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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy ID (Full Lineage) = "85962"

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Search Summary

This query matches 302 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (302)

Scientific Name of Source Organism

	Helicobacter pylori 26695 (296)
	Helicobacter pylori (strain ATCC 700392 / 26695) (6)
	Streptococcus sp. 'group G (1)
	synthetic construct (1)

Taxonomy

	Bacteria (302)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (278)
	SOLUTION NMR (16)
	ELECTRON MICROSCOPY (8)

Polymer Entity Type

	Protein (298)
	DNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (17)
	1.5 - 2.0 (71)
	2.0 - 2.5 (110)
	2.5 - 3.0 (64)
	3.0 - 3.5 (15)
	3.5 - 4.0 (9)

Release Date

	2000 - 2004 (11)
	2005 - 2009 (42)
	2010 - 2014 (99)
	2015 - 2019 (105)
	2020 - 2024 (45)

Enzyme Classification Name

	Transferases (60)
	Hydrolases (30)
	Lyases (21)
	Ligases (17)
	Oxidoreductases (16)
	Isomerases (4)

Membrane Protein Annotation

mpstruc (2)

Symmetry Type

	Cyclic (161)
	Asymmetric (115)
	Dihedral (40)
	Tetrahedral (5)

SCOP Classification

	Alpha and beta proteins (a/b) (74)
	Alpha and beta proteins (a+b) (23)
	All beta proteins (11)
	All alpha proteins (17)
	Artifacts (15)
	Peptides (6)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 302 Polymer Entities

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1NLY: Entity 1	Download File View File

Crystal structure of the traffic ATPase of the Helicobacter pylori type IV secretion system in complex with ATPgammaS

Savvides, S.N., Yeo, H.J., Beck, M.R., Blaesing, F., Lurz, R., Lanka, E., Buhrdorf, R., Fischer, W., Haas, R., Waksman, G.

(2003) EMBO J 22: 1969-1980

Released	2003-05-06
Method	X-RAY DIFFRACTION 2.8 Å
Chain IDs	A, B
Organism	Helicobacter pylori 26695
Macromolecule	virB11 homolog

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1NLZ: Entity 1	Download File View File

Crystal structure of unliganded traffic ATPase of the type IV secretion system of helicobacter pylori

Savvides, S.N., Yeo, H.J., Beck, M.R., Blaesing, F., Lurz, R., Lanka, E., Buhrdorf, R., Fischer, W., Haas, R., Waksman, G.

(2003) EMBO J 22: 1969-1980

Released	2003-05-06
Method	X-RAY DIFFRACTION 3 Å
Chain IDs	A, B, C, D, E
Organism	Helicobacter pylori 26695
Macromolecule	virB11 homolog

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1OPX: Entity 1	Download File View File

Crystal structure of the traffic ATPase (HP0525) of the Helicobacter pylori type IV secretion system bound by sulfate

Savvides, S.N., Yeo, H.J., Beck, M.R., Blaesing, F., Lurz, R., Lanka, E., Buhrdorf, R., Fischer, W., Haas, R., Waksman, G.

(2003) EMBO J 22: 1969-1980

Released	2003-05-06
Method	X-RAY DIFFRACTION 2.8 Å
Chain IDs	A, B
Organism	Helicobacter pylori 26695
Macromolecule	virB11 homolog

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1OUV: Entity 1	Download File View File

Helicobacter cysteine rich protein C (HcpC)

Mittl, P.R., Luethy, L.

(2004) J Mol Biol 340: 829-841

Released	2004-03-30
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Helicobacter pylori 26695
Macromolecule	conserved hypothetical secreted protein

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1P0G: Entity 1	Download File View File

Structure of Antimicrobial Peptide, HP (2-20) and its Analogues Derived from Helicobacter pylori, as Determined by 1H NMR Spectroscopy

Lee, K.H., Lee, D.G., Park, Y.K., Harm, K.S., Kim, Y.M.

To be published

Released	2003-05-20
Method	SOLUTION NMR
Chain ID	A
Organism	Helicobacter pylori (strain ATCC 700392 / 26695)
Macromolecule	19-mer peptide from 50S ribosomal protein L1

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1P0J: Entity 1	Download File View File

HP (2-20) Substitution ASP To TRP Modification In SDS-D25 Micelles

Lee, K.H., Lee, D.G., Park, Y.K., Harm, K.S., Kim, Y.M.

To be published

Released	2003-05-20
Method	SOLUTION NMR
Chain ID	A
Organism	Helicobacter pylori (strain ATCC 700392 / 26695)
Macromolecule	19-mer peptide from 50S ribosomal protein L1

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1P0L: Entity 1	Download File View File

HP (2-20) Substitution GLN To TRP Modification In SDS-D25 MICELLES

Lee, K.H., Lee, D.G., Park, Y.K., Harm, K.S., Kim, Y.M.

To be published

Released	2003-05-20
Method	SOLUTION NMR
Chain ID	A
Organism	Helicobacter pylori (strain ATCC 700392 / 26695)
Macromolecule	19-mer peptide from 50S ribosomal protein L1

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1P0O: Entity 1	Download File View File

HP (2-20) substitution of Trp for Gln and Asp at position 17 and 19 MODIFICATION IN SDS-D25 MICELLES

Lee, K.H., Lee, D.G., Park, Y.K., Harm, K.S., Kim, Y.M.

To be published

Released	2003-05-20
Method	SOLUTION NMR
Chain ID	A
Organism	Helicobacter pylori (strain ATCC 700392 / 26695)
Macromolecule	19-mer peptide from 50S ribosomal protein L1

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1P5K: Entity 1	Download File View File

HP (2-20) Substitution SER to LEU11 modification in sds-d25 micelles

Lee, K.H., Lee, D.G., Park, Y.K., Harm, K.S., Kim, Y.M.

To be published

Released	2003-06-03
Method	SOLUTION NMR
Chain ID	A
Organism	Helicobacter pylori (strain ATCC 700392 / 26695)
Macromolecule	19-mer peptide from 50S ribosomal protein L1

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1P5L: Entity 1	Download File View File

HP (2-20) Substitution PHE5 to SER modification in sds-d25 micelles

Lee, K.H., Lee, D.G., Park, Y.K., Harm, K.S., Kim, Y.M.

To be published

Released	2003-06-03
Method	SOLUTION NMR
Chain ID	A
Organism	Helicobacter pylori (strain ATCC 700392 / 26695)
Macromolecule	19-mer peptide from 50S ribosomal protein L1

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1UM8: Entity 1	Download File View File

Crystal structure of helicobacter pylori ClpX

Kim, D.Y., Kim, K.K.

(2003) J Biol Chem 278: 50664-50670

Released	2003-12-23
Method	X-RAY DIFFRACTION 2.6 Å
Chain ID	A
Organism	Helicobacter pylori 26695
Macromolecule	ATP-dependent Clp protease ATP-binding subunit clpX

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1X93: Entity 1	Download File View File

NMR Structure of Helicobacter pylori HP0222

Popescu, A., Karpay, A., Israel, D., Peek Jr., R.M., Krezel, A.M.

(2005) Proteins 59: 303-311

Released	2005-03-22
Method	SOLUTION NMR
Chain IDs	A, B
Organism	Helicobacter pylori 26695
Macromolecule	hypothetical protein HP0222

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1YG0: Entity 1	Download File View File

Solution structure of apo-CopP from Helicobacter pylori

Lee, B.J., Park, S.J.

To be published

Released	2006-01-24
Method	SOLUTION NMR
Chain ID	A
Organism	Helicobacter pylori 26695
Macromolecule	COP associated protein

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1YGZ: Entity 1	Download File View File

Crystal Structure of Inorganic Pyrophosphatase from Helicobacter pylori

Wu, C.A., Lokanath, N.K., Kim, D.Y., Park, H.J., Hwang, H.Y., Kim, S.T., Suh, S.W., Kim, K.K.

(2005) Acta Crystallogr D Biol Crystallogr 61: 1459-1464

Released	2005-11-01
Method	X-RAY DIFFRACTION 2.6 Å
Chain IDs	A, B, C, D, E
Organism	Helicobacter pylori 26695
Macromolecule	Inorganic pyrophosphatase

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1Z8M: Entity 1	Download File View File

Solution structure of the conserved hypothtical protein HP0894 from Helicobacter pylori

Han, K.D., Park, S.J., Jang, S.B., Lee, B.J.

(2005) Proteins 61: 1114-1116

Released	2005-11-01
Method	SOLUTION NMR
Chain ID	A
Organism	Helicobacter pylori 26695
Macromolecule	conserved hypothetical protein HP0894

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1ZHC: Entity 1	Download File View File

Solution structure of HP1242 from Helicobacter pylori

Kang, S.J., Park, S.J., Jung, S.J., Lee, B.J.

(2005) Proteins 61: 1111-1113

Released	2005-12-06
Method	SOLUTION NMR
Chain ID	A
Organism	Helicobacter pylori 26695
Macromolecule	hypothetical protein HP1242

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1ZKE: Entity 1	Download File View File

1.6 A Crystal Structure of a Protein HP1531 of Unknown Function from Helicobacter pylori

Zhang, R., Skarina, T., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.6 Å
Chain IDs	A, B, C, D, E
Organism	Helicobacter pylori 26695
Macromolecule	Hypothetical protein HP1531

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1ZUH: Entity 1	Download File View File

Structural Basis for Shikimate-binding Specificity of Helicobacter pylori Shikimate Kinase

Cheng, W.C., Chang, Y.N., Wang, W.C.

(2005) J Bacteriol 187: 8156-8163

Released	2006-05-31
Method	X-RAY DIFFRACTION 1.8 Å
Chain ID	A
Organism	Helicobacter pylori 26695
Macromolecule	Shikimate kinase

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1ZUI: Entity 1	Download File View File

Structural Basis for Shikimate-binding Specificity of Helicobacter pylori Shikimate Kinase

Cheng, W.C., Chang, Y.N., Wang, W.C.

(2005) J Bacteriol 187: 8156-8163

Released	2006-05-31
Method	X-RAY DIFFRACTION 2.3 Å
Chain ID	A
Organism	Helicobacter pylori 26695
Macromolecule	Shikimate kinase

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2ATZ: Entity 1	Download File View File

Crystal structure of protein HP0184 from Helicobacter pylori

Chang, C., Xu, X., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-10-11
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Helicobacter pylori 26695
Macromolecule	H. pylori predicted coding region HP0184

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2BQX: Entity 1	Download File View File

Inorganic Pyrophosphatase from the Pathogenic Bacterium Helicobacter pylori-Kinetic and Structural Properties

Chao, T.-C., Sun, Y.-J.

(2006) Proteins 65: 670

Released	2006-10-18
Method	X-RAY DIFFRACTION 1.9 Å
Chain ID	A
Organism	Helicobacter pylori 26695
Macromolecule	INORGANIC PYROPHOSPHATASE

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2BQY: Entity 1	Download File View File

Inorganic Pyrophosphatase from the Pathogenic Bacterium Helicobacter pylori-Kinetic and Structural Properties

Chao, T.-C., Sun, Y.-J.

(2006) Proteins 65: 670

Released	2006-10-18
Method	X-RAY DIFFRACTION 2.3 Å
Chain ID	A
Organism	Helicobacter pylori 26695
Macromolecule	INORGANIC PYROPHOSPHATASE

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2CA9: Entity 1	Download File View File

apo-NIKR from helicobacter pylori in closed trans-conformation

Dian, C., Schauer, K., Kapp, U., McSweeney, S.M., Labigne, A., Terradot, L.

(2006) J Mol Biol 361: 715

Released	2006-07-17
Method	X-RAY DIFFRACTION 2.05 Å
Chain IDs	A, B
Organism	Helicobacter pylori 26695
Macromolecule	PUTATIVE NICKEL-RESPONSIVE REGULATOR

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2CAD: Entity 1	Download File View File

NikR from Helicobacter pylori in closed trans-conformation and nickel bound to 2F, 2X and 2I sites.

Dian, C., Schauer, K., Kapp, U., McSweeney, S.M., Labigne, A., Terradot, L.

(2006) J Mol Biol 361: 715

Released	2006-07-17
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	A, B
Organism	Helicobacter pylori 26695
Macromolecule	PUTATIVE NICKEL-RESPONSIVE REGULATOR

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2CAJ: Entity 1	Download File View File

NikR from Helicobacter pylori in closed trans-conformation and nickel bound to 4 intermediary sites

Dian, C., Schauer, K., Kapp, U., McSweeney, S.M., Labigne, A., Terradot, L.

(2006) J Mol Biol 361: 715

Released	2006-07-17
Method	X-RAY DIFFRACTION 2.35 Å
Chain IDs	A, B
Organism	Helicobacter pylori 26695
Macromolecule	PUTATIVE NICKEL-RESPONSIVE REGULATOR

1 to 25 of 302 Polymer Entities

Page 1 of 13

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