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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "dengue virus type 3"

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Search Summary

This query matches 69 Structures.

Refinements

Structure Determination Methodology

experimental (69)

Scientific Name of Source Organism

	dengue virus type 3 (57)
	Homo sapiens (16)
	Dengue virus 3 Philippines/H87/1956 (8)
	Mus musculus (4)
	Dengue virus 3 Singapore/8120/1995 (2)
	Dengue virus 3 Sri Lanka/1266/2000 (2)
	Bos taurus (1)
	Dengue virus (1)

Taxonomy

	Riboviria (69)
	Eukaryota (21)

Experimental Method

	X-RAY DIFFRACTION (55)
	ELECTRON MICROSCOPY (14)

Polymer Entity Type

	Protein (69)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (20)
	2.0 - 2.5 (21)
	2.5 - 3.0 (5)
	3.0 - 3.5 (3)
	3.5 - 4.0 (5)
	4.0 - 4.5 (1)
	> 4.5 (10)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (14)
	2015 - 2019 (38)
	2020 - 2024 (15)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (24)
	Hydrolases (12)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (49)
	Cyclic (12)
	Icosahedral (6)
	Helical (3)

SCOP Classification

	Alpha and beta proteins (a/b) (13)
	Artifacts (8)
	All beta proteins (5)
	All alpha proteins (1)
	Small proteins (1)

AllSelected

1 to 25 of 69 Structures

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1UZG \| pdb_00001uzg	Download File View File

CRYSTAL STRUCTURE OF THE DENGUE TYPE 3 VIRUS ENVELOPE PROTEIN

Modis, Y., Harrison, S.C.

(2005) J Virol 79: 1223

Released	2005-03-15
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	dengue virus type 3
Macromolecule	MAJOR ENVELOPE PROTEIN E (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUL, MAN, NAG

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3J6S \| pdb_00003j6s	Download File View File

Cryo-EM structure of Dengue virus serotype 3 at 28 degrees C

Fibriansah, G., Tan, J.L., Smith, S.A., de Alwis, R., Ng, T.-S., Kostyuchenko, V.A., Kukkaro, P., de Silva, A.M., Crowe Jr., J.E., Lok, S.-M.

(2015) Nat Commun 6: 6341-6341

Released	2015-03-04
Method	ELECTRON MICROSCOPY 6 Å
Organisms	dengue virus type 3
Macromolecule	envelope protein (protein) membrane protein (protein)

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3J6T \| pdb_00003j6t	Download File View File

Cryo-EM structure of Dengue virus serotype 3 at 37 degrees C

Fibriansah, G., Tan, J.L., Smith, S.A., de Alwis, R., Ng, T.-S., Kostyuchenko, V.A., Kukkaro, P., de Silva, A.M., Crowe Jr., J.E., Lok, S.-M.

(2015) Nat Commun 6: 6341-6341

Released	2015-03-04
Method	ELECTRON MICROSCOPY 7 Å
Organisms	dengue virus type 3
Macromolecule	envelope protein (protein) membrane protein (protein)

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3J6U \| pdb_00003j6u	Download File View File

Cryo-EM structure of Dengue virus serotype 3 in complex with human antibody 5J7 Fab

Fibriansah, G., Tan, J.L., Smith, S.A., de Alwis, R., Ng, T.-S., Kostyuchenko, V.A., Kukkaro, P., de Silva, A.M., Crowe Jr., J.E., Lok, S.-M.

(2015) Nat Commun 6: 6341-6341

Released	2015-03-04
Method	ELECTRON MICROSCOPY 9 Å
Organisms	Homo sapiens dengue virus type 3
Macromolecule	Fab 5J7 heavy chain (protein) Fab 5J7 light chain (protein) envelope protein (protein) membrane protein (protein)

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3P8Z \| pdb_00003p8z	Download File View File

Dengue Methyltransferase bound to a SAM-based inhibitor

Noble, C.G., Yap, L.J., Lescar, J.

(2011) J Biological Chem 286: 6233-6240

Released	2010-12-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	dengue virus type 3
Macromolecule	Non-structural protein 5 (protein)
Unique Ligands	36A, SAH

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3P97 \| pdb_00003p97	Download File View File

Dengue 3 NS5 Methyltransferase bound to the substrate S-Adenosyl methionine

Noble, C.G., Yap, L.J., Lescar, J.

(2011) J Biological Chem 286: 6233-6240

Released	2010-12-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	dengue virus type 3
Macromolecule	Non-structural protein 5 (protein)
Unique Ligands	SAM

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3U1I \| pdb_00003u1i	Download File View File

Dengue virus protease covalently bound to a peptide

Noble, C.G.

(2012) J Virol 86: 438-446

Released	2011-11-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Dengue virus 3 Singapore/8120/1995
Macromolecule	Serine protease NS3 (protein) Serine protease subunit NS2B (protein) peptide of (BEZ)(NLE)KR(OAR) (protein)
Unique Ligands	SO4

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3U1J \| pdb_00003u1j	Download File View File

Aprotinin bound to Dengue virus protease

Noble, C.G.

(2012) J Virol 86: 438-446

Released	2011-11-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus Dengue virus 3 Singapore/8120/1995
Macromolecule	Pancreatic trypsin inhibitor (protein) Serine protease NS3 (protein) Serine protease subunit NS2B (protein)

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3UZE \| pdb_00003uze	Download File View File

Crystal structure of the dengue virus serotype 3 envelope protein domain III in complex with the variable domains of Mab 4E11

Cockburn, J.J.B., Navarro Sanchez, M.E., Fretes, N., Urvoas, A., Staropoli, I., Kikuti, C.M., Coffey, L.L., Arenzana Seisdedos, F., Bedouelle, H., Rey, F.A.

(2012) Structure 20: 303-314

Released	2012-02-22
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Mus musculus dengue virus type 3
Macromolecule	Envelope protein (protein) Variable domains of murine anti-dengue Mab 4E11 (protein)
Unique Ligands	EDO, EPE, GOL

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3VTT \| pdb_00003vtt	Download File View File

High Resolution crystal structure of Dengue 3 Envelope protein domain III (ED3)

Elahi, M., Islam, M.M., Kuroda, Y.

(2013) Proteins 81: 1090-1095

Released	2012-12-26
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Dengue virus 3 Philippines/H87/1956
Macromolecule	Envelope protein E (protein)
Unique Ligands	SO4

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3VWS \| pdb_00003vws	Download File View File

Dengue serotype 3 RNA-dependent RNA polymerase bound to NITD-107

Noble, C.G., Lescar, J.

(2013) J Virol 87: 5291-5295

Released	2013-02-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	dengue virus type 3
Macromolecule	Non-structural protein 5 (protein)
Unique Ligands	PEG, VWS, ZN

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4ALA \| pdb_00004ala	Download File View File

Structure of Dengue virus DIII in complex with Fab 2H12

Midgley, C.M., Flanagan, A., Mongkolsapaya, J., Grimes, J.M., Screaton, G.R.

(2012) J Immunol 188: 4971

Released	2012-06-06
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Mus musculus dengue virus type 3
Macromolecule	ENVELOPE PROTEIN (protein) FAB 2H12 HEAVY CHAIN (protein) FAB 2H12 LIGHT CHAIN (protein)
Unique Ligands	GOL

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4CTJ \| pdb_00004ctj	Download File View File

DENGUE 3 NS5 METHYLTRANSFERASE BOUND TO S-ADENOSYL METHIONINE AND FRAGMENT 3A9

Barral, K., Bricogne, G., Sharff, A.

(2014) Antiviral Res 106: 61

Released	2014-04-16
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	dengue virus type 3
Macromolecule	NON-STRUCTURAL PROTEIN 5 (protein)
Unique Ligands	3A9, NA, SAM

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4CTK \| pdb_00004ctk	Download File View File

DENGUE 3 NS5 METHYLTRANSFERASE BOUND TO S-ADENOSYL METHIONINE AND FRAGMENT 2A4

Barral, K., Bricogne, G., Sharff, A.

(2014) Antiviral Res 106: 61

Released	2014-04-16
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	dengue virus type 3
Macromolecule	POLYPROTEIN (protein)
Unique Ligands	DMS, NA, SAM, SVN

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4HHJ \| pdb_00004hhj	Download File View File

Dengue serotype 3 RNA-dependent RNA polymerase

Noble, C.G., Lescar, J.

(2013) J Virol 87: 5291-5295

Released	2013-02-27
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	dengue virus type 3
Macromolecule	Non-structural protein 5 (protein)
Unique Ligands	P6G, PEG, ZN

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4R05 \| pdb_00004r05	Download File View File

Crystal structure of the refolded DENV3 methyltransferase

Brecher, M.B., Li, Z., Zhang, J., Chen, H., Lin, Q., Liu, B., Li, H.M.

(2015) Protein Sci 24: 117-128

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	dengue virus type 3
Macromolecule	Nonstructural protein NS5 (protein)

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4R8R \| pdb_00004r8r	Download File View File

Dengue virus serotype 3 methyltransferase without a bound S-adenosyl methionine

Noble, C.G.

(2014) Antiviral Res 111C: 78-81

Released	2014-10-15
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	dengue virus type 3
Macromolecule	nonstructural protein NS5 (protein)

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4R8S \| pdb_00004r8s	Download File View File

Dengue serotype 3 methyltransferase bound to Sinefungin

Noble, C.G.

(2014) Antiviral Res 111C: 78-81

Released	2014-10-15
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	dengue virus type 3
Macromolecule	nonstructural protein NS5 (protein)
Unique Ligands	SFG

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4V0Q \| pdb_00004v0q	Download File View File

Dengue Virus Full Length NS5 Complexed with SAH

Zhao, Y., Soh, S., Zheng, J., Phoo, W.W., Swaminathan, K., Cornvik, T.C., Lim, S.P., Shi, P.-Y., Lescar, J., Vasudevan, S.G., Luo, D.

(2015) PLoS Pathog 11: 04682

Released	2015-01-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	dengue virus type 3
Macromolecule	NS5 POLYMERASE (protein)
Unique Ligands	ACT, GOL, SAH, ZN

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4V0R \| pdb_00004v0r	Download File View File

DENGUE VIRUS FULL LENGTH NS5 COMPLEXED WITH GTP AND SAH

Zhao, Y., Soh, S., Zheng, J., Phoo, W.W., Swaminathan, K., Cornvik, T.C., Lim, S.P., Shi, P.-Y., Lescar, J., Vasudevan, S.G., Luo, D.

(2015) PLoS Pathog 11: 04682

Released	2015-01-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	dengue virus type 3
Macromolecule	NS5 POLYMERASE (protein)
Unique Ligands	FMT, GOL, GTP, MG, SAH, ZN

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5CCV \| pdb_00005ccv	Download File View File

Crystal structure of full-length NS5 from dengue virus type 3

Klema, V.J., Choi, K.H.

(2016) PLoS Pathog 12: e1005451-e1005451

Released	2016-02-03
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Dengue virus 3 Philippines/H87/1956
Macromolecule	RNA-directed RNA polymerase NS5 (protein)
Unique Ligands	SAH, ZN

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5CUQ \| pdb_00005cuq	Download File View File

Identification and characterization of novel broad spectrum inhibitors of the flavivirus methyltransferase

Brecher, B., Chen, H., Li, Z., Banavali, N.K., Jones, S.A., Zhang, J., Kramer, L.D., Li, H.M.

(2015) ACS Infect Dis 1: 340-349

Released	2016-02-03
Method	X-RAY DIFFRACTION 1.696 Å
Organisms	dengue virus type 3
Macromolecule	Nonstructural protein NS5 (protein)
Unique Ligands	NSC

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5DTO \| pdb_00005dto	Download File View File

Dengue virus full length NS5 complexed with viral Cap 0-RNA and SAH

Zhao, Y., Soh, T.S., Lim, S.P., Chung, K.Y., Swaminathan, K., Vasudevan, S.G., Shi, P.-Y., Lescar, J., Luo, D.

(2015) Proc Natl Acad Sci U S A 112: 14834-14839

Released	2015-11-25
Method	X-RAY DIFFRACTION 2.603 Å
Organisms	Dengue virus dengue virus type 3
Macromolecule	NS5 (protein) RNA (5'-R(PAPGPUPU)-3') (nucleic acid)
Unique Ligands	ACT, M7G, MG, SAH, ZN

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5E9Q \| pdb_00005e9q	Download File View File

DENGUE 3 NS5 METHYLTRANSFERASE BOUND TO S-ADENOSYL METHIONINE AND MOLECULE BF174

Barral, K., Bricogne, G., Sharff, A.

(2016) Eur J Med Chem 125: 865-880

Released	2016-10-26
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	dengue virus type 3
Macromolecule	Genome polyprotein (protein)
Unique Ligands	5KY, SAM

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5EC8 \| pdb_00005ec8	Download File View File

DENGUE 3 NS5 METHYLTRANSFERASE BOUND TO S-ADENOSYL METHIONINE AND COMPOUND BF175

Barral, K., Bricogne, G., Sharff, A.

(2016) Eur J Med Chem 125: 865-880

Released	2016-10-26
Method	X-RAY DIFFRACTION 1.714 Å
Organisms	Dengue virus 3 Philippines/H87/1956
Macromolecule	Genome polyprotein (protein)
Unique Ligands	5LP, SAM

1 to 25 of 69 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1UZG | pdb_00001uzg

3J6S | pdb_00003j6s

3J6T | pdb_00003j6t

3J6U | pdb_00003j6u

3P8Z | pdb_00003p8z

3P97 | pdb_00003p97

3U1I | pdb_00003u1i

3U1J | pdb_00003u1j

3UZE | pdb_00003uze

3VTT | pdb_00003vtt

3VWS | pdb_00003vws

4ALA | pdb_00004ala

4CTJ | pdb_00004ctj

4CTK | pdb_00004ctk

4HHJ | pdb_00004hhj

4R05 | pdb_00004r05

4R8R | pdb_00004r8r

4R8S | pdb_00004r8s

4V0Q | pdb_00004v0q

4V0R | pdb_00004v0r

5CCV | pdb_00005ccv

5CUQ | pdb_00005cuq

5DTO | pdb_00005dto

5E9Q | pdb_00005e9q

5EC8 | pdb_00005ec8