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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 137 Structures.

Refinements

Structure Determination Methodology

experimental (137)

Scientific Name of Source Organism

	synthetic construct (53)
	Homo sapiens (50)
	Gallus gallus (7)
	Staphylococcus aureus (5)
	Oldenlandia affinis (3)
	Pseudomonas aeruginosa (3)
	Viola odorata (3)
	Eleftheria terrae (2)
	Pigea enneasperma (2)
	Pseudomonas aeruginosa PAO1 (2)

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Taxonomy

	Eukaryota (72)
	other sequences (54)
	Bacteria (26)
	Eukaryota (eukaryotes) (2)
	Riboviria (2)
	Duplodnaviria (1)
	Riboviria (RNA viruses and viroids) (1)
	unclassified bacterial viruses (1)

Experimental Method

	X-RAY DIFFRACTION (115)
	SOLUTION NMR (20)
	SOLID-STATE NMR (2)

Polymer Entity Type

Protein (137)

Refinement Resolution (Å)

	0.5 - 1.0 (5)
	1.0 - 1.5 (39)
	1.5 - 2.0 (33)
	2.0 - 2.5 (25)
	2.5 - 3.0 (13)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (9)
	2005 - 2009 (9)
	2010 - 2014 (25)
	2015 - 2019 (42)
	2020 - 2024 (45)
	2025 - 2029 (6)

Enzyme Classification Name

	Transferases (11)
	Hydrolases (6)
	Lyases (4)
	Ligases (3)

Membrane Protein Annotation

OPM (4)

Symmetry Type

	Asymmetric (82)
	Cyclic (25)
	Dihedral (4)

SCOP Classification

	All beta proteins (5)
	Alpha and beta proteins (a+b) (3)
	Coiled coil proteins (3)
	Peptides (3)
	Artifacts (1)

AllSelected

1 to 25 of 137 Structures

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1C4B	Download File View File

A BETA-HAIRPIN MIMIC FROM FCERI-ALPHA-CYCLO(RD-262)

Mcdonnell, J.M., Fushman, D., Cahill, S.M., Sutton, B.J., Cowburn, D.

(1997) J Am Chem Soc 119: 5321-5328

Released	1999-08-25
Method	SOLUTION NMR
Macromolecule	PROTEIN (CYCLO(RD-262)) (protein)

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1CVQ	Download File View File

SOLUTION STRUCTURE OF THE ANALOGUE RETRO-INVERSO MGREGRIGGC IN CONTACT WITH THE MONOCLONAL ANTIBODY MAB 4X11, NMR, 7 STRUCTURES

Phan Chan Du, A., Petit, M.C., Guichard, G., Briand, J.P., Muller, S., Cung, M.T.

(2001) Biochemistry 40: 5720-5727

Released	1999-09-02
Method	SOLUTION NMR
Macromolecule	HISTONE H3 (protein)

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1CW8	Download File View File

SOLUTION STRUCTURE OF THE ANALOGUE RETRO-INVERSO (mA-R)REGRIGGC IN CONTACT WITH THE MONOCLONAL ANTIBODY MAB 4X11, NMR, 6 STRUCTURES

Phan Chan Du, A., Petit, M.C., Guichard, G., Briand, J.P., Muller, S., Cung, T.

(2001) Biochemistry 40: 5720-5727

Released	1999-09-03
Method	SOLUTION NMR
Macromolecule	HISTONE H3 (protein)
Unique Ligands	DXX

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1CWZ	Download File View File

Solution structure of the analogue retro-inverso (MA-S)REGRIGGC in contact with the monoclonal antibody MAB 4X11, NMR, 7 structures

Phan Chan Du, A., Petit, M.C., Guichard, G., Briand, J.P., Muller, S., Cung, M.T.

(2001) Biochemistry 40: 5720-5727

Released	1999-09-03
Method	SOLUTION NMR
Macromolecule	HISTONE H3 (protein)
Unique Ligands	DXX

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1CZQ	Download File View File

CRYSTAL STRUCTURE OF THE D10-P1/IQN17 COMPLEX: A D-PEPTIDE INHIBITOR OF HIV-1 ENTRY BOUND TO THE GP41 COILED-COIL POCKET.

Eckert, D.M., Malashkevich, V.N., Hong, L.H., Carr, P.A., Kim, P.S.

(1999) Cell 99: 103-115

Released	1999-10-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Human immunodeficiency virus Saccharomyces cerevisiae
Macromolecule	D-PEPTIDE INHIBITOR (protein) FUSION PROTEIN BETWEEN THE HYDROPHOBIC POCKET OF HIV GP41 AND GCN4-PIQI (protein)
Unique Ligands	CL

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1HBT	Download File View File

Human alpha-thrombin complexed with a peptidyl pyridinium methyl ketone containing bivalent inhibitor

Rehse, P.H., Cygler, M.

(1995) Biochemistry 34: 11537-11544

Released	1995-07-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) P596 Inhibitor peptide (protein)

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1MCK	Download File View File

PRINCIPLES AND PITFALLS IN DESIGNING SITE DIRECTED PEPTIDE LIGANDS

Edmundson, A.B., Harris, D.L., Fan, Z.-C., Guddat, L.W.

(1993) Proteins 16: 246-267

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN) (protein) PEPTIDE N-ACETYL-D-GLU-L-HIS-D-PRO-NH2 (protein)

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1QUR	Download File View File

HUMAN ALPHA-THROMBIN IN COMPLEX WITH BIVALENT, BENZAMIDINE-BASED SYNTHETIC INHIBITOR

Renatus, M., Steinmetzer, T.

(1999) Eur J Biochem 265: 598-605

Released	1999-10-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	BIVALENT INHIBITOR (BZA-2 HIRULOG) (protein) HUMAN THROMBIN (ALPHA CHAIN) (protein) HUMAN THROMBIN (BETA CHAIN) (protein)

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2AIZ	Download File View File

Solution structure of peptidoglycan associated lipoprotein from Haemophilus influenza bound to UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

Parsons, L.M., Lin, F., Orban, J., Structure 2 Function Project (S2F)

(2006) Biochemistry 45: 2122-2128

Released	2006-03-14
Method	SOLUTION NMR
Organisms	Haemophilus influenzae synthetic construct
Macromolecule	L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine (protein) Outer membrane protein P6 (Fragment) (protein)
Unique Ligands	AMU, UDP

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2JUE	Download File View File

Solution structure of the all-D kalata B1

Daly, N.L., Sando, L., Craik, D.

(2011) Chembiochem 12: 2456-2462

Released	2008-08-05
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Kalata-B1 (protein)

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2KJU	Download File View File

NMR structure of human insulin mutant glu-b21-d-glu, his-b10 asp pro-b28-lys, lys-b29-pro, 20 structures

Hua, Q.X., Huang, K., Hu, S.Q., Katsoyanni, P., Weiss, M.A.

To be published

Released	2010-06-16
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Insulin (protein)

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2KQL	Download File View File

Maurocalcine in D configuration from Scorpio maurus palmatus

Dridi, K., Bernard, C., Darbon, H.

To be published

Released	2010-07-07
Method	SOLUTION NMR
Macromolecule	D-MAUROCALCINE (protein)

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2Q33	Download File View File

Crystal structure of all-D monellin at 1.8 A resolution

Hung, L.-W., Kohmura, M., Ariyoshi, Y., Kim, S.-H.

(1998) Acta Crystallogr D Biol Crystallogr 54: 494-500

Released	2007-11-13
Method	X-RAY DIFFRACTION 1.8 Å
Macromolecule	D-MONELLIN CHAIN A (protein) D-MONELLIN CHAIN B (protein)

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2Q3I	Download File View File

Crystal structure of the D10-P3/IQN17 complex: a D-peptide inhibitor of HIV-1 entry bound to the GP41 coiled-coil pocket

Malashkevich, V.N., Eckert, D.M., Hong, L.H., Carr, P.A., Kim, P.S.

(1999) Cell 99: 103-105

Released	2007-06-12
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Human immunodeficiency virus type 1
Macromolecule	D-peptide (protein) Fusion protein between the Coiled-Coil pocket of HIV GP41 and gcn4-PIQI (protein)
Unique Ligands	CL

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2R3C	Download File View File

Structure of the gp41 N-peptide in complex with the HIV entry inhibitor PIE1

VanDemark, A.P., Welch, B., Heroux, A., Hill, C.P., Kay, M.S.

(2007) Proc Natl Acad Sci U S A 104: 16828-16833

Released	2007-10-02
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	synthetic construct
Macromolecule	HIV entry inhibitor PIE1 (protein) gp41 N-peptide (protein)
Unique Ligands	CL, YT3

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2R5B	Download File View File

Structure of the gp41 N-trimer in complex with the HIV entry inhibitor PIE7

VanDemark, A.P., Welch, B., Heroux, A., Hill, C.P., Kay, M.S.

(2007) Proc Natl Acad Sci U S A 104: 16828-16833

Released	2007-10-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	synthetic construct
Macromolecule	HIV entry inhibitor PIE7 (protein) gp41 N-peptide (protein)
Unique Ligands	SO4

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2R5D	Download File View File

Structure of the gp41 N-trimer in complex with the HIV entry inhibitor PIE7

VanDemark, A.P., Welch, B., Heroux, A., Hill, C.P., Kay, M.S.

(2007) Proc Natl Acad Sci U S A 104: 16828-16833

Released	2007-10-02
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	synthetic construct
Macromolecule	HIV entry inhibitor PIE7 (protein) gp41 N-peptide (protein)
Unique Ligands	EPE, GOL, SO4

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3FHV	Download File View File

Structural basis of Salmonella typhi type IVb PilS and cystic fibrosis transmembrane conductance regulator (CFTR) interaction

Balakrishna, A.M., Swaminathan, K.

(2009) Proteins 77: 253-261

Released	2009-10-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhi
Macromolecule	Prepilin (protein) cftr peptide (protein)

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3GO0	Download File View File

Crystal structure of D-enantiomer of human alpha-defensin 1 (D-HNP1)

Pazgier, M., Lu, W.-Y.

(2009) J Biological Chem 284: 29180-29192

Released	2009-07-28
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil defensin 1 (protein)
Unique Ligands	CL

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3IWY	Download File View File

Crystal structure of human MDM2 complexed with D-peptide (12 residues)

Pazgier, M., Lu, W.

(2010) Proc Natl Acad Sci U S A 398: 200-213

Released	2010-04-21
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Homo sapiens
Macromolecule	D-peptide inhibitor (protein) E3 ubiquitin-protein ligase Mdm2 (protein)

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3L35	Download File View File

PIE12 D-peptide against HIV entry

Welch, B.D., Redman, J.S., Paul, S., Whitby, F.G., Weinstock, M.T., Reeves, J.D., Lie, Y.S., Eckert, D.M., Hill, C.P., Root, M.J., Kay, M.S.

(2010) J Virol 84: 11235-11244

Released	2010-11-03
Method	X-RAY DIFFRACTION 1.55 Å
Macromolecule	GP41 N-PEPTIDE (protein) HIV ENTRY INHIBITOR PIE12 (protein)

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3L36	Download File View File

PIE12 D-peptide against HIV entry

Welch, B.D., Redman, J.S., Paul, S., Whitby, F.G., Weinstock, M.T., Reeves, J.D., Lie, Y.S., Eckert, D.M., Hill, C.P., Root, M.J., Kay, M.S.

(2010) J Virol 84: 11235-11244

Released	2010-11-03
Method	X-RAY DIFFRACTION 1.45 Å
Macromolecule	GP41 N-PEPTIDE (protein) HIV ENTRY INHIBITOR PIE12 (protein)
Unique Ligands	CXS

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3L37	Download File View File

PIE12 D-peptide against HIV entry

Welch, B.D., Redman, J.S., Paul, S., Whitby, F.G., Weinstock, M.T., Reeves, J.D., Lie, Y.S., Eckert, D.M., Hill, C.P., Root, M.J., Kay, M.S.

(2010) J Virol 84: 11235-11244

Released	2010-11-03
Method	X-RAY DIFFRACTION 1.45 Å
Macromolecule	GP41 N-PEPTIDE (protein) HIV ENTRY INHIBITOR PIE12 (protein)

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3LNJ	Download File View File

Crystal structure of human MDM2 in complex with D-peptide inhibitor (DPMI-alpha)

Pazgier, M., Lu, W.

(2010) Angew Chem Int Ed Engl 49: 3649-3652

Released	2010-03-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	D-peptide inhibitor (protein) E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	CL, GOL, SO4

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3MGN	Download File View File

D-Peptide inhibitor PIE71 in complex with IQN17

Hill, C.P., Whitby, F.G., Kay, M., Francis, N.

(2010) J Virol 84: 11235-11244

Released	2011-03-02
Method	X-RAY DIFFRACTION 1.4 Å
Macromolecule	D-PEPTIDE INHIBITOR PIE71 (protein) IQN17 (protein)

1 to 25 of 137 Structures

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