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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy ID (Full Lineage) = "70863"

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Search Summary

This query matches 237 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (237)

Scientific Name of Source Organism

	Shewanella oneidensis MR-1 (154)
	Shewanella oneidensis (83)
	Shewanella benthica (1)

Taxonomy

Bacteria (237)

Experimental Method

	X-RAY DIFFRACTION (218)
	ELECTRON MICROSCOPY (11)
	SOLUTION NMR (8)

Polymer Entity Type

	Protein (233)
	DNA (4)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (15)
	1.5 - 2.0 (76)
	2.0 - 2.5 (76)
	2.5 - 3.0 (20)
	3.0 - 3.5 (20)
	3.5 - 4.0 (14)
	4.0 - 4.5 (4)
	> 4.5 (1)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (7)
	2005 - 2009 (50)
	2010 - 2014 (69)
	2015 - 2019 (34)
	2020 - 2024 (51)
	2025 - 2029 (23)

Enzyme Classification Name

	Oxidoreductases (39)
	Transferases (23)
	Hydrolases (15)
	Isomerases (3)
	Lyases (2)
	Translocases (1)

Membrane Protein Annotation

	PDBTM (19)
	OPM (18)
	MemProtMD (11)
	mpstruc (8)

Symmetry Type

	Cyclic (156)
	Asymmetric (86)
	Dihedral (32)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (37)
	All alpha proteins (17)
	All beta proteins (9)
	Alpha and beta proteins (a+b) (17)
	Artifacts (24)
	Membrane and cell surface proteins and peptides (2)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 237 Polymer Entities

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1D4C: Entity 1	Download File View File

CRYSTAL STRUCTURE OF THE UNCOMPLEXED FORM OF THE FLAVOCYTOCHROME C FUMARATE REDUCTASE OF SHEWANELLA PUTREFACIENS STRAIN MR-1

Leys, D., Tsapin, A.S., Meyer, T.E., Cusanovich, M.A., Van Beeumen, J.J.

(1999) Nat Struct Biol 6: 1113-1117

Released	1999-12-01
Method	X-RAY DIFFRACTION 2.9 Å
Chain IDs	A, B, C, D
Organism	Shewanella oneidensis
Macromolecule	FLAVOCYTOCHROME C FUMARATE REDUCTASE

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1D4D: Entity 1	Download File View File

CRYSTAL STRUCTURE OF THE SUCCINATE COMPLEXED FORM OF THE FLAVOCYTOCHROME C FUMARATE REDUCTASE OF SHEWANELLA PUTREFACIENS STRAIN MR-1

Leys, D., Tsapin, A.S., Meyer, T.E., Cusanovich, M.A., Van Beeumen, J.J.

(1999) Nat Struct Biol 6: 1113-1117

Released	1999-12-01
Method	X-RAY DIFFRACTION 2.5 Å
Chain ID	A
Organism	Shewanella oneidensis
Macromolecule	FLAVOCYTOCHROME C FUMARATE REDUCTASE

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1D4E: Entity 1	Download File View File

CRYSTAL STRUCTURE OF THE FLAVOCYTOCHROME C FUMARATE REDUCTASE OF SHEWANELLA PUTREFACIENS STRAIN MR-1 COMPLEXED WITH FUMARATE

Leys, D., Tsapin, A.S., Meyer, T.E., Cusanovich, M.A., Van Beeumen, J.J.

(1999) Nat Struct Biol 6: 1113-1117

Released	1999-12-01
Method	X-RAY DIFFRACTION 2.8 Å
Chain ID	A
Organism	Shewanella oneidensis
Macromolecule	FLAVOCYTOCHROME C FUMARATE REDUCTASE

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1M1P: Entity 1	Download File View File

P21 crystal structure of the tetraheme cytochrome c3 from Shewanella oneidensis MR1

Leys, D., Meyer, T.E., Tsapin, A.I., Nealson, K.H., Cusanovich, M.A., Van Beeumen, J.J.

(2002) J Biological Chem 277: 35703-35711

Released	2002-08-14
Method	X-RAY DIFFRACTION 1.55 Å
Chain IDs	A, B, C, D, E
Organism	Shewanella oneidensis
Macromolecule	Small tetraheme cytochrome c

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1M1Q: Entity 1	Download File View File

P222 oxidized structure of the tetraheme cytochrome c from Shewanella oneidensis MR1

Leys, D., Meyer, T.E., Tsapin, A.I., Nealson, K.H., Cusanovich, M.A., Van Beeumen, J.J.

(2002) J Biological Chem 277: 35703-35711

Released	2002-08-14
Method	X-RAY DIFFRACTION 0.97 Å
Chain ID	A
Organism	Shewanella oneidensis MR-1
Macromolecule	small tetraheme cytochrome c

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1M1R: Entity 1	Download File View File

Reduced p222 crystal structure of the tetraheme cytochrome c of Shewanella oneidensis MR1

Leys, D., Meyer, T.E., Tsapin, A.I., Nealson, K.H., Cusanovich, M.A., Van Beeumen, J.J.

(2002) J Biological Chem 277: 35703-35711

Released	2002-08-14
Method	X-RAY DIFFRACTION 1.02 Å
Chain ID	A
Organism	Shewanella oneidensis
Macromolecule	SMALL tetraheme cytochrome c

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1SP3: Entity 1	Download File View File

Crystal structure of octaheme cytochrome c from Shewanella oneidensis

Mowat, C.G., Rothery, E., Miles, C.S., McIver, L., Doherty, M.K., Drewette, K., Taylor, P., Walkinshaw, M.D., Chapman, S.K., Reid, G.A.

(2004) Nat Struct Mol Biol 11: 1023-1024

Released	2004-09-21
Method	X-RAY DIFFRACTION 2.2 Å
Chain ID	A
Organism	Shewanella oneidensis MR-1
Macromolecule	cytochrome c, putative

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1T0A: Entity 1	Download File View File

Crystal Structure of 2C-Methyl-D-Erythritol-2,4-cyclodiphosphate Synthase from Shewanella Oneidensis

Ni, S., Robinson, H., Marsing, G.C., Bussiere, D.E., Kennedy, M.A.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1949-1957

Released	2004-10-26
Method	X-RAY DIFFRACTION 1.6 Å
Chain IDs	A, B, C
Organism	Shewanella oneidensis MR-1
Macromolecule	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

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1T82: Entity 1	Download File View File

Crystal Structure of the putative thioesterase from Shewanella oneidensis, Northeast Structural Genomics Target SoR51

Forouhar, F., Lee, I., Vorobiev, S.M., Xiao, R., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2004-05-18
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	A, B, C, D
Organism	Shewanella oneidensis MR-1
Macromolecule	hypothetical acetyltransferase

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1TZA: Entity 1	Download File View File

X-ray structure of Northeast Structural Genomics Consortium target SoR45

Kuzin, A.P., Vorobiev, S.M., Edstrom, W., Acton, T.B., Shastry, R., Ma, L.-C., Cooper, B., Xiao, R., Montelione, G., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2004-07-27
Method	X-RAY DIFFRACTION 2.4 Å
Chain IDs	A, B
Organism	Shewanella oneidensis MR-1
Macromolecule	apaG protein

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1YUD: Entity 1	Download File View File

X-ray Crystal Structure of Protein SO0799 from Shewanella oneidensis. Northeast Structural Genomics Consortium Target SoR12.

Kuzin, A.P., Vorobiev, S., Chen, Y., Forouhar, F., Acton, T., Ma, L.-C., Xiao, R., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2005-03-08
Method	X-RAY DIFFRACTION 2.7 Å
Chain IDs	D, F, I, A, B More (10)
Organism	Shewanella oneidensis MR-1
Macromolecule	hypothetical protein SO0799

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1ZEE: Entity 1	Download File View File

X-Ray Crystal Structure of Protein SO4414 from Shewanella oneidensis. Northeast Structural Genomics Consortium Target SoR52.

Forouhar, F., Abashidze, M., Vorobiev, S.M., Conover, K., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2005-05-03
Method	X-RAY DIFFRACTION 2.31 Å
Chain IDs	A, B
Organism	Shewanella oneidensis MR-1
Macromolecule	hypothetical protein SO4414

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2A5Z: Entity 1	Download File View File

Crystal Structure of Protein of Unknown Function SO2946 from Shewanella oneidensis MR-1

Nocek, B., Bigelow, L., Abdullah, J., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2008) J Struct Funct Genomics 9: 1-6

Released	2005-08-16
Method	X-RAY DIFFRACTION 2.015 Å
Chain IDs	A, B, C
Organism	Shewanella oneidensis MR-1
Macromolecule	hypothetical protein SO2946

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2BBE: Entity 1	Download File View File

Crystal structure of protein SO0527 from Shewanella oneidensis

Chang, C., Bigelow, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-11-29
Method	X-RAY DIFFRACTION 1.97 Å
Chain ID	A
Organism	Shewanella oneidensis MR-1
Macromolecule	hypothetical protein SO0527

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2E4L: Entity 1	Download File View File

Thermodynamic and Structural Analysis of Thermolabile RNase HI from Shewanella oneidensis MR-1

Tadokoro, T., You, D.J., Chon, H., Matsumura, H., Koga, Y., Takano, K., Kanaya, S.

(2007) Biochemistry 46: 7460-7468

Released	2007-05-01
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Shewanella oneidensis MR-1
Macromolecule	Ribonuclease HI

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2F7W: Entity 1	Download File View File

Crystal structure of Molybdenum cofactor biosynthesis protein Mog from Shewanella oneidensis

Chang, C., Mulligan, R., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2006-01-17
Method	X-RAY DIFFRACTION 1.9 Å
Chain IDs	A, B, C
Organism	Shewanella oneidensis
Macromolecule	molybdenum cofactor biosynthesis protein Mog

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2F7Y: Entity 1	Download File View File

Crystal structure of Molybdenum cofactor biosynthesis protein Mog from Shewanella oneidensis

Chang, C., Mulligan, R., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2006-01-17
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	A, B, C
Organism	Shewanella oneidensis
Macromolecule	molybdenum cofactor biosynthesis protein Mog

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2GOU: Entity 1	Download File View File

Structure of wild type, oxidized SYE1, an OYE homologue from S. oneidensis

Savvides, S.N., van den Hemel, D.

(2006) J Biological Chem 281: 28152-28161

Released	2006-07-25
Method	X-RAY DIFFRACTION 1.4 Å
Chain ID	A
Organism	Shewanella oneidensis
Macromolecule	oxidoreductase, FMN-binding

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2GP4: Entity 1	Download File View File

Structure of [FeS]cluster-free Apo Form of 6-Phosphogluconate Dehydratase from Shewanella oneidensis

Schormann, N., Symersky, J., Southeast Collaboratory for Structural Genomics (SECSG)

To be published

Released	2006-05-09
Method	X-RAY DIFFRACTION 2.49 Å
Chain IDs	A, B
Organism	Shewanella oneidensis MR-1
Macromolecule	6-phosphogluconate dehydratase

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2GQ8: Entity 1	Download File View File

Structure of SYE1, an OYE homologue from S. ondeidensis, in complex with p-hydroxyacetophenone

Savvides, S.N., van den Hemel, D.

(2006) J Biological Chem 281: 28152-28161

Released	2006-07-25
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Shewanella oneidensis MR-1
Macromolecule	oxidoreductase, FMN-binding

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2GQ9: Entity 1	Download File View File

Structure of SYE1, an OYE homologue from S. oneidensis, in complex with p-hydroxybenzaldehyde

Savvides, S.N., van den Hemel, D.

(2006) J Biological Chem 281: 28152-28161

Released	2006-07-25
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Shewanella oneidensis MR-1
Macromolecule	oxidoreductase, FMN-binding

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2GQA: Entity 1	Download File View File

Structure of NADH-reduced SYE1, an OYE homologue from S. oneidensis

Savvides, S.N., van den Hemel, D.

(2006) J Biological Chem 281: 28152-28161

Released	2006-07-25
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Shewanella oneidensis MR-1
Macromolecule	oxidoreductase, FMN-binding

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2GZO: Entity 1	Download File View File

NMR structure of UPF0301 PROTEIN SO3346 from Shewanella oneidensis: Northeast Structural Genomics Consortium target SOR39

Singarapu, K.K., Liu, G., Eletsky, A., Xu, D., Sukumaran, D.K., Mei, J., Xiao, R., Cunningham, K., Ma, L.C., Ritu, S., Acton, T.B., Rost, B., Montelione, G.T., Szyperski, T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-06-20
Method	SOLUTION NMR
Chain ID	A
Organism	Shewanella oneidensis
Macromolecule	UPF0301 protein SO3346

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2HAG: Entity 1	Download File View File

Crystal structure of a putative dyp-type peroxidase protein (so_0740) from shewanella oneidensis at 2.75 A resolution

Joint Center for Structural Genomics (JCSG)

(2007) Proteins 69: 223-233

Released	2006-08-08
Method	X-RAY DIFFRACTION 2.75 Å
Chain ID	A
Organism	Shewanella oneidensis
Macromolecule	Melanin biosynthesis protein TyrA, putative

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2IIU: Entity 1	Download File View File

Crystal structure of a putative PhoU-like phosphate regulatory protein (NP_719307.1) from Shewanella oneidensis MR-1 at 2.28 A resolution.

Joint Center for Structural Genomics (JCSG)

To be published

Released	2006-10-17
Method	X-RAY DIFFRACTION 2.28 Å
Chain IDs	A, B, C
Organism	Shewanella oneidensis
Macromolecule	Hypothetical protein

1 to 25 of 237 Polymer Entities

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