RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Source Organism Taxonomy Name (Full Lineage) = "Shewanella amazonensis SB2B"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Bordetella bronchiseptica RB50 (1)
	Caulobacter vibrioides CB15 (1)
	Jannaschia sp. CCS1 (1)
	Neisseria gonorrhoeae FA 1090 (1)
	Ruegeria pomeroyi DSS-3 (1)
	Shewanella oneidensis (1)
	Thermotoga maritima MSB8 (1)
	uncultured marine organism (1)

Taxonomy

	Bacteria (7)
	unclassified sequences (1)

Experimental Method

X-RAY DIFFRACTION (8)

Polymer Entity Type

Protein (8)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (3)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)

Release Date

2005 - 2009 (8)

Enzyme Classification Name

	Transferases (2)
	Hydrolases (1)

Symmetry Type

	Cyclic (6)
	Asymmetric (3)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (3)
	All alpha proteins (1)

AllSelected

1 to 8 of 8 Structures

Page 1 of 1

Sort by

Explore in 3D

2OOC	Download File View File

Crystal structure of Histidine Phosphotransferase ShpA (NP_419930.1) from Caulobacter crescentus at 1.52 A resolution

Joint Center for Structural Genomics (JCSG)

(2009) J Mol Biol 390: 686-698

Released	2007-02-06
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Caulobacter vibrioides CB15
Macromolecule	Histidine phosphotransferase (protein)
Unique Ligands	GOL, PG4

Explore in 3D

2Q8U	Download File View File

CRYSTAL STRUCTURE OF MRE11 FROM THERMOTOGA MARITIMA MSB8 (TM1635) AT 2.20 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

(2010) J Mol Biol 397: 647-663

Released	2007-06-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	Exonuclease, putative (protein)

Explore in 3D

2QTP	Download File View File

Crystal structure of a duf1185 family protein (spo0826) from silicibacter pomeroyi dss-3 at 2.10 A resolution

Joint Center for Structural Genomics (JCSG)

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 1182-1189

Released	2007-08-21
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Ruegeria pomeroyi DSS-3
Macromolecule	Uncharacterized protein (protein)

Explore in 3D

3BY7	Download File View File

CRYSTAL STRUCTURE OF A PROTEIN STRUCTURALLY SIMILAR TO SM/LSM-LIKE RNA-BINDING PROTEINS (JCVI_PEP_1096686650277) FROM UNCULTURED MARINE ORGANISM AT 2.60 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

(2009) Proteins 75: 296-307

Released	2008-01-29
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	uncultured marine organism
Macromolecule	uncharacterized protein (protein)

Explore in 3D

3BYQ	Download File View File

Crystal structure of a duf1185 family protein (bb2672) from bordetella bronchiseptica rb50 at 1.70 A resolution

Joint Center for Structural Genomics (JCSG)

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 1182-1189

Released	2008-01-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bordetella bronchiseptica RB50
Macromolecule	Uncharacterized protein DUF1185 (protein)
Unique Ligands	CL, EDO, PG4

Explore in 3D

3DEE	Download File View File

CRYSTAL STRUCTURE OF A PUTATIVE REGULATORY PROTEIN INVOLVED IN TRANSCRIPTION (NGO1945) FROM NEISSERIA GONORRHOEAE FA 1090 AT 2.25 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 1174-1181

Released	2008-08-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Neisseria gonorrhoeae FA 1090
Macromolecule	Putative regulatory protein (protein)
Unique Ligands	CL, IMD

Explore in 3D

3EQX	Download File View File

CRYSTAL STRUCTURE OF A FIC FAMILY PROTEIN (SO_4266) FROM SHEWANELLA ONEIDENSIS AT 1.6 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

(2009) Proteins 75: 264-271

Released	2008-10-14
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Shewanella oneidensis
Macromolecule	FIC DOMAIN CONTAINING TRANSCRIPTIONAL REGULATOR (protein)
Unique Ligands	PGE

Explore in 3D

3H0N	Download File View File

Crystal structure of a duf1470 family protein (jann_2411) from jannaschia sp. ccs1 at 1.45 A resolution

Joint Center for Structural Genomics (JCSG)

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 1198-1204

Released	2009-04-21
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Jannaschia sp. CCS1
Macromolecule	uncharacterized protein DUF1470 (protein)
Unique Ligands	ACT, GOL, NA, NI, ZN

1 to 8 of 8 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification