RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Source Organism Taxonomy Name (Full Lineage) = "Leishmania mexicana"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (9)
	Shigella flexneri (4)
	Salmonella enterica subsp. enterica serovar Typhimurium (2)
	Halobacterium salinarum (1)
	Shigella flexneri 5a str. M90T (1)

Taxonomy

	Bacteria (16)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (14)
	ELECTRON MICROSCOPY (2)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (7)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)
	3.5 - 4.0 (2)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (2)
	2010 - 2014 (8)
	2015 - 2019 (3)
	2020 - 2024 (3)

Enzyme Classification Name

Translocases (3)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (15)
	Cyclic (1)
	Helical (1)

SCOP Classification

	All alpha proteins (4)
	Artifacts (3)
	Membrane and cell surface proteins and peptides (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 17 of 17 Structures

Page 1 of 1

Sort by

Explore in 3D

1E12	Download File View File

Halorhodopsin, a light-driven chloride pump

Essen, L.-O., Kolbe, M., Oesterhelt, D.

(2000) Science 288: 1390

Released	2000-06-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Halobacterium salinarum
Macromolecule	HALORHODOPSIN (protein)
Unique Ligands	CL, K, OLC, PLM, RET

Explore in 3D

2KV7	Download File View File

NMR solution structure of a soluble PrgI mutant from Salmonella Typhimurium

Schmidt, H., Poyraz, O., Seidel, K., Delissen, F., Ader, C., Tenenboim, H., Goosmann, C., Laube, B., Thuenemann, A.F., Zychlinski, A., Baldus, M., Lange, A., Griesinger, C., Kolbe, M.

(2010) Nat Struct Mol Biol 17: 788-792

Released	2010-06-16
Method	SOLUTION NMR
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Macromolecule	Protein prgI (protein)

Explore in 3D

2X9C	Download File View File

Crystal structure of a soluble PrgI mutant from Salmonella Typhimurium

Poyraz, O., Schmidt, H., Seidel, K., Delissen, F., Ader, C., Tenenboim, H., Goosmann, C., Laube, B., Thuenemann, A.F., Zychlinsky, A., Baldus, M., Lange, A., Griesinger, C., Kolbe, M.

(2010) Nat Struct Mol Biol 17: 788

Released	2010-06-16
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Macromolecule	PROTEIN PRGI (protein)

Explore in 3D

2YM0	Download File View File

Truncated SipD from Salmonella typhimurium

Lunelli, M., Kolbe, M.

(2011) PLoS Pathog 7: e1002163-e1002163

Released	2011-08-17
Method	X-RAY DIFFRACTION 3 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Macromolecule	CELL INVASION PROTEIN SIPD (protein)
Unique Ligands	GOL

Explore in 3D

2YM9	Download File View File

SipD from Salmonella typhimurium

Lunelli, M., Kolbe, M.

(2011) PLoS Pathog 7: 02163

Released	2011-08-17
Method	X-RAY DIFFRACTION 3 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Macromolecule	CELL INVASION PROTEIN SIPD (protein)
Unique Ligands	GOL, SO4

Explore in 3D

3GYZ	Download File View File

Crystal structure of IpgC from Shigella flexneri

Lunelli, M., Lokareddy, R.K., Zychlinsky, A., Kolbe, M.

(2009) Proc Natl Acad Sci U S A 106: 9661-9666

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Shigella flexneri
Macromolecule	Chaperone protein ipgC (protein)
Unique Ligands	GOL, NA, SO4

Explore in 3D

3GZ1	Download File View File

Crystal structure of IpgC in complex with the chaperone binding region of IpaB

Lunelli, M., Lokareddy, R.K., Zychlinsky, A., Kolbe, M.

(2009) Proc Natl Acad Sci U S A 106: 9661-9666

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Shigella flexneri
Macromolecule	Chaperone protein ipgC (protein) Invasin ipaB (protein)
Unique Ligands	GOL

Explore in 3D

3GZ2	Download File View File

Crystal structure of IpgC in complex with an IpaB peptide

Lokareddy, R.K., Lunelli, M., Kolbe, M.

(2010) J Biol Chem 285: 39965-39975

Released	2010-04-21
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Shigella flexneri
Macromolecule	Chaperone protein ipgC (protein) Invasin ipaB (protein)
Unique Ligands	GOL, IMD

Explore in 3D

3ZQB	Download File View File

PrgI-SipD from Salmonella typhimurium

Lunelli, M., Kolbe, M.

(2011) PLoS Pathog 7: 02163

Released	2011-08-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Macromolecule	PROTEIN PRGI, CELL INVASION PROTEIN SIPD (protein)
Unique Ligands	GOL

Explore in 3D

3ZQE	Download File View File

PrgI-SipD from Salmonella typhimurium in complex with deoxycholate

Lunelli, M., Kolbe, M.

(2011) PLoS Pathog 7: 02163

Released	2011-08-17
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Macromolecule	PROTEIN PRGI, CELL INVASION PROTEIN SIPD (protein)
Unique Ligands	DXC, GOL

Explore in 3D

4A4Y	Download File View File

Structure of the Cytosolic Domain of the Shigella T3SS component MxiG

Barison, N., Kolbe, M.

(2012) FASEB J 26: 1717

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Shigella flexneri
Macromolecule	PROTEIN MXIG (protein)
Unique Ligands	GOL

Explore in 3D

6RAD	Download File View File

Salmonella ATPase InvC with ADP

Bernal, I., Roemermann, J., Flacht, L., Lunelli, M., Uetrecht, C., Kolbe, M.

(2019) Protein Sci 28: 1888-1901

Released	2019-08-21
Method	X-RAY DIFFRACTION 2.796 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Macromolecule	Secretory apparatus ATP synthase (Associated with virulence) (protein)
Unique Ligands	ADP, GOL, MES, SO4

Explore in 3D

6RAE	Download File View File

Structural analysis of the Salmonella type III secretion system ATPase InvC

Bernal, I., Roemermann, J., Flacht, L., Lunelli, M., Uetrecht, C., Kolbe, M.

(2019) Protein Sci 28: 1888-1901

Released	2019-08-21
Method	X-RAY DIFFRACTION 2.049 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Macromolecule	Secretory apparatus ATP synthase (Associated with virulence) (protein)
Unique Ligands	CL, GOL

Explore in 3D

6RGV	Download File View File

Truncated FljB phase 2 flagellin

Lunelli, M., Lokareddy, R.K., Kolbe, M.

(2020) Nat Commun 11: 2013-2013

Released	2020-03-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Macromolecule	Flagellin (protein)

Explore in 3D

6SDX	Download File View File

Salmonella ATPase InvC with ATP gamma S

Bernal, I., Roemermann, J., Flacht, L., Lunelli, M., Uetrecht, C., Kolbe, M.

(2019) Protein Sci 28: 1888-1901

Released	2019-08-21
Method	X-RAY DIFFRACTION 2.645 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	ATP synthase (protein)
Unique Ligands	AGS, GOL, MG

Explore in 3D

6ZNH	Download File View File

Structure of the Salmonella PrgI needle filament attached to the basal body

Lunelli, M., Kotov, V., Wald, J., Kolbe, M., Marlovits, T.C.

(2021) Biochem Biophys Rep 27: 101039-101039

Released	2021-07-07
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	PrgI (protein)

Explore in 3D

6ZNI	Download File View File

Structure of the Shigella MxiH needle filament attached to the basal body

Lunelli, M., Kotov, V., Marlovits, T.C., Kolbe, M.

(2021) Biochem Biophys Rep 27: 101039-101039

Released	2021-07-07
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Shigella flexneri 5a str. M90T
Macromolecule	Protein MxiH (protein)

1 to 17 of 17 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification