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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 29882741

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Search Summary

This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (11)
	Homo sapiens (8)
	Escherichia coli K-12 (2)
	Escherichia coli (1)
	Mus musculus (1)

Taxonomy

	Riboviria (11)
	Eukaryota (9)
	Bacteria (3)

Experimental Method

X-RAY DIFFRACTION (23)

Polymer Entity Type

Protein (23)

Refinement Resolution (Å)

	1.5 - 2.0 (11)
	2.0 - 2.5 (6)
	2.5 - 3.0 (5)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (1)
	2010 - 2014 (2)
	2015 - 2019 (3)
	2020 - 2024 (16)

Enzyme Classification Name

	Hydrolases (14)
	Transferases (11)

Symmetry Type

	Asymmetric (8)
	Cyclic (12)
	Dihedral (3)

SCOP Classification

	All beta proteins (12)
	Alpha and beta proteins (a/b) (3)
	Alpha and beta proteins (a+b) (3)

AllSelected

1 to 23 of 23 Structures

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1Q8F \| pdb_00001q8f	Download File View File

Crystal Structure of the E.coli pyrimidine nucleoside hydrolase yeiK

Giabbai, B., Degano, M.

(2004) Structure 12: 739-749

Released	2004-05-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	Pyrimidine nucleoside hydrolase (protein)
Unique Ligands	CA, GOL

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1ZHN \| pdb_00001zhn	Download File View File

Crystal Structure of mouse CD1d bound to the self ligand phosphatidylcholine

Giabbai, B., Sidobre, S., Crispin, M.M.D., Sanchez Ruiz, Y., Bachi, A., Kronenberg, M., Wilson, I.A., Degano, M.

(2005) J Immunol 175: 977-984

Released	2005-07-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	CD1d1 antigen (protein) beta-2-microglobulin (protein)
Unique Ligands	GOL, NAG, PC6
Unique branched monosaccharides	FUC, MAN, NAG

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3MKM \| pdb_00003mkm	Download File View File

Crystal structure of the E. coli pyrimidine nucleoside hydrolase YeiK (Apo-form)

Garau, G., Fornili, A., Giabbai, B., Degano, M.

(2010) J Am Chem Soc 132: 17570-17577

Released	2010-12-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli K-12
Macromolecule	Putative uncharacterized protein YeiK (protein)
Unique Ligands	CA

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3MKN \| pdb_00003mkn	Download File View File

Crystal structure of the E. coli pyrimidine nucleosidase YeiK bound to a competitive inhibitor

Garau, G., Fornili, A., Giabbai, B., Degano, M.

(2010) J Am Chem Soc 132: 17570-17577

Released	2010-12-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12
Macromolecule	Putative uncharacterized protein YeiK (protein)
Unique Ligands	CA, DNB

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6HK3 \| pdb_00006hk3	Download File View File

Crystal structure of GSK-3B in complex with pyrazine inhibitor C44

Piretti, V., Giabbai, B., Demitri, N., Di Martino, R., Tripathi, S.K., Gobbo, D., Decherchi, S., Storici, P., Girotto, S., Cavalli, A.

(2019) J Chem Theory Comput 15: 4646-4659

Released	2019-07-17
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	GLY-SER-HIS-GLY-HIS-HIS-HIS-HIS (protein) Glycogen synthase kinase-3 beta (protein)
Unique Ligands	CL, DMS, G8B, GOL, MLI

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6HK4 \| pdb_00006hk4	Download File View File

Crystal structure of GSK-3B in complex with pyrazine inhibitor C22

Piretti, V., Giabbai, B., Demitri, N., Di Martino, R., Tripathi, S.K., Gobbo, D., Decherchi, S., Storici, P., Girotto, S., Cavalli, A.

(2019) J Chem Theory Comput 15: 4646-4659

Released	2019-07-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	GLY-SER-HIS-GLY-HIS-HIS-HIS-HIS-HIS (protein) Glycogen synthase kinase-3 beta (protein)
Unique Ligands	DMS, G8E, GOL, MLI

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6HK7 \| pdb_00006hk7	Download File View File

Crystal structure of GSK-3B in complex with pyrazine inhibitor C50

Piretti, V., Giabbai, B., Demitri, N., Di Martino, R., Tripathi, S.K., Gobbo, D., Decherchi, S., Storici, P., Girotto, S., Cavalli, A.

(2019) J Chem Theory Comput 15: 4646-4659

Released	2019-07-17
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Glycogen synthase kinase-3 beta (protein)
Unique Ligands	DMS, G8N, GOL

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7ALH \| pdb_00007alh	Download File View File

Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 at 1.65A resolution (spacegroup C2).

Costanzi, E., Demitri, N., Giabbai, B., Heroux, A., Storici, P.

(2021) Int J Mol Sci 22:

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)

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7ALI \| pdb_00007ali	Download File View File

Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 at 1.65A resolution (spacegroup P2(1)).

Costanzi, E., Demitri, N., Giabbai, B., Heroux, A., Storici, P.

(2021) Int J Mol Sci 22:

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)

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7B3E \| pdb_00007b3e	Download File View File

Crystal structure of myricetin covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

(2021) Acs Pharmacol Transl Sci 4: 1096-1110

Released	2021-01-13
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Main Protease (protein)
Unique Ligands	CL, EDO, MYC, NA

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7BB2 \| pdb_00007bb2	Download File View File

Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 at 1.6A resolution (spacegroup P2(1)2(1)2(1))

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

(2021) Int J Mol Sci 22:

Released	2021-03-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	CL, EDO, NA

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7BE7 \| pdb_00007be7	Download File View File

Crystal structure of MG-132 covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2.

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

(2021) Int J Mol Sci 22:

Released	2021-03-03
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ALD, CL, EDO, NA, PEG

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7BFB \| pdb_00007bfb	Download File View File

Crystal structure of ebselen covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2.

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

To be published

Released	2021-03-03
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Main Protease (protein)
Unique Ligands	9JT, EDO, NA

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7BGP \| pdb_00007bgp	Download File View File

Crystal structure of MG-132 covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2 in absence of DTT.

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

(2021) Int J Mol Sci 22:

Released	2021-03-03
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ALD, CL, EDO, NA

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7NBY \| pdb_00007nby	Download File View File

Crystal structure of SU3327 (halicin) covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2.

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

To be published

Released	2021-03-03
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Main Protease (protein)
Unique Ligands	CL, NA, NO3, SO4, U88

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7NF5 \| pdb_00007nf5	Download File View File

Crystal structure of MG-132 covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2 in spacegroup C2.

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

(2021) Int J Mol Sci 22:

Released	2021-04-07
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ALD, CL, EDO, IPA, NA

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7NG3 \| pdb_00007ng3	Download File View File

Crystal structure of MG-132 covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2 in spacegroup P1.

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

(2021) Int J Mol Sci 22:

Released	2021-04-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ALD, CL

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7NG6 \| pdb_00007ng6	Download File View File

Crystal structure of MG-132 covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2 in spacegroup P1 in absence of DTT.

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

(2021) Int J Mol Sci 22:

Released	2021-04-07
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ACT, ALD, CL