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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 534 Structures.

Refinements

Structure Determination Methodology

experimental (534)

Scientific Name of Source Organism

	Danio rerio (534)
	Escherichia coli K-12 (12)
	Escherichia coli O157:H7 (5)
	Eptatretus burgeri (3)
	Streptococcus pyogenes (2)
	Escherichia coli (1)
	Homo sapiens (1)
	Tequatrovirus T4 (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (534)
	Bacteria (20)
	Duplodnaviria (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (413)
	ELECTRON MICROSCOPY (112)
	SOLUTION NMR (9)

Polymer Entity Type

	Protein (525)
	DNA (8)
	RNA (1)

Refinement Resolution (Å)

	0.5 - 1.0 (5)
	1.0 - 1.5 (41)
	1.5 - 2.0 (116)
	2.0 - 2.5 (127)
	2.5 - 3.0 (101)
	3.0 - 3.5 (81)
	3.5 - 4.0 (29)
	4.0 - 4.5 (18)
	> 4.5 (7)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (45)
	2010 - 2014 (45)
	2015 - 2019 (201)
	2020 - 2024 (233)
	2025 - 2029 (8)

Enzyme Classification Name

	Hydrolases (98)
	Transferases (72)
	Oxidoreductases (6)
	Lyases (5)
	Isomerases (4)
	Ligases (3)

Membrane Protein Annotation

	PDBTM (84)
	OPM (77)
	mpstruc (73)
	MemProtMD (61)

Symmetry Type

	Asymmetric (345)
	Cyclic (182)
	Dihedral (17)

SCOP Classification

	Alpha and beta proteins (a/b) (62)
	All alpha proteins (16)
	All beta proteins (20)
	Artifacts (21)
	Alpha and beta proteins (a+b) (21)
	Small proteins (3)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 534 Structures

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1KQW: Entity 1	Download File View File

Crystal structure of holo-CRBP from zebrafish

Calderone, V., Folli, C., Marchesani, A., Berni, R., Zanotti, G.

(2002) J Mol Biology 321: 527-535

Released	2002-08-28
Method	X-RAY DIFFRACTION 1.38 Å
Chain ID	A
Organism	Danio rerio
Macromolecule	Cellular retinol-binding protein

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1KQX: Entity 1	Download File View File

Crystal structure of apo-CRBP from zebrafish

Calderone, V., Folli, C., Marchesani, A., Berni, R., Zanotti, G.

(2002) J Mol Biology 321: 527-535

Released	2002-08-28
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Danio rerio
Macromolecule	Cellular retinol-binding protein

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1Z3I: Entity 1	Download File View File

Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54

Thoma, N.H., Czyzewski, B.K., Alexeev, A.A., Mazin, A.V., Kowalczykowski, S.C., Pavletich, N.P.

(2005) Nat Struct Mol Biol 12: 350-356

Released	2005-04-05
Method	X-RAY DIFFRACTION 3 Å
Chain ID	A [auth X]
Organism	Danio rerio
Macromolecule	similar to RAD54-like

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2BE4: Entity 1	Download File View File

X-RAY STRUCTURE AN EF-HAND PROTEIN FROM DANIO RERIO Dr.36843

Wesenberg, G.E., Phillips Jr., G.N., Han, B.W., Bitto, E., Bingman, C.A., Bae, E., Center for Eukaryotic Structural Genomics (CESG)

(2009) Proteins 76: 477-483

Released	2005-11-01
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Danio rerio
Macromolecule	hypothetical protein LOC449832

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2F42: Entity 1	Download File View File

dimerization and U-box domains of Zebrafish C-terminal of HSP70 interacting protein

Xu, Z., Nix, J.C., Misra, S.

(2006) Biochemistry 45: 4749-4759

Released	2006-05-02
Method	X-RAY DIFFRACTION 2.5 Å
Chain ID	A
Organism	Danio rerio
Macromolecule	STIP1 homology and U-box containing protein 1

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2FB7: Entity 1	Download File View File

NMR Solution Structure of protein from Zebra Fish Dr.13312

Tyler, R.C., Song, J., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

To be published

Released	2005-12-27
Method	SOLUTION NMR
Chain ID	A
Organism	Danio rerio
Macromolecule	Sm-like protein, LSm-14_N (RAP55)

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2H1X: Entity 1	Download File View File

Crystal structure of 5-hydroxyisourate Hydrolase (formerly known as TRP, Transthyretin Related Protein)

Zanotti, G., Cendron, L., Folli, C., Ramazzina, I., Percudani, R., Berni, R.

(2006) J Mol Biology 363: 1-9

Released	2006-10-31
Method	X-RAY DIFFRACTION 1.98 Å
Chain IDs	A, B, C, D
Organism	Danio rerio
Macromolecule	5-hydroxyisourate Hydrolase (formerly known as TRP, Transthyretin Related Protein)

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2H6U: Entity 1	Download File View File

Crystal structure of 5-hydroxyisourate hydrolase (formerly known as TRP, transthyretin related protein)

Zanotti, G., Cendron, L., Folli, C., Ramazzina, I., Percudani, R., Berni, R.

(2006) J Mol Biology 363: 1-9

Released	2006-10-31
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	A, B, F, G, H
Organism	Danio rerio
Macromolecule	5-HYDROXYISOURATE HYDROLASE (FORMERLY KNOWN AS TRP, TRANSTHYRETIN RELATED PROTEIN)

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2HBH: Entity 1	Download File View File

Crystal structure of Vitamin D nuclear receptor ligand binding domain bound to a locked side-chain analog of calcitriol and SRC-1 peptide

Rochel, N., Hourai, S., Moras, D.

(2007) Arch Biochem Biophys 460: 172-176

Released	2007-05-01
Method	X-RAY DIFFRACTION 2.65 Å
Chain ID	A
Organism	Danio rerio
Macromolecule	Vitamin D receptor

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2HC4: Entity 1	Download File View File

Crystal structure of the LBD of VDR of Danio rerio in complex with calcitriol

Ciesielski, F., Rochel, N., Moras, D.

(2007) J Steroid Biochem Mol Biol 103: 235-242

Released	2007-05-01
Method	X-RAY DIFFRACTION 2.2 Å
Chain ID	A
Organism	Danio rerio
Macromolecule	Vitamin D receptor

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2HCD: Entity 1	Download File View File

Crystal structure of the ligand binding domain of the Vitamin D nuclear receptor in complex with Gemini and a coactivator peptide

Ciesielski, F., Rochel, N., Moras, D.

(2007) J Steroid Biochem Mol Biol 103: 235-242

Released	2007-05-01
Method	X-RAY DIFFRACTION 2.6 Å
Chain ID	A
Organism	Danio rerio
Macromolecule	Vitamin D receptor

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2I2O: Entity 1	Download File View File

Crystal Structure of an eIF4G-like Protein from Danio rerio

Bitto, E., Wesenberg, G.E., Phillips Jr., G.N., Mccoy, J.G., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)

(2010) Proteins 78: 1803-1806

Released	2006-08-29
Method	X-RAY DIFFRACTION 1.92 Å
Chain IDs	A, B
Organism	Danio rerio
Macromolecule	eIF4G-like protein

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2IFU: Entity 1	Download File View File

Crystal Structure of a Gamma-SNAP from Danio rerio

Bitto, E., Wesenberg, G.E., Phillips Jr., G.N., Mccoy, J.G., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)

(2008) Proteins 70: 93-104

Released	2006-10-10
Method	X-RAY DIFFRACTION 2.6 Å
Chain IDs	A, B, C, D
Organism	Danio rerio
Macromolecule	gamma-snap

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2J3R: Entity 2	Download File View File

The crystal structure of the bet3-trs31 heterodimer.

Kim, Y.-G., Oh, B.-H.

(2006) Cell 127: 817

Released	2006-11-27
Method	X-RAY DIFFRACTION 2.6 Å
Chain ID	B
Organism	Danio rerio
Macromolecule	ZGC 92866

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2J3W: Entity 2	Download File View File

The crystal structure of the bet3-trs31-sedlin complex.

Kim, Y.-G., Oh, B.-H.

(2006) Cell 127: 817

Released	2006-11-27
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	B, F
Organism	Danio rerio
Macromolecule	ZGC 92866

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2K0S: Entity 1	Download File View File

Solution NMR structure of protein BC066483

Cornilescu, C.C., Loushin-Newman, C.L., Vinarov, D.A., Markley, J.L., Center for Eukaryotic Structural Genomics (CESG)

To be published

Released	2008-03-25
Method	SOLUTION NMR
Chain ID	A
Organism	Danio rerio
Macromolecule	ADP-ribosylation factor-like protein 2-binding protein

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2NXF: Entity 1	Download File View File

Crystal Structure of a dimetal phosphatase from Danio rerio LOC 393393

Bitto, E., Wesenberg, G.E., Phillips Jr., G.N., McCoy, J.G., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)

To be published

Released	2006-12-12
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Danio rerio
Macromolecule	Putative dimetal phosphatase

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2O3C: Entity 1	Download File View File

Crystal structure of zebrafish Ape

Georgiadis, M.M., Gaur, R.K., Delaplane, S., Svenson, J.

(2008) Mutat Res 643: 54-63

Released	2007-12-11
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	A, B, C
Organism	Danio rerio
Macromolecule	APEX nuclease 1

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2O70: Entity 1	Download File View File

Structure of OHCU decarboxylase from zebrafish

Cendron, L., Berni, R., Folli, C., Ramazzina, I., Percudani, R., Zanotti, G.

(2007) J Biological Chem 282: 18182-18189

Released	2007-04-10
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A, B, C, D, E
Organism	Danio rerio
Macromolecule	OHCU decarboxylase

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2O73: Entity 1	Download File View File

Structure of OHCU decarboxylase in complex with allantoin

Cendron, L., Berni, R., Folli, C., Ramazzina, I., Percudani, R., Zanotti, G.

(2007) J Biological Chem 282: 18182-18189

Released	2007-04-10
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A, B, E, C, D
Organism	Danio rerio
Macromolecule	OHCU decarboxylase

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2O74: Entity 1	Download File View File

Structure of OHCU decarboxylase in complex with guanine

Cendron, L., Berni, R., Folli, C., Ramazzina, I., Percudani, R., Zanotti, G.

(2007) J Biological Chem 282: 18182-18189

Released	2007-04-10
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A, B, C, E, F
Organism	Danio rerio
Macromolecule	OHCU decarboxylase

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2OXQ: Entity 1	Download File View File

Structure of the UbcH5 :CHIP U-box complex

Xu, Z., Nix, J.C., Devlin, K.I., Misra, S.

(2008) BMC Struct Biol 8: 26-26

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.9 Å
Chain IDs	A, B
Organism	Danio rerio
Macromolecule	Ubiquitin-conjugating enzyme E2D 1

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2OXQ: Entity 2	Download File View File

Structure of the UbcH5 :CHIP U-box complex

Xu, Z., Nix, J.C., Devlin, K.I., Misra, S.

(2008) BMC Struct Biol 8: 26-26

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.9 Å
Chain IDs	C, D
Organism	Danio rerio
Macromolecule	STIP1 homology and U-Box containing protein 1

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2Q4U: Entity 1	Download File View File

Ensemble refinement of the crystal structure of an EF-hand protein from Danio rerio Dr.36843

Levin, E.J., Kondrashov, D.A., Wesenberg, G.E., Phillips Jr., G.N., Center for Eukaryotic Structural Genomics (CESG)

(2007) Structure 15: 1040-1052

Released	2007-06-19
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Danio rerio
Macromolecule	Protein Zgc:100843

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2QO4: Entity 1	Download File View File

Crystal structure of zebrafish liver bile acid-binding protein complexed with cholic acid

Capaldi, S., Saccomani, G., Perduca, M., Monaco, H.L.

(2007) J Biological Chem 282: 31008-31018

Released	2007-07-31
Method	X-RAY DIFFRACTION 1.5 Å
Chain ID	A
Organism	Danio rerio
Macromolecule	Liver-basic fatty acid binding protein

1 to 25 of 534 Structures

Page 1 of 22

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