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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "X3"

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Homo sapiens (17)
	Aequorea victoria (2)

Taxonomy

Eukaryota (17)

Experimental Method

	ELECTRON MICROSCOPY (15)
	X-RAY DIFFRACTION (2)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (1)
	2.5 - 3.0 (4)
	3.0 - 3.5 (6)
	3.5 - 4.0 (4)
	4.0 - 4.5 (1)

Release Date

	2020 - 2024 (10)
	2025 - 2029 (7)

Membrane Protein Annotation

	MemProtMD (14)
	PDBTM (13)
	mpstruc (13)

Symmetry Type

	Cyclic (14)
	Asymmetric (3)

AllSelected

1 to 17 of 17 Structures

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8TYU \| pdb_00008tyu	Download File View File

High-resolution crystal structure of the SPX domain of XPR1 at 1.4 angstroms

Wang, H., Shears, S.B.

(2024) Cell Rep 43: 114316-114316

Released	2024-06-12
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 53 member 1 (protein)

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8TYV \| pdb_00008tyv	Download File View File

Crystal structure of the SPX domain of XPR1 in complex with IP8

Wang, H., Shears, S.B.

(2024) Cell Rep 43: 114316-114316

Released	2024-06-12
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 53 member 1 (protein)
Unique Ligands	I8P

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8YET \| pdb_00008yet	Download File View File

Cryo EM structure of human phosphate channel XPR1 in complex with IP6

Lu, Y., Yue, C., Zhang, L., Yao, D., Yu, Y., Cao, Y.

(2024) Science 386: eadp3252-eadp3252

Released	2024-10-09
Method	ELECTRON MICROSCOPY 4.16 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 53 member 1 (protein)
Unique Ligands	IHP

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8YEX \| pdb_00008yex	Download File View File

Cryo EM structure of human phosphate channel XPR1 at apo state

Lu, Y., Yue, C., Zhang, L., Yao, D., Yu, Y., Cao, Y.

(2024) Science 386: eadp3252-eadp3252

Released	2024-10-09
Method	ELECTRON MICROSCOPY 3.68 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 53 member 1 (protein)

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8YF4 \| pdb_00008yf4	Download File View File

Cryo EM structure of human phosphate channel XPR1 at open and inward-facing state

Lu, Y., Yue, C., Zhang, L., Yao, D., Yu, Y., Cao, Y.

(2024) Science 386: eadp3252-eadp3252

Released	2024-10-09
Method	ELECTRON MICROSCOPY 3.41 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 53 member 1 (protein)
Unique Ligands	Y01

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8YFD \| pdb_00008yfd	Download File View File

Cryo EM structure of human phosphate channel XPR1 at open state

Lu, Y., Yue, C., Zhang, L., Yao, D., Yu, Y., Cao, Y.

(2024) Science 386: eadp3252-eadp3252

Released	2024-10-09
Method	ELECTRON MICROSCOPY 3.57 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 53 member 1 (protein)

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8YFW \| pdb_00008yfw	Download File View File

Cryo EM structure of human phosphate channel XPR1 at intermediate state

Lu, Y., Yue, C., Zhang, L., Yao, D., Yu, Y., Cao, Y.

(2024) Science 386: eadp3252-eadp3252

Released	2024-10-09
Method	ELECTRON MICROSCOPY 3.65 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 53 member 1 (protein)

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8YFX \| pdb_00008yfx	Download File View File

Cryo EM structure of human phosphate channel XPR1 at inward-facing state

Lu, Y., Yue, C., Zhang, L., Yao, D., Yu, Y., Cao, Y.

(2024) Science 386: eadp3252-eadp3252

Released	2024-10-09
Method	ELECTRON MICROSCOPY 3.56 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 53 member 1 (protein)

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9IJY \| pdb_00009ijy	Download File View File

Homo sapiens Xenotropic and Polytropic Retrovirus Receptor 1 (XPR1) with Y22A/E23A/K26A mutations

He, Q.X., Zhang, R., Chen, Q.F., Li, B.B.

(2025) Nat Commun 16: 683-683

Released	2025-01-22
Method	ELECTRON MICROSCOPY 2.64 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 53 member 1 (protein)
Unique Ligands	6PL, PO4

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9IJZ \| pdb_00009ijz	Download File View File

Wild type Homo sapiens Xenotropic and Polytropic Retrovirus Receptor 1 (XPR1)

He, Q.X., Zhang, R., Chen, Q.F., Li, B.B.

(2025) Nat Commun 16: 683-683

Released	2025-01-22
Method	ELECTRON MICROSCOPY 2.91 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 53 member 1 (protein)
Unique Ligands	6PL, PO4

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9IWS \| pdb_00009iws	Download File View File

Cryo EM structure of human phosphate channel XPR1 in complex with IP7

Lu, Y., Yue, C., Zhang, L., Yao, D., Yu, Y., Cao, Y.

(2024) Science 386: eadp3252-eadp3252

Released	2024-10-09
Method	ELECTRON MICROSCOPY 2.86 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 53 member 1 (protein)
Unique Ligands	I7P

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9J4X \| pdb_00009j4x	Download File View File

CryoEM structure of human XPR1 in apo state

Zhang, W.H., Chen, Y.K., Guan, Z.Y., Liu, Z.

(2025) Nat Commun 16: 18-18

Released	2024-12-04
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 53 member 1 (protein)
Unique Ligands	PC1

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9J51 \| pdb_00009j51	Download File View File

CryoEM structure of human XPR1 in complex with phosphate in state A

Zhang, W.H., Chen, Y.K., Guan, Z.Y., Liu, Z.

(2025) Nat Commun 16: 18-18

Released	2025-01-15
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 53 member 1 (protein)
Unique Ligands	PC1, PO4

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9J52 \| pdb_00009j52	Download File View File

CryoEM structure of human XPR1 in complex with phosphate in state B

Zhang, W.H., Chen, Y.K., Guan, Z.Y., Liu, Z.

(2025) Nat Commun 16: 18-18

Released	2025-01-15
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 53 member 1 (protein)
Unique Ligands	PC1, PO4

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9J53 \| pdb_00009j53	Download File View File

CryoEM structure of human XPR1 in complex with phosphate in state C

Zhang, W.H., Chen, Y.K., Guan, Z.Y., Liu, Z.

(2025) Nat Commun 16: 18-18

Released	2025-01-15
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 53 member 1 (protein)
Unique Ligands	PC1, PO4

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9J97 \| pdb_00009j97	Download File View File

Closed structure of human XPR1

Wang, Y., Wang, Y., Yang, H., Shen, H.

(2025) Cell Res

Released	2025-03-12
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Aequorea victoria Homo sapiens
Macromolecule	Solute carrier family 53 member 1,Green fluorescent protein (protein)
Unique Ligands	8PE, CLR, PO4

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9J98 \| pdb_00009j98	Download File View File

Open structure of human XPR1

Wang, Y., Wang, Y., Yang, H., Shen, H.

(2025) Cell Res

Released	2025-03-12
Method	ELECTRON MICROSCOPY 3.33 Å
Organisms	Aequorea victoria Homo sapiens
Macromolecule	Solute carrier family 53 member 1,Green fluorescent protein (protein)
Unique Ligands	8PE, CLR

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

8TYU | pdb_00008tyu

High-resolution crystal structure of the SPX domain of XPR1 at 1.4 angstroms

8TYV | pdb_00008tyv

Crystal structure of the SPX domain of XPR1 in complex with IP8

8YET | pdb_00008yet

Cryo EM structure of human phosphate channel XPR1 in complex with IP6

8YEX | pdb_00008yex

Cryo EM structure of human phosphate channel XPR1 at apo state

8YF4 | pdb_00008yf4

Cryo EM structure of human phosphate channel XPR1 at open and inward-facing state

8YFD | pdb_00008yfd

Cryo EM structure of human phosphate channel XPR1 at open state

8YFW | pdb_00008yfw

Cryo EM structure of human phosphate channel XPR1 at intermediate state

8YFX | pdb_00008yfx

Cryo EM structure of human phosphate channel XPR1 at inward-facing state

9IJY | pdb_00009ijy

Homo sapiens Xenotropic and Polytropic Retrovirus Receptor 1 (XPR1) with Y22A/E23A/K26A mutations

9IJZ | pdb_00009ijz

Wild type Homo sapiens Xenotropic and Polytropic Retrovirus Receptor 1 (XPR1)

9IWS | pdb_00009iws

Cryo EM structure of human phosphate channel XPR1 in complex with IP7

9J4X | pdb_00009j4x

CryoEM structure of human XPR1 in apo state

9J51 | pdb_00009j51

CryoEM structure of human XPR1 in complex with phosphate in state A

9J52 | pdb_00009j52

CryoEM structure of human XPR1 in complex with phosphate in state B

9J53 | pdb_00009j53

CryoEM structure of human XPR1 in complex with phosphate in state C

9J97 | pdb_00009j97

Closed structure of human XPR1

9J98 | pdb_00009j98

Open structure of human XPR1

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

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Refinement Resolution (Å)

Release Date

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8TYU | pdb_00008tyu

8TYV | pdb_00008tyv

8YET | pdb_00008yet

8YEX | pdb_00008yex

8YF4 | pdb_00008yf4

8YFD | pdb_00008yfd

8YFW | pdb_00008yfw

8YFX | pdb_00008yfx

9IJY | pdb_00009ijy

9IJZ | pdb_00009ijz

9IWS | pdb_00009iws

9J4X | pdb_00009j4x

9J51 | pdb_00009j51

9J52 | pdb_00009j52

9J53 | pdb_00009j53

9J97 | pdb_00009j97

9J98 | pdb_00009j98