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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "WHSC1L1"

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Search Summary

This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	Homo sapiens (23)
	Xenopus laevis (3)
	Xenopus tropicalis (3)
	synthetic construct (1)

Taxonomy

	Eukaryota (23)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (18)
	ELECTRON MICROSCOPY (3)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (23)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (11)
	2.0 - 2.5 (3)
	2.5 - 3.0 (2)
	3.0 - 3.5 (3)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (4)
	2015 - 2019 (14)
	2020 - 2024 (4)

Enzyme Classification Name

Transferases (23)

Symmetry Type

	Asymmetric (21)
	Cyclic (2)

SCOP Classification

	All alpha proteins (1)
	Membrane and cell surface proteins and peptides (2)
	All beta proteins (2)
	Artifacts (1)

AllSelected

1 to 23 of 23 Structures

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2DAQ \| pdb_00002daq	Download File View File

Solution structure of second PWWP domain of WHSC1L1 protein

Niraula, T.N., Tochio, N., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-06-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	WHSC1L1 protein, isoform long (protein)

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4GND \| pdb_00004gnd	Download File View File

Crystal Structure of NSD3 tandem PHD5-C5HCH domains

Li, F., He, C., Wu, J., Shi, Y.

(2013) J Biological Chem 288: 4692-4703

Released	2013-01-02
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD3 (protein)
Unique Ligands	ZN

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4GNE \| pdb_00004gne	Download File View File

Crystal Structure of NSD3 tandem PHD5-C5HCH domains complexed with H3 peptide 1-7

Li, F., He, C., Wu, J., Shi, Y.

(2013) J Biological Chem 288: 4692-4703

Released	2013-01-02
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Homo sapiens
Macromolecule	Histone H3.3 (protein) Histone-lysine N-methyltransferase NSD3 (protein)
Unique Ligands	ZN

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4GNF \| pdb_00004gnf	Download File View File

Crystal Structure of NSD3 tandem PHD5-C5HCH domains complexed with H3 peptide 1-15

Li, F., He, C., Wu, J., Shi, Y.

(2013) J Biological Chem 288: 4692-4703

Released	2013-01-02
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Histone H3.3 (protein) Histone-lysine N-methyltransferase NSD3 (protein)
Unique Ligands	ZN

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4GNG \| pdb_00004gng	Download File View File

Crystal Structure of NSD3 tandem PHD5-C5HCH domains complexed with H3K9me3 peptide

Li, F., He, C., Wu, J., Shi, Y.

(2013) J Biological Chem 288: 4692-4703

Released	2013-01-02
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Homo sapiens
Macromolecule	Histone H3.3 (protein) Histone-lysine N-methyltransferase NSD3 (protein)
Unique Ligands	GOL, ZN

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4RXJ \| pdb_00004rxj	Download File View File

crystal structure of WHSC1L1-PWWP2

Qin, S., Tempel, W., Dong, A., Li, Y., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

(2021) Biochem Biophys Res Commun 569: 199-206

Released	2015-01-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD3 (protein)
Unique Ligands	UNX

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5UPD \| pdb_00005upd	Download File View File

Methyltransferase domain of human Wolf-Hirschhorn Syndrome Candidate 1-Like protein 1 (WHSC1L1)

Tempel, W., Yu, W., Dong, A., Cerovina, T., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Brown, P.J., Wu, H., Structural Genomics Consortium (SGC)

To be published

Released	2017-02-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD3 (protein)
Unique Ligands	SAM, UNX, ZN

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6CEN \| pdb_00006cen	Download File View File

Crystal Structure of WHSC1L1 in Complex with Inhibitor PEP21

Boriack-Sjodin, P.A., Swinger, K., Farrow, N.A.

(2018) PLoS One 13: e0197082-e0197082

Released	2018-05-09
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Homo sapiens
Macromolecule	ACE-GLY-VAL-NLE-ARG-ILE-NH2 (protein) Histone-lysine N-methyltransferase NSD3 (protein)
Unique Ligands	SAM, ZN

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6G24 \| pdb_00006g24	Download File View File

X-ray structure of NSD3-PWWP1 in complex with compound 3

Boettcher, J., Muellauer, B.J., Weiss-Puxbaum, A., Zoephel, A.

(2019) Nat Chem Biol 15: 822-829

Released	2019-06-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD3 (protein)
Unique Ligands	EH2

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6G25 \| pdb_00006g25	Download File View File

X-ray structure of NSD3-PWWP1 in complex with compound 4

Boettcher, J., Muellauer, B.J., Weiss-Puxbaum, A., Zoephel, A.

(2019) Nat Chem Biol 15: 822-829

Released	2019-06-26
Method	X-RAY DIFFRACTION 1.432 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD3 (protein)
Unique Ligands	EHQ

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6G27 \| pdb_00006g27	Download File View File

X-ray structure of NSD3-PWWP1 in complex with compound 5

Boettcher, J., Muellauer, B.J., Weiss-Puxbaum, A., Zoephel, A.

(2019) Nat Chem Biol 15: 822-829

Released	2019-06-26
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD3 (protein)
Unique Ligands	EHE

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6G29 \| pdb_00006g29	Download File View File

X-ray structure of NSD3-PWWP1 in complex with compound 6

Boettcher, J., Muellauer, B.J., Weiss-Puxbaum, A., Zoephel, A.

(2019) Nat Chem Biol 15: 822-829

Released	2019-06-26
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD3 (protein)
Unique Ligands	EHK

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6G2B \| pdb_00006g2b	Download File View File

X-ray structure of NSD3-PWWP1 in complex with compound 8

Boettcher, J., Muellauer, B.J., Weiss-Puxbaum, A., Zoephel, A.

(2019) Nat Chem Biol 15: 822-829

Released	2019-06-26
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD3 (protein)
Unique Ligands	EH8

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6G2C \| pdb_00006g2c	Download File View File

X-ray structure of NSD3-PWWP1 in complex with compound 9

Boettcher, J., Muellauer, B.J., Weiss-Puxbaum, A., Zoephel, A.

(2019) Nat Chem Biol 15: 822-829

Released	2019-06-26
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD3 (protein)
Unique Ligands	EHT

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6G2E \| pdb_00006g2e	Download File View File

X-ray structure of NSD3-PWWP1 in complex with compound 13

Boettcher, J., Muellauer, B.J., Weiss-Puxbaum, A., Zoephel, A.

(2019) Nat Chem Biol 15: 822-829

Released	2019-06-26
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD3 (protein)
Unique Ligands	EHH

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6G2F \| pdb_00006g2f	Download File View File

X-ray structure of NSD3-PWWP1 in complex with compound 16

Boettcher, J., Muellauer, B.J., Weiss-Puxbaum, A., Zoephel, A.

(2019) Nat Chem Biol 15: 822-829

Released	2019-06-26
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD3 (protein)
Unique Ligands	EHW

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6G2O \| pdb_00006g2o	Download File View File

X-ray structure of NSD3-PWWP1 in complex with compound BI-9321

Boettcher, J., Muellauer, B.J., Weiss-Puxbaum, A., Zoephel, A.

(2019) Nat Chem Biol 15: 822-829

Released	2019-06-26
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD3 (protein)
Unique Ligands	EJE

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6G3P \| pdb_00006g3p	Download File View File

X-ray structure of seleno-methionine labelled NSD3-PWWP1

Boettcher, J., Muellauer, B.J., Weiss-Puxbaum, A., Zoephel, A.

(2019) Nat Chem Biol 15: 822-829

Released	2019-06-26
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD3 (protein)

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6G3T \| pdb_00006g3t	Download File View File

X-ray structure of NSD3-PWWP1

Boettcher, J., Muellauer, B.J., Weiss-Puxbaum, A., Zoephel, A.

(2019) Nat Chem Biol 15: 822-829

Released	2019-06-26
Method	X-RAY DIFFRACTION 2.53 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase NSD3 (protein)
Unique Ligands	EPE

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7CRP \| pdb_00007crp	Download File View File

NSD3 bearing E1181K/T1232A dual mutation in complex with 187-bp NCP (1:1 binding mode)

Li, W., Tian, W., Yuan, G., Deng, P., Gozani, O., Patel, D., Wang, Z.

(2021) Nature 590: 498-503

Released	2020-10-21
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens Xenopus laevis Xenopus tropicalis
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2
Unique Ligands	SAM, ZN

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7CRQ \| pdb_00007crq	Download File View File

NSD3 bearing E1181K/T1232A dual mutation in complex with 187-bp NCP (2:1 binding mode)

Li, W., Tian, W., Yuan, G., Deng, P., Gozani, O., Patel, D., Wang, Z.

(2021) Nature 590: 498-503

Released	2020-10-21
Method	ELECTRON MICROSCOPY 3.15 Å
Organisms	Homo sapiens Xenopus laevis Xenopus tropicalis
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2
Unique Ligands	SAM, ZN

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7CRR \| pdb_00007crr	Download File View File

Native NSD3 bound to 187-bp nucleosome

Li, W., Tian, W., Yuan, G., Deng, P., Gozani, O., Patel, D., Wang, Z.

(2021) Nature 590: 498-503

Released	2020-10-21
Method	ELECTRON MICROSCOPY 3.48 Å
Organisms	Homo sapiens Xenopus laevis Xenopus tropicalis synthetic construct
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2
Unique Ligands	SAM, ZN

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7JYN \| pdb_00007jyn	Download File View File

Solution NMR structure of human Brd3 ET complexed with NSD3(148-184) peptide

Aiyer, S., Swapna, G.V.T., Roth, M.J., Montelione, G.T.

(2021) Structure 29: 886-898.e6

Released	2021-06-23
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 3 (protein) Histone-lysine N-methyltransferase NSD3 (protein)

1 to 23 of 23 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2DAQ | pdb_00002daq

4GND | pdb_00004gnd

4GNE | pdb_00004gne

4GNF | pdb_00004gnf

4GNG | pdb_00004gng

4RXJ | pdb_00004rxj

5UPD | pdb_00005upd

6CEN | pdb_00006cen

6G24 | pdb_00006g24

6G25 | pdb_00006g25

6G27 | pdb_00006g27

6G29 | pdb_00006g29

6G2B | pdb_00006g2b

6G2C | pdb_00006g2c

6G2E | pdb_00006g2e

6G2F | pdb_00006g2f

6G2O | pdb_00006g2o

6G3P | pdb_00006g3p

6G3T | pdb_00006g3t

7CRP | pdb_00007crp

7CRQ | pdb_00007crq

7CRR | pdb_00007crr

7JYN | pdb_00007jyn