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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy ID (Full Lineage) = "13773"

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Search Summary

This query matches 63 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (63)

Scientific Name of Source Organism

	Pyrobaculum aerophilum (43)
	Pyrobaculum aerophilum str. IM2 (20)

Taxonomy

Archaea (63)

Experimental Method

	X-RAY DIFFRACTION (56)
	SOLUTION NMR (7)

Polymer Entity Type

Protein (63)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (19)
	2.0 - 2.5 (19)
	2.5 - 3.0 (12)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (21)
	2005 - 2009 (18)
	2010 - 2014 (13)
	2015 - 2019 (5)
	2020 - 2024 (4)

Enzyme Classification Name

	Transferases (10)
	Oxidoreductases (9)
	Hydrolases (7)
	Lyases (6)
	Isomerases (4)
	Ligases (1)
	Translocases (1)

Membrane Protein Annotation

	MemProtMD (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (23)
	Cyclic (27)
	Dihedral (19)

SCOP Classification

	Artifacts (14)
	Alpha and beta proteins (a+b) (13)
	All alpha proteins (10)
	All beta proteins (4)
	Alpha and beta proteins (a/b) (14)

AllSelected

1 to 25 of 63 Polymer Entities

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1BKB: Entity 1	Download File View File

INITIATION FACTOR 5A FROM ARCHEBACTERIUM PYROBACULUM AEROPHILUM

Peat, T.S., Newman, J., Waldo, G.S., Berendzen, J., Terwilliger, T.C.

(1998) Structure 6: 1207-1214

Released	1998-11-04
Method	X-RAY DIFFRACTION 1.75 Å
Chain ID	A
Organism	Pyrobaculum aerophilum
Macromolecule	TRANSLATION INITIATION FACTOR 5A

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1DOF: Entity 1	Download File View File

THE CRYSTAL STRUCTURE OF ADENYLOSUCCINATE LYASE FROM PYROBACULUM AEROPHILUM: INSIGHTS INTO THERMAL STABILITY AND HUMAN PATHOLOGY

Toth, E.A., Yeates, T.O., Goedken, E., Dixon, J.E., Marqusee, S.

(2000) J Mol Biol 301: 433-450

Released	2001-01-10
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	A, B, C, D
Organism	Pyrobaculum aerophilum
Macromolecule	ADENYLOSUCCINATE LYASE

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1FNN: Entity 1	Download File View File

CRYSTAL STRUCTURE OF CDC6P FROM PYROBACULUM AEROPHILUM

Liu, J., Smith, C.L., DeRyckere, D., DeAngelis, K., Martin, G.S., Berger, J.M.

(2000) Mol Cell 6: 637-648

Released	2000-10-04
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, B
Organism	Pyrobaculum aerophilum
Macromolecule	CELL DIVISION CONTROL PROTEIN 6

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1H5Y: Entity 1	Download File View File

HisF protein from Pyrobaculum aerophilum

Banfield, M.J., Lott, J.S., McCarthy, A.A., Baker, E.N.

(2001) Acta Crystallogr D Biol Crystallogr 57: 1518

Released	2001-06-01
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, B
Organism	Pyrobaculum aerophilum
Macromolecule	HISF

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1I8F: Entity 1	Download File View File

THE CRYSTAL STRUCTURE OF A HEPTAMERIC ARCHAEAL SM PROTEIN: IMPLICATIONS FOR THE EUKARYOTIC SNRNP CORE

Mura, C., Cascio, D., Sawaya, M.R., Eisenberg, D.

(2001) Proc Natl Acad Sci U S A 98: 5532-5537

Released	2001-05-16
Method	X-RAY DIFFRACTION 1.75 Å
Chain IDs	A, B, C, D, E
Organism	Pyrobaculum aerophilum
Macromolecule	PUTATIVE SNRNP SM-LIKE PROTEIN

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1IK6: Entity 1	Download File View File

3D structure of the E1beta subunit of pyruvate dehydrogenase from the archeon Pyrobaculum aerophilum

Kleiger, G., Perry, J., Eisenberg, D.

(2001) Biochemistry 40: 14484-14492

Released	2001-12-19
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Pyrobaculum aerophilum
Macromolecule	pyruvate dehydrogenase

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1JI8: Entity 1	Download File View File

Solution Structure of Pyrobaculum Aerophilum DsrC/gamma subunit of dissimilatory sulfite reductase

Cort, J.R., Kennedy, M.A., Northeast Structural Genomics Consortium (NESG)

(2001) Eur J Biochem 268: 5842-5850

Released	2001-12-05
Method	SOLUTION NMR
Chain ID	A
Organism	Pyrobaculum aerophilum
Macromolecule	dissimilatory siroheme-sulfite reductase

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1JRK: Entity 1	Download File View File

Crystal Structure of a Nudix Protein from Pyrobaculum aerophilum Reveals a Dimer with Intertwined Beta Sheets

Wang, S., Mura, C., Sawaya, M.R., Cascio, D., Eisenberg, D.

(2002) Acta Crystallogr D Biol Crystallogr 58: 571-578

Released	2002-04-03
Method	X-RAY DIFFRACTION 2.4 Å
Chain IDs	A, B, C, D
Organism	Pyrobaculum aerophilum
Macromolecule	Nudix homolog

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1K26: Entity 1	Download File View File

Structure of a Nudix Protein from Pyrobaculum aerophilum Solved by the Single Wavelength Anomolous Scattering Method

Wang, S., Mura, C., Sawaya, M.R., Cascio, D., Eisenberg, D.

(2002) Acta Crystallogr D Biol Crystallogr 58: 571-578

Released	2002-04-03
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	A, B
Organism	Pyrobaculum aerophilum
Macromolecule	NUDIX HOMOLOG

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1K2E: Entity 1	Download File View File

crystal structure of a nudix protein from Pyrobaculum aerophilum

Wang, S., Mura, C., Sawaya, M.R., Cascio, D., Eisenberg, D.

(2002) Acta Crystallogr D Biol Crystallogr 58: 571-578

Released	2002-04-03
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A, B
Organism	Pyrobaculum aerophilum
Macromolecule	NUDIX HOMOLOG

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1L5X: Entity 1	Download File View File

The 2.0-Angstrom resolution crystal structure of a survival protein E (SurE) homolog from Pyrobaculum aerophilum

Mura, C., Katz, J.E., Clarke, S.G., Eisenberg, D.

(2003) J Mol Biol 326: 1559-1575

Released	2003-02-25
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, B
Organism	Pyrobaculum aerophilum
Macromolecule	Survival protein E

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1LNX: Entity 1	Download File View File

Crystal structure of the P.aerophilum SmAP1 heptamer in a new crystal form (C2221)

Mura, C., Kozhukhovsky, A., Eisenberg, D.

(2003) Protein Sci 12: 832-847

Released	2003-03-25
Method	X-RAY DIFFRACTION 2.05 Å
Chain IDs	A, B, C, D, E
Organism	Pyrobaculum aerophilum
Macromolecule	small nuclear ribonucleoprotein homolog (Sm-like)

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1M5Q: Entity 1	Download File View File

Crystal structure of a novel Sm-like archaeal protein from Pyrobaculum aerophilum

Mura, C., Phillips, M., Kozhukhovsky, A., Eisenberg, D.

(2003) Proc Natl Acad Sci U S A 100: 4539-4544

Released	2003-03-18
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, AA [auth 1], B, BA [auth 2], C More (28)
Organism	Pyrobaculum aerophilum
Macromolecule	small nuclear ribonucleoprotein homolog

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1P7G: Entity 1	Download File View File

Crystal structure of superoxide dismutase from Pyrobaculum aerophilum

Lee, S., Sawaya, M.R., Eisenberg, D.

(2003) Acta Crystallogr D Biol Crystallogr 59: 2191-2199

Released	2003-12-02
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	C, D, F, H, I More (24)
Organism	Pyrobaculum aerophilum
Macromolecule	Superoxide dismutase

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1QP8: Entity 1	Download File View File

CRYSTAL STRUCTURE OF A PUTATIVE FORMATE DEHYDROGENASE FROM PYROBACULUM AEROPHILUM

Peat, T.S., Newman, J., Waldo, G.S., Terwilliger, T.C.

To be published

Released	1999-06-11
Method	X-RAY DIFFRACTION 2.8 Å
Chain IDs	A, B
Organism	Pyrobaculum aerophilum
Macromolecule	FORMATE DEHYDROGENASE

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1RKI: Entity 1	Download File View File

Structure of pag5_736 from P. aerophilum with three disulphide bonds

Beeby, M., Ryttersgaard, C., Boutz, D.R., Perry, L.J., Yeates, T.O.

(2005) PLoS Biol 3: e309-e309

Released	2005-01-18
Method	X-RAY DIFFRACTION 1.6 Å
Chain IDs	B, A
Organism	Pyrobaculum aerophilum
Macromolecule	hypothetical protein

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1TZB: Entity 1	Download File View File

Crystal structure of native phosphoglucose/phosphomannose isomerase from Pyrobaculum aerophilum

Swan, M.K., Hansen, T., Schoenheit, P., Davies, C.

(2004) J Biol Chem 279: 39838-39845

Released	2004-07-20
Method	X-RAY DIFFRACTION 1.16 Å
Chain IDs	A, B
Organism	Pyrobaculum aerophilum str. IM2
Macromolecule	glucose-6-phosphate isomerase, conjectural

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1TZC: Entity 1	Download File View File

Crystal structure of phosphoglucose/phosphomannose isomerase from Pyrobaculum aerophilum in complex with 5-phosphoarabinonate

Swan, M.K., Hansen, T., Schoenheit, P., Davies, C.

(2004) J Biol Chem 279: 39838-39845

Released	2004-07-20
Method	X-RAY DIFFRACTION 1.45 Å
Chain IDs	A, B
Organism	Pyrobaculum aerophilum str. IM2
Macromolecule	glucose-6-phosphate isomerase, conjectural

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1V8O: Entity 1	Download File View File

Crystal Structure of PAE2754 from Pyrobaculum aerophilum

Arcus, V.L., Backbro, K., Roos, A., Daniel, E.L., Baker, E.N.

(2004) J Biol Chem 279: 16471-16478

Released	2004-02-10
Method	X-RAY DIFFRACTION 2.8 Å
Chain IDs	A, B, C, D, E
Organism	Pyrobaculum aerophilum
Macromolecule	hypothetical protein PAE2754

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1V8P: Entity 1	Download File View File

Crystal structure of PAE2754 from Pyrobaculum aerophilum

Arcus, V.L., Backbro, K., Roos, A., Daniel, E.L., Baker, E.N.

(2004) J Biol Chem 279: 16471-16478

Released	2004-02-10
Method	X-RAY DIFFRACTION 2.52 Å
Chain IDs	A, B, C, D, E More (12)
Organism	Pyrobaculum aerophilum
Macromolecule	hypothetical protein PAE2754

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1VCV: Entity 1	Download File View File

Structure of 2-deoxyribose-5-phosphate aldolase from Pyrobaculum aerophilum

Sakuraba, H., Ohshima, T., Tsuge, H.

(2007) Appl Environ Microbiol 73: 7427-7434

Released	2005-08-02
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, B
Organism	Pyrobaculum aerophilum
Macromolecule	Probable deoxyribose-phosphate aldolase

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1W4I: Entity 1	Download File View File

Peripheral-subunit binding domains from mesophilic, thermophilic, and hyperthermophilic bacteria fold by ultrafast, apparently two-state transitions

Ferguson, N., Sharpe, T.D., Schartau, P.J., Allen, M.D., Johnson, C.M., Sato, S., Fersht, A.R.

(2005) J Mol Biol 353: 427

Released	2005-07-20
Method	SOLUTION NMR
Chain ID	A
Organism	Pyrobaculum aerophilum
Macromolecule	PYRUVATE DEHYDROGENASE E2

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1W4J: Entity 1	Download File View File

Peripheral-subunit binding domains from mesophilic, thermophilic, and hyperthermophilic bacteria fold by ultrafast, apparently two-state transitions

Ferguson, N., Sharpe, T.D., Schartau, P.J., Allen, M.D., Johnson, C.M., Sato, S., Fersht, A.R.

(2005) J Mol Biol 353: 427-446

Released	2005-07-20
Method	SOLUTION NMR
Chain ID	A
Organism	Pyrobaculum aerophilum
Macromolecule	PYRUVATE DEHYDROGENASE E2

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1W4K: Entity 1	Download File View File

Peripheral-subunit binding domains from mesophilic, thermophilic, and hyperthermophilic bacteria fold by ultrafast, apparently two-state transitions

Ferguson, N., Sharpe, T.D., Schartau, P.J., Allen, M.D., Johnson, C.M., Sato, S., Fersht, A.R.

(2005) J Mol Biol 353: 427

Released	2005-07-20
Method	SOLUTION NMR
Chain ID	A
Organism	Pyrobaculum aerophilum
Macromolecule	PYRUVATE DEHYDROGENASE E2

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1WVQ: Entity 1	Download File View File

Structure of conserved hypothetical protein PAE2307 from Pyrobaculum aerophilum

Lott, J.S., Delbaere, L.T., Banfield, M.J., Sigrell-Simon, J.A., Baker, E.N.

(2006) J Biol Chem 281: 22131-22141

Released	2006-01-10
Method	X-RAY DIFFRACTION 1.45 Å
Chain IDs	A, B, C
Organism	Pyrobaculum aerophilum
Macromolecule	hypothetical protein PAE2307

1 to 25 of 63 Polymer Entities

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