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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chem Comp Monomers (Polymer Entity Container Identifiers) = "0TD"

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Search Summary

This query matches 189 Structures.

Refinements

Structure Determination Methodology

experimental (189)

Scientific Name of Source Organism

	Thermus thermophilus HB8 (153)
	Escherichia coli (100)
	Tequatrovirus T4 (50)
	Escherichia coli K-12 (40)
	synthetic construct (16)
	Thermus thermophilus (9)
	Thermus thermophilus HB27 (6)
	Escherichia phage T4 (4)
	Bos taurus (3)
	Paenibacillus (3)

More...

Taxonomy

	Bacteria (189)
	Duplodnaviria (54)
	other sequences (16)
	Eukaryota (10)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (157)
	ELECTRON MICROSCOPY (32)

Polymer Entity Type

	Protein (189)
	RNA (189)
	DNA (1)

Refinement Resolution (Å)

	2.0 - 2.5 (13)
	2.5 - 3.0 (71)
	3.0 - 3.5 (61)
	3.5 - 4.0 (40)
	4.0 - 4.5 (3)
	> 4.5 (1)

Release Date

	2010 - 2014 (34)
	2015 - 2019 (74)
	2020 - 2024 (79)
	2025 - 2029 (2)

Enzyme Classification Name

Transferases (1)

Symmetry Type

Asymmetric (189)

AllSelected

1 to 25 of 189 Structures

Page 1 of 8

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Explore in 3D

4DR1	Download File View File

Crystal structure of the apo 30S ribosomal subunit from Thermus thermophilus (HB8)

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

(2013) Nat Commun 4: 1355-1355

Released	2012-11-14
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, ZN

Explore in 3D

4DR2	Download File View File

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with multiple copies of paromomycin molecules bound

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

(2013) Nat Commun 4: 1355-1355

Released	2012-11-14
Method	X-RAY DIFFRACTION 3.249 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, PAR, ZN

Explore in 3D

4DR3	Download File View File

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with streptomycin bound

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

(2013) Nat Commun 4: 1355-1355

Released	2012-11-14
Method	X-RAY DIFFRACTION 3.348 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, SRY, ZN

Explore in 3D

4DR4	Download File View File

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

(2013) Nat Commun 4: 1355-1355

Released	2012-11-14
Method	X-RAY DIFFRACTION 3.969 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 3
Unique Ligands	MG, PAR, ZN

Explore in 3D

4DR5	Download File View File

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

(2013) Nat Commun 4: 1355-1355

Released	2012-11-14
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 3
Unique Ligands	MG, SRY, ZN

Explore in 3D

4DR6	Download File View File

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

(2013) Nat Commun 4: 1355-1355

Released	2012-11-14
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 5
Unique Ligands	MG, SRY, ZN

Explore in 3D

4DR7	Download File View File

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

(2013) Nat Commun 4: 1355-1355

Released	2012-11-14
Method	X-RAY DIFFRACTION 3.75 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 5
Unique Ligands	MG, SRY, ZN

Explore in 3D

4DUY	Download File View File

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

To be published

Released	2013-02-27
Method	X-RAY DIFFRACTION 3.386 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, ZN

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4DUZ	Download File View File

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C, bound with streptomycin

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

To be published

Released	2013-02-27
Method	X-RAY DIFFRACTION 3.651 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, SRY, ZN

Explore in 3D

4DV0	Download File View File

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

To be published

Released	2013-02-27
Method	X-RAY DIFFRACTION 3.853 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, ZN

Explore in 3D

4DV1	Download File View File

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

To be published

Released	2013-02-27
Method	X-RAY DIFFRACTION 3.849 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, SRY, ZN

Explore in 3D

4DV2	Download File View File

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

To be published

Released	2013-02-27
Method	X-RAY DIFFRACTION 3.646 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, ZN

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4DV3	Download File View File

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A, bound with streptomycin

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

To be published

Released	2013-02-27
Method	X-RAY DIFFRACTION 3.547 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, SRY, ZN

Explore in 3D

4DV4	Download File View File

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

To be published

Released	2013-02-27
Method	X-RAY DIFFRACTION 3.651 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, ZN

Explore in 3D

4DV5	Download File View File

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G, bound with streptomycin

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

To be published

Released	2013-02-27
Method	X-RAY DIFFRACTION 3.683 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, SRY, ZN

Explore in 3D

4DV6	Download File View File

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A915G

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

To be published

Released	2013-02-27
Method	X-RAY DIFFRACTION 3.297 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, ZN

Explore in 3D

4DV7	Download File View File

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A915G, bound with streptomycin

Demirci, H., Murphy IV, F., Murphy, E., Gregory, S.T., Dahlberg, A.E., Jogl, G.

To be published

Released	2013-02-27
Method	X-RAY DIFFRACTION 3.294 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, SRY, ZN

Explore in 3D

4JI0	Download File View File

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Demirci, H., Wang, L., Murphy IV, F., Murphy, E., Carr, J., Blanchard, S., Jogl, G., Dahlberg, A.E., Gregory, S.T.

(2013) RNA 19: 1791-1801

Released	2013-11-06
Method	X-RAY DIFFRACTION 3.492 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, ZN

Explore in 3D

4JI1	Download File View File

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Demirci, H., Wang, L., Murphy IV, F., Murphy, E., Carr, J., Blanchard, S., Jogl, G., Dahlberg, A.E., Gregory, S.T.

(2013) RNA 19: 1791-1801

Released	2013-11-06
Method	X-RAY DIFFRACTION 3.144 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, SRY, ZN

Explore in 3D

4JI4	Download File View File

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Demirci, H., Wang, L., Murphy IV, F., Murphy, E., Carr, J., Blanchard, S., Jogl, G., Dahlberg, A.E., Gregory, S.T.

(2013) RNA 19: 1791-1801

Released	2013-11-06
Method	X-RAY DIFFRACTION 3.692 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, ZN

Explore in 3D

4JI5	Download File View File

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Demirci, H., Wang, L., Murphy IV, F., Murphy, E., Carr, J., Blanchard, S., Jogl, G., Dahlberg, A.E., Gregory, S.T.

(2013) RNA 19: 1791-1801

Released	2013-11-06
Method	X-RAY DIFFRACTION 3.85 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, ZN

Explore in 3D

4JI6	Download File View File

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Demirci, H., Wang, L., Murphy IV, F., Murphy, E., Carr, J., Blanchard, S., Jogl, G., Dahlberg, A.E., Gregory, S.T.

(2013) RNA 19: 1791-1801

Released	2013-11-06
Method	X-RAY DIFFRACTION 3.55 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, ZN

Explore in 3D

4KVB	Download File View File

Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17

Murphy, E.L., Jogl, G.

To be published

Released	2014-06-04
Method	X-RAY DIFFRACTION 4.198 Å
Organisms	Thermus thermophilus HB27
Macromolecule	Unique protein chains: 19 Unique nucleic acid chains: 1
Unique Ligands	K, MG, ZN

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4LF4	Download File View File

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Demirci, H., Belardinelli, R., Carr, J., Murphy IV, F., Jogl, G., Dahlberg, A.E., Gregory, S.T.

(2013) To be published

Released	2014-07-02
Method	X-RAY DIFFRACTION 3.3421 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	K, LLL, MG, ZN

Explore in 3D

4LF5	Download File View File

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Demirci, H., Belardinelli, R., Carr, J., Murphy IV, F., Jogl, G., Dahlberg, A.E., Gregory, S.T.

(2013) To be published

Released	2014-07-02
Method	X-RAY DIFFRACTION 3.753 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	HYG, K, MG, ZN

1 to 25 of 189 Structures

Page 1 of 8

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