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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy ID (Full Lineage) = "53326"

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Search Summary

This query matches 29 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (29)

Scientific Name of Source Organism

	Human herpesvirus 8 strain GK18 (26)
	Human herpesvirus 8 type P (isolate GK18) (3)

Taxonomy

Duplodnaviria (29)

Experimental Method

	ELECTRON MICROSCOPY (20)
	X-RAY DIFFRACTION (8)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (29)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (3)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)
	3.5 - 4.0 (11)
	4.0 - 4.5 (7)
	> 4.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (2)
	2015 - 2019 (21)
	2020 - 2024 (4)
	2025 - 2029 (1)

Enzyme Classification Name

Hydrolases (2)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (25)
	Cyclic (4)

SCOP Classification

Alpha and beta proteins (a+b) (4)

AllSelected

1 to 25 of 29 Polymer Entities

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1HHV: Entity 1	Download File View File

SOLUTION STRUCTURE OF VIRUS CHEMOKINE VMIP-II

Shao, W., Fernandez, E., Navenot, J.M., Wilken, J., Thompson, D.A., Pepiper, S., Schweitzer, B.I., Lolis, E.

(2001) Eur J Biochem 268: 2948-2959

Released	2003-09-16
Method	SOLUTION NMR
Chain ID	A
Organism	Human herpesvirus 8 type P (isolate GK18)
Macromolecule	VIRUS CHEMOKINE VMIP-II

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2FHT: Entity 1	Download File View File

Crystal Structure of Viral Macrophage Inflammatory Protein-II

Li, Y., Liu, D., Cao, R., Kumar, S., Dong, C.Z., wilson, S.R., Gao, Y.G., Huang, Z.

(2007) Proteins 67: 243-246

Released	2006-12-26
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Human herpesvirus 8 type P (isolate GK18)
Macromolecule	Viral macrophage inflammatory protein-II

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2FJ2: Entity 1	Download File View File

Crystal Structure of Viral Macrophage Inflammatory Protein-II

Li, Y., Liu, D., Cao, R., Kumar, S., Dong, C.Z., wilson, S.R., Gao, Y.G., Huang, Z.

(2007) Proteins 67: 243-246

Released	2006-12-26
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	A, B, C, D
Organism	Human herpesvirus 8 type P (isolate GK18)
Macromolecule	Viral macrophage inflammatory protein-II

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4P55: Entity 1	Download File View File

Crystal structure of DNA binding domain of K11 from KSHV

Hu, H.D., Gao, Z.Q., Lan, K., Dong, Y.H.

To be published

Released	2015-04-15
Method	X-RAY DIFFRACTION 2.504 Å
Chain IDs	A, B
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Viral IRF2-like protein

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4RWS: Entity 2	Download File View File

Crystal structure of CXCR4 and viral chemokine antagonist vMIP-II complex (PSI Community Target)

Qin, L., Kufareva, I., Holden, L., Wang, C., Zheng, Y., Wu, H., Fenalti, G., Han, G.W., Cherezov, V., Abagyan, R., Stevens, R.C., Handel, T.M., GPCR Network (GPCR)

(2015) Science 347: 1117-1122

Released	2015-02-11
Method	X-RAY DIFFRACTION 3.1 Å
Chain ID	B [auth C]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Viral macrophage inflammatory protein 2

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6PPB: Entity 1	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C5 portal vertex structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 4.3 Å
Chain ID	A [auth k]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Capsid vertex component 1

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6PPB: Entity 2	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C5 portal vertex structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 4.3 Å
Chain IDs	B [auth l], C [auth m]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Capsid vertex component 2

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6PPB: Entity 3	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C5 portal vertex structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 4.3 Å
Chain IDs	D [auth n], E [auth o]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Large tegument protein deneddylase

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6PPB: Entity 4	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C5 portal vertex structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 4.3 Å
Chain IDs	F [auth S], G [auth T], H [auth W], I [auth X]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Major capsid protein

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6PPB: Entity 5	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C5 portal vertex structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 4.3 Å
Chain IDs	J [auth b], M [auth 5]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Triplex capsid protein 1

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6PPB: Entity 6	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C5 portal vertex structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 4.3 Å
Chain IDs	K [auth c], L [auth d], N [auth 6], O [auth 7]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Triplex capsid protein 2

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6PPB: Entity 7	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C5 portal vertex structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 4.3 Å
Chain IDs	P [auth 0], Q [auth 1], R [auth 2], S [auth 3]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Small capsomere-interacting protein

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6PPD: Entity 1	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-absent structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 3.7 Å
Chain IDs	A [auth 0], C [auth 2], F [auth 3], H [auth A], O [auth 1]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Small capsomere-interacting protein

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6PPD: Entity 2	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-absent structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 3.7 Å
Chain IDs	B [auth W], D [auth S], E [auth T], G [auth 4], P [auth X]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Major capsid protein

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6PPD: Entity 3	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-absent structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 3.7 Å
Chain IDs	I [auth 5], L [auth b]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Triplex capsid protein 1

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6PPD: Entity 4	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-absent structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 3.7 Å
Chain IDs	J [auth 6], K [auth 7], M [auth c], N [auth d]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Triplex capsid protein 2

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6PPH: Entity 1	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-binding structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 3.8 Å
Chain ID	A [auth k]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Capsid vertex component 1

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6PPH: Entity 2	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-binding structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 3.8 Å
Chain IDs	B [auth l], C [auth m]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Capsid vertex component 2

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6PPH: Entity 3	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-binding structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 3.8 Å
Chain IDs	D [auth n], E [auth o]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Large tegument protein deneddylase

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6PPH: Entity 4	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-binding structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 3.8 Å
Chain IDs	F [auth 5], I [auth b]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Triplex capsid protein 1

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6PPH: Entity 5	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-binding structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 3.8 Å
Chain IDs	G [auth 6], H [auth 7], J [auth c], K [auth d]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Triplex capsid protein 2

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6PPH: Entity 6	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-binding structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 3.8 Å
Chain IDs	L [auth 4], O [auth S], Q [auth T], S [auth X], U [auth W]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Major capsid protein

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6PPH: Entity 7	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-binding structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 3.8 Å
Chain IDs	M [auth A], N [auth 2], P [auth 3], R [auth 1], T [auth 0]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Small capsomere-interacting protein

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6PPI: Entity 1	Download File View File

Kaposi's sarcoma-associated herpesvirus (KSHV), C12 portal dodecamer structure

Gong, D., Dai, X., Jih, J., Liu, Y.T., Bi, G.Q., Sun, R., Zhou, Z.H.

(2019) Cell 178: 1329-1343.e12

Released	2019-09-11
Method	ELECTRON MICROSCOPY 4.7 Å
Chain IDs	A, B, C, D, E More (12)
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Portal protein

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7NXE: Entity 2	Download File View File

Structure of the Phospholipase C gamma 1 tSH2 domain in complex with a phosphorylated KSHV pK15 peptide

Ssebyatika, G., Krey, T.

(2021) PLoS Pathog 17: e1009635-e1009635

Released	2021-06-09
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	B [auth C], C [auth D]
Organism	Human herpesvirus 8 strain GK18
Macromolecule	Protein K15

1 to 25 of 29 Polymer Entities

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