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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 25506719

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This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Pyrococcus furiosus DSM 3638 (4)
	Homo sapiens (2)
	Escherichia coli K-12 (1)
	Japanese encephalitis virus (1)
	Japanese encephalitis virus strain Nakayama (1)
	Neurospora crassa (1)
	Thermus thermophilus HB27 (1)
	synthetic construct (1)

Taxonomy

	Archaea (4)
	Eukaryota (3)
	Bacteria (2)
	Riboviria (1)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (10)

Polymer Entity Type

	Protein (10)
	DNA (1)

Refinement Resolution (Å)

	2.0 - 2.5 (8)
	2.5 - 3.0 (2)

Release Date

	2010 - 2014 (9)
	2015 - 2019 (1)

Enzyme Classification Name

	Transferases (2)
	Hydrolases (2)
	Lyases (2)
	Isomerases (1)
	Oxidoreductases (1)

Membrane Protein Annotation

	MemProtMD (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (6)
	Cyclic (3)
	Dihedral (1)

SCOP Classification

	All beta proteins (2)
	All alpha proteins (1)
	Alpha and beta proteins (a+b) (1)
	Alpha and beta proteins (a/b) (1)

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1 to 10 of 10 Structures

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4PGO \| pdb_00004pgo	Download File View File

Crystal structure of hypothetical protein PF0907 from Pyrococcus furiosus solved by sulfur SAD using Swiss Light Source data

Weinert, T., Waltersperger, S., Olieric, V., Panepucci, E., Chen, L., Rose, J.P., Wang, M., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)

(2015) Nat Methods 12: 131-133

Released	2014-12-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	CL

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4PII \| pdb_00004pii	Download File View File

Crystal structure of hypothetical protein PF0907 from pyrococcus furiosus solved by sulfur SAD using Swiss light source data

Weinert, T., Waltersperger, S., Olieric, V., Panepucci, E., Chen, L., Rose, J.P., Wang, M., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)

(2015) Nat Methods 12: 131-133

Released	2014-12-10
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	N-glycosylase/DNA lyase (protein)
Unique Ligands	CL, IMD

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4R8T \| pdb_00004r8t	Download File View File

Structure of JEV protease

Nair, D.T., Weinert, T., Wang, M., Olieric, V.

(2015) Nat Methods 12: 131-133

Released	2014-12-24
Method	X-RAY DIFFRACTION 2.133 Å
Organisms	Japanese encephalitis virus Japanese encephalitis virus strain Nakayama
Macromolecule	NS3 (protein) Serine protease subunit NS2B (protein)
Unique Ligands	CL

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4R8U \| pdb_00004r8u	Download File View File

S-SAD structure of DINB-DNA Complex

Kottur, J., Nair, D.T., Weinert, T., Oligeric, V., Wang, M.

(2015) Nat Methods 12: 131-133

Released	2015-01-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DNA polymerase IV (protein) DNA (nucleic acid)
Unique Ligands	1FZ, MG

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4TN8 \| pdb_00004tn8	Download File View File

Crystal structure of Thermus Thermophilus thioredoxin solved by sulfur SAD using Swiss Light Source data

Weinert, T., Waltersperger, S., Olieric, V., Panepucci, E., Chen, L., Rose, J.P., Wang, M., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)

(2015) Nat Methods 12: 131-133

Released	2014-12-10
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Thermus thermophilus HB27
Macromolecule	Thioredoxin (protein)
Unique Ligands	CL

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4TNO \| pdb_00004tno	Download File View File

Hypothetical protein PF1117 from Pyrococcus Furiosus: Structure solved by sulfur-SAD using Swiss Light Source Data

Weinert, T., Waltersperger, S., Olieric, V., Panepucci, E., Chen, L., Rose, J.P., Wang, M., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)

(2015) Nat Methods 12: 131-133

Released	2014-12-10
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	CRISPR-associated endoribonuclease Cas2 (protein)
Unique Ligands	CL

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4WAB \| pdb_00004wab	Download File View File

Crystal structure of mPGES1 solved by native-SAD phasing

Weinert, T., Li, D., Howe, N., Caffrey, M., Wang, M.

(2015) Nat Methods 12: 131-133

Released	2014-12-10
Method	X-RAY DIFFRACTION 2.704 Å
Organisms	Homo sapiens
Macromolecule	Prostaglandin E synthase,Leukotriene C4 synthase (protein)
Unique Ligands	GSH, LVJ

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4WAU \| pdb_00004wau	Download File View File

Crystal structure of CENP-M solved by native-SAD phasing

Weinert, T., Basilico, F., Cecatiello, V., Pasqualato, S., Wang, M.

(2015) Nat Methods 12: 131-133

Released	2014-12-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Centromere protein M (protein)

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4WBQ \| pdb_00004wbq	Download File View File

Crystal structure of the exonuclease domain of QIP (QDE-2 interacting protein) solved by native-SAD phasing.

Boland, A., Weinert, T., Weichenrieder, O., Wang, M.

(2015) Nat Methods 12: 131-133

Released	2014-12-10
Method	X-RAY DIFFRACTION 2.693 Å
Organisms	Neurospora crassa
Macromolecule	QDE-2-interacting protein (protein)
Unique Ligands	CA

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4WBX \| pdb_00004wbx	Download File View File

Conserved hypothetical protein PF1771 from Pyrococcus furiosus solved by sulfur SAD using Swiss Light Source data

Weinert, T., Waltersperger, S., Olieric, V., Panepucci, E., Chen, L., Rose, J.P., Wang, M., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)

(2015) Nat Methods 12: 131-133

Released	2014-12-10
Method	X-RAY DIFFRACTION 2.301 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	2-keto acid:ferredoxin oxidoreductase subunit alpha (protein)

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4PGO | pdb_00004pgo

Crystal structure of hypothetical protein PF0907 from Pyrococcus furiosus solved by sulfur SAD using Swiss Light Source data

4PII | pdb_00004pii

Crystal structure of hypothetical protein PF0907 from pyrococcus furiosus solved by sulfur SAD using Swiss light source data

4R8T | pdb_00004r8t

Structure of JEV protease

4R8U | pdb_00004r8u

S-SAD structure of DINB-DNA Complex

4TN8 | pdb_00004tn8

Crystal structure of Thermus Thermophilus thioredoxin solved by sulfur SAD using Swiss Light Source data

4TNO | pdb_00004tno

Hypothetical protein PF1117 from Pyrococcus Furiosus: Structure solved by sulfur-SAD using Swiss Light Source Data

4WAB | pdb_00004wab

Crystal structure of mPGES1 solved by native-SAD phasing

4WAU | pdb_00004wau

Crystal structure of CENP-M solved by native-SAD phasing

4WBQ | pdb_00004wbq

Crystal structure of the exonuclease domain of QIP (QDE-2 interacting protein) solved by native-SAD phasing.

4WBX | pdb_00004wbx

Conserved hypothetical protein PF1771 from Pyrococcus furiosus solved by sulfur SAD using Swiss Light Source data

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

4PGO | pdb_00004pgo

4PII | pdb_00004pii

4R8T | pdb_00004r8t

4R8U | pdb_00004r8u

4TN8 | pdb_00004tn8

4TNO | pdb_00004tno

4WAB | pdb_00004wab

4WAU | pdb_00004wau

4WBQ | pdb_00004wbq

4WBX | pdb_00004wbx