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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Xanthomonas oryzae"

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Search Summary

This query matches 63 Structures.

Refinements

Structure Determination Methodology

experimental (63)

Scientific Name of Source Organism

	Xanthomonas oryzae pv. oryzae KACC 10331 (37)
	Xanthomonas oryzae pv. oryzae (14)
	Xanthomonas oryzae pv. oryzae MAFF 311018 (4)
	Xanthomonas oryzae pv. oryzae PXO99A (4)
	Xanthomonas oryzae pv. oryzicola (4)
	Xanthomonas oryzae (3)
	Xipdecavirus Xp10 (3)
	synthetic construct (3)

Taxonomy

	Bacteria (63)
	Duplodnaviria (3)
	other sequences (3)

Experimental Method

	X-RAY DIFFRACTION (60)
	ELECTRON MICROSCOPY (2)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (62)
	DNA (3)
	RNA (3)

Refinement Resolution (Å)

	1.5 - 2.0 (17)
	2.0 - 2.5 (31)
	2.5 - 3.0 (9)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (9)
	2010 - 2014 (20)
	2015 - 2019 (25)
	2020 - 2024 (9)

Enzyme Classification Name

	Hydrolases (27)
	Transferases (6)
	Isomerases (4)
	Ligases (5)
	Lyases (4)
	Oxidoreductases (1)
	Translocases (1)

Symmetry Type

	Asymmetric (27)
	Cyclic (25)
	Dihedral (11)

SCOP Classification

	Alpha and beta proteins (a/b) (17)
	Alpha and beta proteins (a+b) (23)
	All alpha proteins (2)
	All beta proteins (1)

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1 to 25 of 63 Structures

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2MC6	Download File View File

A bacteriophage transcription regulator inhibits bacterial transcription initiation by sigma-factor displacement

Liu, B., Shadrin, A., Sheppard, C., Xu, Y., Severinov, K., Matthews, S., Wigneshweraraj, S.

(2014) Nucleic Acids Res 42: 4294-4305

Released	2014-04-02
Method	SOLUTION NMR
Organisms	Xanthomonas oryzae pv. oryzae KACC 10331 Xipdecavirus Xp10
Macromolecule	DNA-directed RNA polymerase subunit beta' (protein) RNA polymerase inhibitor p7 (protein)

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3E5N	Download File View File

Crystal structure of D-alanine-D-alanine ligase from Xanthomonas oryzae pv. oryzae KACC10331

Doan, T.N.T., Kim, J.K., Kim, H.S., Ahn, Y.J., Kim, J.G., Lee, B.M., Kang, L.W.

To be published

Released	2009-08-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Xanthomonas oryzae pv. oryzae MAFF 311018
Macromolecule	D-alanine-D-alanine ligase A (protein)

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3E6G	Download File View File

Crystal structure of XometC, a cystathionine c-lyase-like protein from Xanthomonas oryzae pv.oryzae

Ngo, H.P.T., Kim, J.K., Kim, H.S., Jung, J.H., Ahn, Y.J., Kim, J.G., Lee, B.M., Kang, H.W., Kang, L.W.

To be published

Released	2009-08-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Xanthomonas oryzae pv. oryzae
Macromolecule	Cystathionine gamma-lyase-like protein (protein)

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3FK5	Download File View File

Crystal structure of 3-oxoacyl-(acyl carrier protein) synthase III, FabH (Xoo4209) from Xanthomonas oryzae pv. oryzae KACC10331

Natarajan, S., Huynh, K.-H., Kang, L.W.

To be published

Released	2009-12-22
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Xanthomonas oryzae pv. oryzae
Macromolecule	3-oxoacyl-synthase III (protein)

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3H2G	Download File View File

Crystal structure of a rice cell wall degrading esterase LipA from Xanthomonas oryzae

Aparna, G., Chatterjee, A., Sonti, R.V., Sankaranarayanan, R.

(2009) Plant Cell 21: 1860-1873

Released	2009-08-18
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Xanthomonas oryzae pv. oryzae
Macromolecule	esterase (protein)

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3H2H	Download File View File

Crystal structure of G231F mutant of the rice cell wall degrading esterase LipA from Xanthomonas oryzae

Aparna, G., Chatterjee, A., Sonti, R.V., Sankaranarayanan, R.

(2009) Plant Cell 21: 1860-1873

Released	2009-08-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Xanthomonas oryzae pv. oryzae
Macromolecule	esterase (protein)

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3H2I	Download File View File

Crystal structure of N228W mutant of the rice cell wall degrading esterase LipA from Xanthomonas oryzae

Aparna, G., Chatterjee, A., Sonti, R.V., Sankaranarayanan, R.

(2009) Plant Cell 21: 1860-1873

Released	2009-08-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Xanthomonas oryzae pv. oryzae
Macromolecule	esterase (protein)

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3H2J	Download File View File

Crystal structure of the rice cell wall degrading esterase LipA from Xanthomonas oryzae

Aparna, G., Chatterjee, A., Sonti, R.V., Sankaranarayanan, R.

(2009) Plant Cell 21: 1860-1873

Released	2009-08-18
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Xanthomonas oryzae pv. oryzae
Macromolecule	esterase (protein)

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3H2K	Download File View File

Crystal structure of a ligand-bound form of the rice cell wall degrading esterase LipA from Xanthomonas oryzae

Aparna, G., Chatterjee, A., Sonti, R.V., Sankaranarayanan, R.

(2009) Plant Cell 21: 1860-1873

Released	2009-08-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Xanthomonas oryzae pv. oryzae
Macromolecule	esterase (protein)
Unique Ligands	BOG

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3JRU	Download File View File

Crystal structure of Leucyl Aminopeptidase (pepA) from Xoo0834,Xanthomonas oryzae pv. oryzae KACC10331

Natarajan, S., Huynh, K.-H., Kang, L.W.

To be published

Released	2010-09-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Xanthomonas oryzae pv. oryzae
Macromolecule	Probable cytosol aminopeptidase (protein)
Unique Ligands	CA, CO3, ZN

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3K89	Download File View File

Structure of X. oryzae pv. oryzae KACC10331, Xoo0880(fabD) complexed with glycerol

Natarajan, S., Jung, J.W., Kang, L.W.

To be published

Released	2009-10-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Xanthomonas oryzae pv. oryzae
Macromolecule	Malonyl CoA-ACP transacylase (protein)
Unique Ligands	GOL

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3LNU	Download File View File

Crystal structure of ParE subunit

Jung, H.Y., Heo, Y.-S.

To be published

Released	2011-02-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Xanthomonas oryzae pv. oryzae KACC 10331
Macromolecule	Topoisomerase IV subunit B (protein)

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3LPS	Download File View File

Crystal structure of parE

Jung, H.Y., Heo, Y.-S.

To be published

Released	2011-02-16
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Xanthomonas oryzae pv. oryzae KACC 10331
Macromolecule	Topoisomerase IV subunit B (protein)
Unique Ligands	NOV

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3NX6	Download File View File

Crystal Structure of co-chaperonin, GroES (Xoo4289) from Xanthomonas oryzae pv. oryzae KACC10331

Natarajan, S., Doan, T.T.N., Kang, L.-W.

To be published

Released	2010-07-28
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Xanthomonas oryzae pv. oryzae KACC 10331
Macromolecule	10kDa chaperonin (protein)

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3R5F	Download File View File

Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with ATP

Doan, T.T.N., Kim, J.K., Kang, L.W.

To be published

Released	2011-05-25
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Xanthomonas oryzae pv. oryzae KACC 10331
Macromolecule	D-alanine--D-alanine ligase 1 (protein)
Unique Ligands	ATP, MG

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3R97	Download File View File

Crystal structure of malonyl-CoA:acyl carrier protein transacylase (FabD), Xoo0880, from Xanthomonas oryzae pv. oryzae KACC10331

Natarajan, S., Jung, J.W., Kang, L.W.

To be published

Released	2011-04-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Xanthomonas oryzae pv. oryzae KACC 10331
Macromolecule	Malonyl CoA-ACP transacylase (protein)
Unique Ligands	NHE

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3RFC	Download File View File

Crystal structure of D-alanine-D-alanine ligase A from Xanthomonas oryzae pathovar oryzae with ADP

Doan, T.T.N., Kim, J.K., Ahn, Y.J., Kang, L.W.

To be published

Released	2011-05-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Xanthomonas oryzae pv. oryzae MAFF 311018
Macromolecule	D-alanine--D-alanine ligase 1 (protein)
Unique Ligands	ADP, MG

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3S8M	Download File View File

The Crystal Structure of FabV

Li, H., Zhang, X.L., Bi, L.J., He, J., Jiang, T.

(2011) PLoS One 6: e26743-e26743

Released	2011-11-16
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Xanthomonas oryzae pv. oryzae MAFF 311018
Macromolecule	Enoyl-ACP Reductase (protein)

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3UGM	Download File View File

Structure of TAL effector PthXo1 bound to its DNA target

Mak, A.N.S., Bradley, P., Cernadas, R.A., Bogdanove, A.J., Stoddard, B.L.

(2012) Science 335: 716-719

Released	2012-01-04
Method	X-RAY DIFFRACTION 3 Å
Organisms	Xanthomonas oryzae pv. oryzae PXO99A
Macromolecule	TAL effector AvrBs3/PthA (protein) DNA-1 (nucleic acid) DNA-2 (nucleic acid)

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3VZI	Download File View File

Crystal Structure of CRISPR-associated Protein

Bae, E., Koo, Y.

(2013) J Mol Biology 425: 3799-3810

Released	2013-03-27
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Xanthomonas oryzae pv. oryzae PXO99A
Macromolecule	Crispr-associated protein Cas5, dvulg subtype (protein)

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4IXS	Download File View File

Native structure of xometc at ph 5.2

Ngo, H.P.T., Kim, J.K., Kang, L.W.

(2014) Acta Crystallogr D Biol Crystallogr 70: 596-606

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Xanthomonas oryzae pv. oryzae KACC 10331
Macromolecule	Cystathionine gamma-lyase-like protein (protein)
Unique Ligands	CO3, GOL

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4IXZ	Download File View File

Native structure of cystathionine gamma lyase (XometC) from xanthomonas oryzae pv. oryzae at pH 9.0

Ngo, H.P.T., Kim, J.K., Kang, L.W.

(2014) Acta Crystallogr D Biol Crystallogr 70: 596-606

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Xanthomonas oryzae pv. oryzae KACC 10331
Macromolecule	Cystathionine gamma-lyase-like protein (protein)
Unique Ligands	BCT, BME, GOL

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4IY7	Download File View File

crystal structure of cystathionine gamma lyase (XometC) from Xanthomonas oryzae pv. oryzae in complex with E-site serine, A-site external aldimine structure with serine and A-site external aldimine structure with aminoacrylate intermediates

Ngo, H.P.T., Kim, J.K., Kang, L.W.

(2014) Acta Crystallogr D Biol Crystallogr 70: 596-606

Released	2014-01-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Xanthomonas oryzae pv. oryzae KACC 10331
Macromolecule	Cystathionine gamma-lyase-like protein (protein)
Unique Ligands	0JO, GOL, KOU, PYR, SER, SO4

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4IYO	Download File View File

Crystal structure of cystathionine gamma lyase from Xanthomonas oryzae pv. oryzae (XometC) in complex with E-site serine, A-site serine, A-site external aldimine structure with aminoacrylate and A-site iminopropionate intermediates

Ngo, H.P.T., Kim, J.K., Kang, L.W.

(2014) Acta Crystallogr D Biol Crystallogr 70: 596-606

Released	2014-01-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Xanthomonas oryzae pv. oryzae KACC 10331
Macromolecule	Cystathionine gamma-lyase-like protein (protein) Cystathionine gamma-lyase-like protein, LYS201A modified (protein)
Unique Ligands	0JO, GOL, NAK, PYR, SER, SO4

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4KL0	Download File View File

Crystal structure of the effector protein XOO4466

Yu, S., Rhee, S.

(2013) J Struct Biol 184: 361-366

Released	2013-10-09
Method	X-RAY DIFFRACTION 1.598 Å
Organisms	Xanthomonas oryzae pv. oryzae KACC 10331
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	CA