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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 25412658

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Search Summary

This query matches 28 Structures.

Refinements

Structure Determination Methodology

experimental (28)

Scientific Name of Source Organism

Homo sapiens (28)

Taxonomy

Eukaryota (28)

Experimental Method

X-RAY DIFFRACTION (28)

Polymer Entity Type

Protein (28)

Refinement Resolution (Å)

	1.0 - 1.5 (20)
	1.5 - 2.0 (8)

Release Date

2020 - 2024 (28)

Symmetry Type

Asymmetric (28)

AllSelected

1 to 25 of 28 Structures

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7YXE	Download File View File

Crystal structure of YTHDF2 with compound ZA_143

Nai, F., Zalesak, F., Li, Y., Caflisch, A.

(2022) ACS Med Chem Lett 13: 1500-1509

Released	2022-03-02
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing family protein 2 (protein)
Unique Ligands	GOL, I82, NA, SO4

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7Z8P	Download File View File

Crystal structure of YTHDF2 with compound ZA_166

Nai, F., Zalesak, F., Li, Y., Caflisch, A.

(2022) ACS Med Chem Lett 13: 1500-1509

Released	2022-03-30
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing family protein 2 (protein)
Unique Ligands	GOL, IFZ, SO4

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8Q2R	Download File View File

Crystal structure of YTHDC1 in complex with Compound 3 (ZA_431)

Bedi, R.K., Zalesak, F., Li, Y., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	ITJ, SO4

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8Q2S	Download File View File

Crystal structure of YTHDC1 in complex with Compound 4 (ZA_232)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	IU2, SO4

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8Q2T	Download File View File

Crystal structure of YTHDC1 in complex with Compound 5 (ZA_236)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	IUA, SO4

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8Q2U	Download File View File

Crystal structure of YTHDC1 in complex with Compound 6 (ZA_308)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	IUH, SO4

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8Q2V	Download File View File

Crystal structure of YTHDC1 in complex with Compound 7 (ZA_560)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	IUQ, SO4

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8Q2W	Download File View File

Crystal structure of YTHDC1 in complex with Compound 8 (CS_01)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	IUZ, SO4

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8Q2X	Download File View File

Crystal structure of YTHDC1 in complex with Compound 10 (ZA_294)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	IV6, SO4

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8Q2Y	Download File View File

Crystal structure of YTHDC1 in complex with Compound 11 (ZA_572)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	IVI, SO4

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8Q31	Download File View File

Crystal structure of YTHDC1 in complex with Compound 12 (ZA_341)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	IVR, SO4

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8Q32	Download File View File

Crystal structure of YTHDC1 in complex with Compound 13 (ZA_364)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	IW0, SO4

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8Q33	Download File View File

Crystal structure of YTHDC1 in complex with Compound 15 (ZA_343)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	IWV, SO4

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8Q35	Download File View File

Crystal structure of YTHDC1 in complex with Compound 16 (ZA_354)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.31 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	IWM, SO4

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8Q37	Download File View File

Crystal structure of YTHDC1 in complex with Compound 18 (ZA_312)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.28 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	IWF, SO4

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8Q38	Download File View File

Crystal structure of YTHDC1 in complex with Compound 19 (ZA_347)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	IZJ, SO4

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8Q39	Download File View File

Crystal structure of YTHDC1 in complex with Compound 21 (ZA_515)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	K1O, SO4

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8Q3A	Download File View File

Crystal structure of YTHDC1 in complex with Compound 22 (ZA_393)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	IYQ, SO4

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8Q3G	Download File View File

Crystal structure of YTHDC1 in complex with Compound 23 (ZA_385)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	J7L, SO4

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8Q4M	Download File View File

Crystal structure of YTHDC1 in complex with Compound 25 (ZA_349)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	J9B, SO4

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8Q4N	Download File View File

Crystal structure of YTHDC1 in complex with Compound 26 (ZA_513)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	JIR, SO4

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8Q4P	Download File View File

Crystal structure of YTHDC1 in complex with Compound 27 (ZA_309)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	JII, SO4

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8Q4Q	Download File View File

Crystal structure of YTHDC1 in complex with Compound 29 (ZA_337)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	JIB, SO4

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8Q4R	Download File View File

Crystal structure of YTHDC1 in complex with Compound 30 (ZA_326)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	JHU, SO4

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8Q4T	Download File View File

Crystal structure of YTHDC1 in complex with Compound 31 (ZA_400)

Bedi, R.K., Zalesak, F., Caflisch, A.

(2024) J Med Chem 67: 9516-9535

Released	2023-12-06
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Homo sapiens
Macromolecule	YTH domain-containing protein 1 (protein)
Unique Ligands	JBD, SO4

1 to 25 of 28 Structures

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