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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 19053272

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (5)
	Homo sapiens (4)
	Klebsiella pneumoniae subsp. ozaenae (3)
	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (1)
	Japanese encephalitis virus (1)

Taxonomy

	Riboviria (6)
	Bacteria (4)
	Eukaryota (4)

Experimental Method

	ELECTRON MICROSCOPY (6)
	X-RAY DIFFRACTION (4)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (2)
	3.0 - 3.5 (1)
	3.5 - 4.0 (4)
	4.0 - 4.5 (1)

Release Date

	2015 - 2019 (1)
	2020 - 2024 (9)

Enzyme Classification Name

Hydrolases (4)

Symmetry Type

	Asymmetric (3)
	Cyclic (3)
	Dihedral (3)
	Icosahedral (1)

AllSelected

1 to 10 of 10 Structures

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5WSN	Download File View File

Structure of Japanese encephalitis virus

Wang, X., Zhu, L., Li, S., Yuan, S., Qin, C., Fry, E.E., Stuart, I.D., Rao, Z.

(2017) Nat Commun 8: 14-14

Released	2017-05-17
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Japanese encephalitis virus
Macromolecule	E protein (protein) M protein (protein)

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7CAB	Download File View File

Structural basis for neutralization of SARS-CoV-2 and SARS-CoV by a potent therapeutic antibody

Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Wang, Y., Rao, Z., Qin, C., Wang, X.

(2020) Science 369: 1505-1509

Released	2020-12-16
Method	ELECTRON MICROSCOPY 3.52 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7CAC	Download File View File

SARS-CoV-2 S trimer with one RBD in the open state and complexed with one H014 Fab.

Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Wang, Y., Rao, Z., Qin, C., Wang, X.

(2020) Science 369: 1505-1509

Released	2021-02-24
Method	ELECTRON MICROSCOPY 3.55 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of H014 Fab (protein) Light chain of H014 Fab (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7CAH	Download File View File

The interface of H014 Fab binds to SARS-CoV-2 S

Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Rao, Z., wang, Y., Qin, C., Wang, X.

(2020) Science 369: 1505-1509

Released	2020-08-12
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of H014 Fab (protein) Light chain of H014 Fab (protein) Spike protein S1 (protein)

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7CAI	Download File View File

SARS-CoV-2 S trimer with two RBDs in the open state and complexed with two H014 Fab

Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Wang, Y., Rao, Z., Qin, C., Wang, X.

(2020) Science 369: 1505-1509

Released	2020-09-23
Method	ELECTRON MICROSCOPY 3.49 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of H014 Fab (protein) Light chain of H014 Fab (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7CAK	Download File View File

SARS-CoV-2 S trimer with three RBD in the open state and complexed with three H014 Fab

Zhe, L., Cao, L., Deng, Y., Sun, Y., Wang, N., Xie, L., Wang, Y., Rao, Z., Qin, C., Wang, X.

(2020) Science 369: 1505-1509

Released	2020-09-23
Method	ELECTRON MICROSCOPY 3.58 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of H014 Fab (protein) Light chain of H014 Fab (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7XHJ	Download File View File

Crystal structure of RuvC from Deinococcus radiodurans

Qin, C., Zhao, Y.

(2022) Microorganisms 10:

Released	2022-07-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Macromolecule	Crossover junction endodeoxyribonuclease RuvC (protein)

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9GLB	Download File View File

Crystal Structure of Deacetylase (HdaH) from Klebsiella pneumoniae subsp. ozaenae

Qin, C., Graf, L.G., Schulze, S., Palm, G.J., Lammers, M.

(2024) Nat Commun 15: 9496-9496

Released	2024-11-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Klebsiella pneumoniae subsp. ozaenae
Macromolecule	Deacetylase (protein)
Unique Ligands	ACT, GOL, K, ZN

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9GN6	Download File View File

Crystal Structure of Deacetylase (HdaH) from Klebsiella pneumoniae subsp. ozaenae in complex with the inhibitor SAHA

Qin, C., Graf, L.G., Schulze, S., Palm, G.J., Lammers, M.

(2024) Nat Commun 15: 9496-9496

Released	2024-11-06
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Klebsiella pneumoniae subsp. ozaenae
Macromolecule	Deacetylase (protein)
Unique Ligands	K, SHH, ZN

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9GN7	Download File View File

Crystal Structure of Deacetylase (HdaH) from Klebsiella pneumoniae subsp. ozaenae in Complex with the inhibitor TSA

Qin, C., Graf, L.G., Schulze, S., Palm, G.J., Lammers, M.

(2024) Nat Commun 15: 9496-9496

Released	2024-11-06
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Klebsiella pneumoniae subsp. ozaenae
Macromolecule	Deacetylase (protein)
Unique Ligands	GOL, K, PO4, TSN, ZN

1 to 10 of 10 Structures

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