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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Plasmodium falciparum 3D7"

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Search Summary

This query matches 583 Structures.

Refinements

Structure Determination Methodology

experimental (583)

Scientific Name of Source Organism

	Plasmodium falciparum 3D7 (583)
	Homo sapiens (52)
	Mus musculus (20)
	Gallus gallus (8)
	Vicugna pacos (5)
	synthetic construct (5)
	Escherichia coli (3)
	Plasmodium falciparum (3)
	Aequorea victoria (2)
	Orectolobus maculatus (2)

More...

Taxonomy

	Eukaryota (583)
	Bacteria (6)
	other sequences (5)
	Eukaryota (eukaryotes) (3)

Experimental Method

	X-RAY DIFFRACTION (515)
	ELECTRON MICROSCOPY (51)
	SOLUTION NMR (17)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (583)
	RNA (9)
	DNA (5)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (20)
	1.5 - 2.0 (153)
	2.0 - 2.5 (187)
	2.5 - 3.0 (105)
	3.0 - 3.5 (68)
	3.5 - 4.0 (21)
	4.0 - 4.5 (6)
	> 4.5 (5)

Release Date

	2000 - 2004 (10)
	2005 - 2009 (86)
	2010 - 2014 (126)
	2015 - 2019 (132)
	2020 - 2024 (213)
	2025 - 2029 (16)

Enzyme Classification Name

	Hydrolases (116)
	Transferases (87)
	Oxidoreductases (84)
	Ligases (50)
	Isomerases (14)
	Lyases (14)
	Translocases (5)

Membrane Protein Annotation

	OPM (16)
	PDBTM (16)
	mpstruc (15)
	MemProtMD (11)

Symmetry Type

	Asymmetric (370)
	Cyclic (192)
	Dihedral (43)
	Helical (2)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (139)
	Alpha and beta proteins (a+b) (47)
	Artifacts (54)
	All beta proteins (36)
	All alpha proteins (18)

AllSelected

1 to 25 of 583 Structures

Page 1 of 24

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1IUE \| pdb_00001iue	Download File View File

Crystal Structure Analysis of ferredoxin from Plasmodium falciparum

Kimata-Ariga, Y., Kurisu, G., Hase, T.

To be published

Released	2003-09-30
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	FERREDOXIN (protein)
Unique Ligands	FES, NA

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1N81 \| pdb_00001n81	Download File View File

Crystal structure of Pfg27 from Plasmodium falciparum

Sharma, A., Sharma, I., Kogkasuriyachai, D., Kumar, N.

(2003) Nat Struct Biol 10: 197-203

Released	2003-03-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	plasmodium falciparum gamete antigen 27/25 (protein)

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1NW4 \| pdb_00001nw4	Download File View File

Crystal Structure of Plasmodium falciparum Purine Nucleoside Phosphorylase in complex with ImmH and Sulfate

Shi, W., Ting, L.M., Kicska, G.A., Lewandowicz, A., Tyler, P.C., Evans, G.B., Furneaux, R.H., Kim, K., Almo, S.C., Schramm, V.L.

(2004) J Biological Chem 279: 18103-18106

Released	2004-03-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	uridine phosphorylase, putative (protein)
Unique Ligands	IMH, IPA, SO4

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1Q1G \| pdb_00001q1g	Download File View File

Crystal structure of Plasmodium falciparum PNP with 5'-methylthio-immucillin-H

Shi, W., Ting, L.M., Kicska, G.A., Lewandowicz, A., Tyler, P.C., Evans, G.B., Furneaux, R.H., Kim, K., Almo, S.C., Schramm, V.L.

(2004) J Biological Chem 279: 18103-18106

Released	2004-03-16
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Uridine phosphorylase putative (protein)
Unique Ligands	IPA, MTI, SO4

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1RL4 \| pdb_00001rl4	Download File View File

Plasmodium falciparum peptide deformylase complex with inhibitor

Robien, M.A., Nguyen, K.T., Kumar, A., Hirsh, I., Turley, S., Pei, D., Hol, W.G.J.

(2004) Protein Sci 13: 1155-1163

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	formylmethionine deformylase (protein)
Unique Ligands	BL5, BRR, CO

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1SQ6 \| pdb_00001sq6	Download File View File

Plasmodium falciparum homolog of Uridine phosphorylase/Purine nucleoside phosphorylase

Robien, M.A., Hol, W.G.J., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

(2005) Acta Crystallogr D Biol Crystallogr 61: 1245-1254

Released	2004-04-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	uridine phosphorylase, putative (protein)
Unique Ligands	SO4

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1SYR \| pdb_00001syr	Download File View File

Initial Structural Analysis of Plasmodium falciparum thioredoxin

Robien, M.A., Hol, W.G.J., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

To be published

Released	2004-04-13
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	thioredoxin (protein)

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1TQX \| pdb_00001tqx	Download File View File

Crystal Structure of Pfal009167 A Putative D-Ribulose 5-Phosphate 3-Epimerase from P.falciparum

Caruthers, J., Bosch, J., Hol, W.G.J., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

(2006) Proteins 62: 338-342

Released	2004-12-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	D-ribulose-5-phosphate 3-epimerase, putative (protein)
Unique Ligands	SO4, ZN

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1V8B \| pdb_00001v8b	Download File View File

Crystal structure of a hydrolase

Tanaka, N., Nakanishi, M., Kusakabe, Y., Shiraiwa, K., Kitade, Y., Nakamura, K.T.

(2004) J Mol Biology 343: 1007-1017

Released	2004-10-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	adenosylhomocysteinase (protein)
Unique Ligands	ADN, NAD

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1VYQ \| pdb_00001vyq	Download File View File

Novel inhibitors of Plasmodium Falciparum dUTPase provide a platform for anti-malarial drug design

Whittingham, J.L., Leal, I., Kasinathan, G., Nguyen, C., Bell, E., Jones, A.F., Berry, C., Benito, A., Turkenburg, J.P., Dodson, E.J., Ruiz Perez, L.M., Wilkinson, A.J., Johansson, N.G., Brun, R., Gilbert, I.H., Gonzalez Pacanowska, D., Wilson, K.S.

(2005) Structure 13: 329

Released	2005-05-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE (protein)
Unique Ligands	DUX

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1XIQ \| pdb_00001xiq	Download File View File

Plasmodium falciparum Nucleoside diphosphate kinase B

Robien, M.A., Bosch, J., Hol, W.G.J., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

To be published

Released	2004-10-12
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Nucleoside diphosphate kinase B (protein)

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1Y6Z \| pdb_00001y6z	Download File View File

Middle domain of Plasmodium falciparum putative heat shock protein PF14_0417

Lunin, V.V., Botchkareva, E., Loppnau, P., Amani, M., Bray, J., Vedadi, M., Edwards, A., Arrowsmith, C., Sundstrom, M., Bochkarev, A., Hui, R., Plotnikova, O., Structural Genomics Consortium (SGC)

(2007) Mol Biochem Parasitol 151: 100-110

Released	2005-02-08
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	heat shock protein, putative (protein)

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1YJ8 \| pdb_00001yj8	Download File View File

Initial structural analysis of Plasmodium falciparum Glycerol-3-phosphate dehydrogenase

Robien, M.A., Hol, W.G.J., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

To be published

Released	2005-02-01
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	glycerol-3-phosphate dehydrogenase (protein)

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1YVB \| pdb_00001yvb	Download File View File

the Plasmodium falciparum Cysteine Protease Falcipain-2

Wang, S.X.

(2006) Proc Natl Acad Sci U S A 103: 11503-11508

Released	2006-03-28
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Gallus gallus Plasmodium falciparum 3D7
Macromolecule	Cystatin (protein) falcipain 2 (protein)
Unique Ligands	GOL

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1YXE \| pdb_00001yxe	Download File View File

Structure and inter-domain interactions of domain II from the blood stage malarial protein, apical membrane antigen 1

Feng, Z.P., Keizer, D.W., Stevenson, R.A., Yao, S., Babon, J.J., Murphy, V.J., Anders, R.F., Norton, R.S.

(2005) J Mol Biology 350: 641-656

Released	2005-07-05
Method	SOLUTION NMR
Organisms	Plasmodium falciparum 3D7
Macromolecule	apical membrane antigen 1 (protein)

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1Z40 \| pdb_00001z40	Download File View File

AMA1 from Plasmodium falciparum

Bai, T., Becker, M., Gupta, A., Strike, P., Murphy, V.J., Anders, R.F., Batchelor, A.H.

(2005) Proc Natl Acad Sci U S A 102: 12736-12741

Released	2005-08-16
Method	X-RAY DIFFRACTION 1.901 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	apical membrane antigen 1 precursor (protein)
Unique Ligands	CL

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1Z6G \| pdb_00001z6g	Download File View File

Crystal structure of guanylate kinase from Plasmodium falciparum

Mulichak, A.M., Lew, J., Artz, J., Choe, J., Walker, J.R., Zhao, Y., Sundstrom, M., Arrowsmith, C., Edwards, A., Bochkarev, A., Hui, R., Gao, M., Structural Genomics Consortium (SGC)

(2007) Mol Biochem Parasitol 151: 100-110

Released	2005-04-05
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	guanylate kinase (protein)
Unique Ligands	EPE, SO4

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2BPI \| pdb_00002bpi	Download File View File

Structure of Iron dependent superoxide dismutase from P. falciparum.

Boucher, I.W., Brannigan, J., Wilkinson, A.J., Brzozowski, M.

(2006) BMC Struct Biol 6: 20

Released	2006-10-11
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	FE-SUPEROXIDE DISMUTASE (protein)
Unique Ligands	FE

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2BSX \| pdb_00002bsx	Download File View File

Crystal structure of the Plasmodium falciparum purine nucleoside phosphorylase complexed with inosine

Schnick, C., Brzozowski, A.M., Dodson, E.J., Murshudov, G.N., Brannigan, J.A., Wilkinson, A.J.

(2005) Acta Crystallogr D Biol Crystallogr 61: 1245

Released	2005-08-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	PURINE NUCLEOSIDE PHOSPHORYLASE (protein)
Unique Ligands	NOS

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2C07 \| pdb_00002c07	Download File View File

Oxoacyl-ACP reductase of Plasmodium falciparum

Urch, J.E., Wickramasinghe, S.R., Inglis, K.A., Muller, S., Fairlamb, A.H., van Aalten, D.M.F.

(2006) Biochem J 393: 447

Released	2005-10-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE (protein)
Unique Ligands	SO4

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2C0D \| pdb_00002c0d	Download File View File

Structure of the mitochondrial 2-cys peroxiredoxin from Plasmodium falciparum

Boucher, I.W., Brannigan, J.A., Wilkinson, A.J., Brzozowski, A.M., Muller, S.

(2006) Mol Microbiol 61: 948

Released	2006-11-21
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	THIOREDOXIN PEROXIDASE 2 (protein)

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2F84 \| pdb_00002f84	Download File View File

Crystal Structure of an orotidine-5'-monophosphate decarboxylase homolog from P.falciparum

Caruthers, J.M., Robein, M., Merritt, E.A., Hol, W.G.J., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

To be published

Released	2005-12-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	orotidine monophosphate decarboxylase (protein)
Unique Ligands	PO4

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2F8M \| pdb_00002f8m	Download File View File

Ribose 5-phosphate isomerase from Plasmodium falciparum

Holmes, M.A., Merritt, E.A., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

(2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 427-431

Released	2005-12-27
Method	X-RAY DIFFRACTION 2.087 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	ribose 5-phosphate isomerase (protein)
Unique Ligands	PO4

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2FOI \| pdb_00002foi	Download File View File

Synthesis, Biological Activity, and X-Ray Crystal Structural Analysis of Diaryl Ether Inhibitors of Malarial Enoyl ACP Reductase.

Freundlich, J.S., Shieh, H., Anderson, J.W., Kuo, M., Yu, M., Valderramos, J., Karagyozov, L., Tsai, H., Lucumi, E., Jacobs Jr., W.R., Schiehser, G.A., Jacobus, D.P., Fidock, D.A., Sacchettini, J.C.

(2007) J Biological Chem 282: 25436-25444

Released	2007-01-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	enoyl-acyl carrier reductase (protein)
Unique Ligands	JPA, NAD