYL-CPS1-PEPTIDE (protein)
Unique Ligands	DMS, EDO, EPE, ZN

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4UTR \| pdb_00004utr	Download File View File

Crystal structure of zebrafish Sirtuin 5 in complex with glutarylated CPS1-peptide

Pannek, M., Gertz, M., Steegborn, C.

(2014) Angew Chem Int Ed Engl 53: 10728

Released	2014-08-20
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Danio rerio Homo sapiens
Macromolecule	GLUTARYL-CPS1 PEPTIDE (protein) NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL (protein)
Unique Ligands	DMS, EDO, GUA, NA, ZN

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4UTV \| pdb_00004utv	Download File View File

Crystal structure of zebrafish Sirtuin 5 in complex with 3-phenyl- succinylated CPS1-peptide

Pannek, M., Gertz, M., Steegborn, C.

(2014) Angew Chem Int Ed Engl 53: 10728

Released	2014-08-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Danio rerio Homo sapiens
Macromolecule	CARBAMOYLPHOSPHATE SYNTHETASE I (protein) NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL (protein)
Unique Ligands	DMS, EPE, F9V, FSL, NA, ZN

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4UTX \| pdb_00004utx	Download File View File

Crystal structure of zebrafish Sirtuin 5 in complex with 3-nitro- propionylated CPS1-peptide

Pannek, M., Gertz, M., Steegborn, C.

(2014) Angew Chem Int Ed Engl 53: 10728

Released	2014-08-20
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Danio rerio Homo sapiens
Macromolecule	CARBAMOYLPHOSPHATE SYNTHETASE I (protein) NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL (protein)
Unique Ligands	3NP, DMS, EDO, EPE, NA, ZN

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4UTZ \| pdb_00004utz	Download File View File

Crystal structure of zebrafish Sirtuin 5 in complex with adipoylated CPS1-peptide

Pannek, M., Gertz, M., Steegborn, C.

(2014) Angew Chem Int Ed Engl 53: 10728

Released	2014-08-20
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Danio rerio Homo sapiens
Macromolecule	CARBAMOYLPHOSPHATE SYNTHETASE I (protein) SIRTUIN 5 (protein)
Unique Ligands	0L1, DMS, EDO, EPE, NA, ZN

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4UU7 \| pdb_00004uu7	Download File View File

Crystal structure of zebrafish Sirtuin 5 in complex with 3-methyl- succinylated CPS1-peptide

Pannek, M., Gertz, M., Steegborn, C.

(2014) Angew Chem Int Ed Engl 53: 10728

Released	2014-08-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Danio rerio Homo sapiens
Macromolecule	CARBAMOYLPHOSPHATE SYNTHETASE I (protein) NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL (protein)
Unique Ligands	DMS, EDO, EPE, JO3, NA, SUH, ZN

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4UU8 \| pdb_00004uu8	Download File View File

Crystal structure of zebrafish Sirtuin 5 in complex with 3,3-dimethyl- succinylated CPS1-peptide

Pannek, M., Gertz, M., Steegborn, C.

(2014) Angew Chem Int Ed Engl 53: 10728

Released	2014-08-20
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Danio rerio Homo sapiens
Macromolecule	CARBAMOYLPHOSPHATE SYNTHETASE I (protein) NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL (protein)
Unique Ligands	DMS, EDO, EPE, NA, WOC, ZN

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4UUA \| pdb_00004uua	Download File View File

Crystal structure of zebrafish Sirtuin 5 in complex with 3S-Z-amino- succinylated CPS1-peptide

Pannek, M., Gertz, M., Steegborn, C.

(2014) Angew Chem Int Ed Engl 53: 10728

Released	2014-08-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Danio rerio Homo sapiens
Macromolecule	CARBAMOYLPHOSPHATE SYNTHETASE I (protein) NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL (protein)
Unique Ligands	DMS, EDO, EPE, NA, NX6, ZN

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4UUB \| pdb_00004uub	Download File View File

Crystal structure of zebrafish Sirtuin 5 in complex with 2R-butyl- succinylated CPS1-peptide

Pannek, M., Gertz, M., Steegborn, C.

(2014) Angew Chem Int Ed Engl 53: 10728

Released	2014-08-20
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Danio rerio Homo sapiens
Macromolecule	CARBAMOYLPHOSPHATE SYNTHETASE I (protein) NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL (protein)
Unique Ligands	DMS, EDO, EPE, NA, SU8, ZN

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5OJ7 \| pdb_00005oj7	Download File View File

Sirtuin 4 orthologue from Xenopus Tropicalis in complex with ADP-ribose

Pannek, M., Steegborn, C.

(2017) Nat Commun 8: 1513-1513

Released	2017-11-29
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Xenopus tropicalis
Macromolecule	NAD-dependent protein deacylase (protein)
Unique Ligands	AR6, EDO, GOL, ZN

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5OJN \| pdb_00005ojn	Download File View File

Sirtuin 4 from Xenopus tropicalis in complex with thioacetyl-ADP-ribose

Pannek, M., Steegborn, C.

(2017) Nat Commun 8: 1513-1513

Released	2017-11-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Xenopus tropicalis
Macromolecule	NAD-dependent protein deacylase (protein)
Unique Ligands	9X8, ZN

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5OJO \| pdb_00005ojo	Download File View File

Sirtuin 5 from Danio rerio in complex with 3-hydroxy-3-methylglutaryl-CPS1 peptide

Pannek, M., Steegborn, C.

(2017) Nat Commun 8: 1513-1513

Released	2017-11-29
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Danio rerio Homo sapiens
Macromolecule	Carbamoyl-phosphate synthase [ammonia], mitochondrial (protein) NAD-dependent protein deacylase sirtuin-5, mitochondrial (protein)
Unique Ligands	DMS, EDO, EPE, NA, ZN

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6ENX \| pdb_00006enx	Download File View File

Zebrafish Sirt5 in complex with stalled bicyclic intermediate of inhibitory compound 10

Pannek, M., Steegborn, C.

(2017) Angew Chem Int Ed Engl 56: 14836-14841

Released	2017-11-01
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Danio rerio
Macromolecule	NAD-dependent protein deacylase sirtuin-5, mitochondrial (protein)
Unique Ligands	BJW, DMS, ZN

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6EO0 \| pdb_00006eo0	Download File View File

Zebrafish Sirt5 in complex with stalled peptidylimidate and bicyclic intermediate of inhibitory compound 29

Pannek, M., Steegborn, C.

(2017) Angew Chem Int Ed Engl 56: 14836-14841

Released	2017-11-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Danio rerio
Macromolecule	NAD-dependent protein deacylase sirtuin-5, mitochondrial (protein)
Unique Ligands	BV8, BVT, EDO, ZN

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6EQS \| pdb_00006eqs	Download File View File

Human Sirt5 in complex with stalled peptidylimidate intermediate of inhibitory compound 29

Pannek, M., Steegborn, C.

(2017) Angew Chem Int Ed Engl 56: 14836-14841

Released	2017-11-01
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent protein deacylase sirtuin-5, mitochondrial (protein)
Unique Ligands	BU2, BV8, DMS, EDO, ZN

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6FKY \| pdb_00006fky	Download File View File

Crystal structure of zebrafish Sirtuin 5 in complex with 3-(benzylthio)succinyl-CPS1 peptide

Pannek, M., Steegborn, C.

(2018) J Med Chem 61: 2460-2471

Released	2018-03-21
Method	X-RAY DIFFRACTION 2.98 Å
Organisms	Danio rerio Homo sapiens
Macromolecule	3(R)-(phenylthio)succinyl-CPS1 peptide (protein) NAD-dependent protein deacylase sirtuin-5, mitochondrial (protein)
Unique Ligands	DZK, E9N, EDO, EPE, NA, ZN

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6FKZ \| pdb_00006fkz	Download File View File

Crystal structure of zebrafish Sirtuin 5 in complex with 3-(phenylthio)succinyl-CPS1 peptide

Pannek, M., Steegborn, C.

(2018) J Med Chem 61: 2460-2471

Released	2018-05-16
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Danio rerio Homo sapiens
Macromolecule	3(R)-(phenylthio)succinyl-CPS1 peptide (protein) 3(S)-(phenylthio)succinyl-CPS1 peptide (protein) NAD-dependent protein deacylase sirtuin-5, mitochondrial (protein)
Unique Ligands	EPE, GOL, ZN

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6FLG \| pdb_00006flg	Download File View File

Crystal structure of zebrafish Sirtuin 5 in complex with 3(S)-(naphthylthio)succinyl-CPS1 peptide

Pannek, M., Steegborn, C.

(2018) J Med Chem 61: 2460-2471

Released	2018-04-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Danio rerio Homo sapiens
Macromolecule	3(S)-(naphthylthio)succinyl-CPS1 peptide (protein) NAD-dependent protein deacylase sirtuin-5, mitochondrial (protein)
Unique Ligands	DMS, EDO, EPE, ZN

1 to 22 of 22 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4RMG | pdb_00004rmg

4RMH | pdb_00004rmh

4RMI | pdb_00004rmi

4RMJ | pdb_00004rmj

4UTN | pdb_00004utn

4UTR | pdb_00004utr

4UTV | pdb_00004utv

4UTX | pdb_00004utx

4UTZ | pdb_00004utz

4UU7 | pdb_00004uu7

4UU8 | pdb_00004uu8

4UUA | pdb_00004uua

4UUB | pdb_00004uub

5OJ7 | pdb_00005oj7

5OJN | pdb_00005ojn

5OJO | pdb_00005ojo

6ENX | pdb_00006enx

6EO0 | pdb_00006eo0

6EQS | pdb_00006eqs

6FKY | pdb_00006fky

6FKZ | pdb_00006fkz

6FLG | pdb_00006flg