RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: PubMed ID = 30403352

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 102 Structures.

Refinements

Structure Determination Methodology

experimental (102)

Scientific Name of Source Organism

	Homo sapiens (18)
	Mus musculus (10)
	Bacteroides thetaiotaomicron VPI-5482 (6)
	Streptococcus pneumoniae (4)
	Danio rerio (3)
	Escherichia coli O157:H7 (3)
	Halobacterium salinarum (3)
	Pedobacter heparinus (3)
	Streptococcus pyogenes phage H4489A (3)
	Alteromonas sp. LOR (2)

More...

Taxonomy

	Bacteria (50)
	Eukaryota (39)
	Varidnaviria (4)
	Archaea (3)
	unclassified bacterial viruses (3)
	Riboviria (2)
	Duplodnaviria (1)
	Monodnaviria (1)
	other sequences (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (83)
	ELECTRON MICROSCOPY (14)
	SOLUTION NMR (3)
	FIBER DIFFRACTION (2)
	THEORETICAL MODEL (1)

Polymer Entity Type

Protein (97)

Refinement Resolution (Å)

	1.0 - 1.5 (11)
	1.5 - 2.0 (31)
	2.0 - 2.5 (26)
	2.5 - 3.0 (12)
	3.0 - 3.5 (17)
	3.5 - 4.0 (2)

Release Date

	1980 - 1984 (2)
	1990 - 1994 (1)
	2000 - 2004 (11)
	2005 - 2009 (9)
	2010 - 2014 (19)
	2015 - 2019 (25)
	2020 - 2024 (34)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (21)
	Transferases (14)
	Lyases (17)
	Isomerases (1)

Membrane Protein Annotation

	PDBTM (5)
	MemProtMD (3)
	OPM (1)

Symmetry Type

	Asymmetric (72)
	Cyclic (20)
	Dihedral (5)
	Helical (3)
	Icosahedral (1)

SCOP Classification

	All beta proteins (15)
	Alpha and beta proteins (a/b) (17)
	Alpha and beta proteins (a+b) (9)
	Artifacts (4)
	All alpha proteins (7)
	Multi-domain proteins (alpha and beta) (2)
	Membrane and cell surface proteins and peptides (1)
	Small proteins (1)

AllSelected

1 to 25 of 102 Structures

Page 1 of 5

Sort by

Explore in 3D

1CAP \| pdb_00001cap	Download File View File

CONFORMATION AND MOLECULAR ORGANIZATION IN FIBERS OF THE CAPSULAR POLYSACCHARIDE FROM ESCHERICHIA COLI M41 MUTANT

Arnott, S.

(1977) J Mol Biology 109: 373-391

Released	1980-03-28
Method	FIBER DIFFRACTION 3 Å
Unique branched monosaccharides	BDP, BGC, CEG, GAL, MAN

Explore in 3D

1GQK \| pdb_00001gqk	Download File View File

Structure of Pseudomonas cellulosa alpha-D-glucuronidase complexed with glucuronic acid

Nurizzo, D., Nagy, T., Gilbert, H.J., Davies, G.J.

(2002) Structure 10: 547

Released	2002-09-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cellvibrio japonicus
Macromolecule	ALPHA-D-GLUCURONIDASE (protein)
Unique Ligands	BDP, CO, EDO

Explore in 3D

1GQL \| pdb_00001gql	Download File View File

Structure of Pseudomonas cellulosa alpha-D-glucuronidase complexed with glucuronic acid and xylotriose

Nurizzo, D., Nagy, T., Gilbert, H.J., Davies, G.J.

(2002) Structure 10: 547

Released	2002-09-26
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Cellvibrio japonicus
Macromolecule	ALPHA-D-GLUCURONIDASE (protein)
Unique Ligands	BDP, CO, EDO
Unique branched monosaccharides	XYP

Explore in 3D

1HM3 \| pdb_00001hm3	Download File View File

ACTIVE SITE OF CHONDROITINASE AC LYASE REVEALED BY THE STRUCTURE OF ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS

Huang, W., Boju, L., Tkalec, L., Su, H., Yang, H.O., Gunay, N.S., Linhardt, R.J., Kim, Y.S., Matte, A., Cygler, M.

(2001) Biochemistry 40: 2359-2372

Released	2001-05-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE AC (protein)
Unique Ligands	CA
Unique branched monosaccharides	BDP, GCU, MAN, MXY, NAG, RAM, XYP

Explore in 3D

1HMW \| pdb_00001hmw	Download File View File

ACTIVE SITE OF CHONDROITINASE AC LYASE REVEALED BY THE STRUCTURE OF ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS

Huang, W., Boju, L., Tkalec, L., Su, H., Yang, H.O., Gunay, N.S., Linhardt, R.J., Kim, Y.S., Matte, A., Cygler, M.

(2001) Biochemistry 40: 2359-2372

Released	2001-05-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE AC (protein)
Unique Ligands	CA
Unique branched monosaccharides	ASG, BDP, GCD, GCU, MAN, MXY, NG6, RAM, XYP

Explore in 3D

1HUA \| pdb_00001hua	Download File View File

THE SOLUTION CONFORMATION OF HYALURONAN: A COMBINED NMR AND MOLECULAR DYNAMICS STUDY

Holmbeck, S.M.A., Petillo, P.A., Lerner, L.E.

(1994) Biochemistry 33: 14246-14255

Released	1994-11-30
Method	SOLUTION NMR
Unique branched monosaccharides	BDP, GC1, NGA

Explore in 3D

1LOH \| pdb_00001loh	Download File View File

Streptococcus pneumoniae Hyaluronate Lyase in Complex with Hexasaccharide Hyaluronan Substrate

Jedrzejas, M.J., Mello, L.V., De Groot, B.L., Li, S.

(2002) J Biological Chem 277: 28287-28297

Released	2002-08-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus pneumoniae
Macromolecule	Hyaluronate Lyase (protein)
Unique branched monosaccharides	BDP, NAG

Explore in 3D

1LXK \| pdb_00001lxk	Download File View File

Streptococcus pneumoniae Hyaluronate Lyase in Complex with Tetrasaccharide Hyaluronan Substrate

Jedrzejas, M.J., Mello, L.V., De Groot, B.L., Li, S.

(2002) J Biological Chem 277: 28287-28297

Released	2002-08-07
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Streptococcus pneumoniae
Macromolecule	Hyaluronate Lyase (protein)
Unique branched monosaccharides	BDP, NAG

Explore in 3D

1LXM \| pdb_00001lxm	Download File View File

Crystal Structure of Streptococcus agalactiae Hyaluronate Lyase Complexed with Hexasaccharide Unit of Hyaluronan

Mello, L.V., de Groot, B.L., Li, S., Jedrzejas, M.J.

(2002) J Biological Chem 277: 36678-36688

Released	2002-10-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Streptococcus agalactiae
Macromolecule	HYALURONATE Lyase (protein)
Unique branched monosaccharides	BDP, NAG

Explore in 3D

1N7Q \| pdb_00001n7q	Download File View File

Streptococcus pneumoniae Hyaluronate Lyase W291A/W292A Double Mutant complex with hyaluronan hexasacchride

Nukui, M., Taylor, K.B., McPherson, D.T., Shigenaga, M., Jedrzejas, M.J.

(2003) J Biological Chem 278: 3079-3088

Released	2002-12-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONIDASE (protein)
Unique branched monosaccharides	BDP, GTR, NAG

Explore in 3D

1N7R \| pdb_00001n7r	Download File View File

Streptococcus pneumoniae Hyaluronate Lyase W291A/W292A/F343V Mutant complex with hexasaccharide hyaluronan

Nukui, M., Taylor, K.B., McPherson, D.T., Shigenaga, M., Jedrzejas, M.J.

(2003) J Biological Chem 278: 3079-3088

Released	2002-12-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONIDASE (protein)
Unique branched monosaccharides	BDP, NAG

Explore in 3D

1OFM \| pdb_00001ofm	Download File View File

CRYSTAL STRUCTURE OF CHONDROITINASE B COMPLEXED TO CHONDROITIN 4-SULFATE TETRASACCHARIDE

Michel, G., Cygler, M.

(2004) J Biological Chem 279: 32882

Released	2004-04-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE B (protein)
Unique branched monosaccharides	ASG, BDP, BGC, GCD, GCU, GLA, MAN, MXZ, RAM, XYP

Explore in 3D

1ON8 \| pdb_00001on8	Download File View File

Crystal structure of mouse alpha-1,4-N-acetylhexosaminyltransferase (EXTL2) with UDP and GlcUAb(1-3)Galb(1-O)-naphthalenelmethanol an acceptor substrate analog

Pedersen, L.C., Dong, J., Taniguchi, F., Kitagawa, H., Krahn, J.M., Pedersen, L.G., Sugahara, K., Negishi, M.

(2003) J Biological Chem 278: 14420-14428

Released	2003-04-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus
Macromolecule	Alpha-1,4-N-acetylhexosaminyltransferase EXTL2 (protein)
Unique Ligands	EDO, MN, UDP
Unique branched monosaccharides	BDP, GAL

Explore in 3D

2BVK \| pdb_00002bvk	Download File View File

Hyaluronan: the local solution conformation determined by NMR and computer modelling is close to a contracted left-handed four-fold helix

Almond, A., DeAngelis, P.L., Blundell, C.D.

(2006) J Mol Biology 358: 1256

Released	2006-10-30
Method	SOLUTION NMR THEORETICAL MODEL
Unique branched monosaccharides	BDP, NAG

Explore in 3D

2GD4 \| pdb_00002gd4	Download File View File

Crystal Structure of the Antithrombin-S195A Factor Xa-Pentasaccharide Complex

Johnson, D.J., Li, W., Adams, T.E., Huntington, J.A.

(2006) EMBO J 25: 2029-2037

Released	2006-05-09
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Antithrombin-III (protein) Coagulation factor X, Stuart factor, Stuart-Prower factor, Contains: Factor X light chain; Factor X heavy chain; Activated factor Xa heavy chain (protein) Coagulation factor, Stuart factor, Stuart-Prower factor, Contains: Factor X light chain; Factor X heavy chain; Activated factor Xa heavy chain (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	BDP, BMA, IDS, MAN, NAG, SGN, SUS, ZDO

Explore in 3D

2JCQ \| pdb_00002jcq	Download File View File

The hyaluronan binding domain of murine CD44 in a Type A complex with an HA 8-mer

Banerji, S., Wright, A.J., Noble, M.E.M., Mahoney, D.J., Campbell, I.D., Day, A.J., Jackson, D.G.

(2008) Nat Struct Mol Biol 14: 234

Released	2007-01-30
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Mus musculus
Macromolecule	CD44 ANTIGEN (protein)
Unique Ligands	GOL
Unique branched monosaccharides	BDP, NAG

Explore in 3D

2JCR \| pdb_00002jcr	Download File View File

The hyaluronan binding domain of murine CD44 in a Type B complex with an HA 8-mer

Banerji, S., Wright, A.J., Noble, M.E.M., Mahoney, D.J., Campbell, I.D., Day, A.J., Jackson, D.G.

(2008) Nat Struct Mol Biol 14: 234

Released	2007-01-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	CD44 ANTIGEN (protein)
Unique Ligands	GOL
Unique branched monosaccharides	BDP, NAG

Explore in 3D

2KQO \| pdb_00002kqo	Download File View File

A 3D-structural model of unsulphated chondroitin from high-field NMR: 4-sulphation has little effect on backbone conformation

Sattelle, B.M., Shakeri, J., Roberts, I.S., Almond, A.

(2010) Carbohydr Res 345: 291-302

Released	2009-12-01
Method	SOLUTION NMR
Unique branched monosaccharides	BDP, NGA

Explore in 3D

3A0N \| pdb_00003a0n	Download File View File

Crystal structure of D-glucuronic acid-bound alginate lyase vAL-1 from Chlorella virus

Ogura, K., Yamasaki, M., Hashidume, T., Yamada, T., Mikami, B., Hashimoto, W., Murata, K.

(2009) J Biological Chem 284: 35572-35579

Released	2009-10-20
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Paramecium bursaria Chlorella virus CVK2
Macromolecule	VAL-1 (protein)
Unique Ligands	BDP

Explore in 3D

3C9E \| pdb_00003c9e	Download File View File

Crystal structure of the cathepsin K : chondroitin sulfate complex.

Kienetz, M., Cherney, M.M., James, M.N.G., Bromme, D.

(2008) J Mol Biology 383: 78-91

Released	2008-08-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Cathepsin K (protein)
Unique Ligands	CA, E64
Unique branched monosaccharides	ASG, BDP

Explore in 3D

3EVJ \| pdb_00003evj	Download File View File

Intermediate structure of antithrombin bound to the natural pentasaccharide

Huntington, J.A., Belzar, K.J.

(2009) J Mol Biology 386: 1278-1289

Released	2008-10-21
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Antithrombin-III (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BDP, IDS, MAN, NAG, SGN, SUS, ZDO

Explore in 3D

3H7D \| pdb_00003h7d	Download File View File

The crystal structure of the cathepsin K Variant M5 in complex with chondroitin-4-sulfate

Cherney, M.M., Kienetz, M., Bromme, D., James, M.N.G.

(2011) J Biological Chem 286: 8988-8998

Released	2010-04-28
Method	X-RAY DIFFRACTION 2.242 Å
Organisms	Homo sapiens
Macromolecule	Cathepsin K (protein)
Unique Ligands	CA, E64
Unique branched monosaccharides	ASG, BDP

Explore in 3D

3HYA \| pdb_00003hya	Download File View File

HYALURONIC ACID, MOLECULAR CONFORMATIONS AND INTERACTIONS IN TWO SODIUM SALTS

Arnott, S.

(1975) J Mol Biology 95: 359-384

Released	1980-03-28
Method	FIBER DIFFRACTION 3 Å
Unique Ligands	NA
Unique branched monosaccharides	BDP, GCU, NAG

Explore in 3D

3IM0 \| pdb_00003im0	Download File View File

Crystal structure of Chlorella virus vAL-1 soaked in 200mM D-glucuronic acid, 10% PEG-3350, and 200mM glycine-NaOH (pH 10.0)

Ogura, K., Yamasaki, M., Hashidume, T., Yamada, T., Mikami, B., Hashimoto, W., Murata, K.

(2009) J Biological Chem 284: 35572-35579

Released	2009-10-20
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Paramecium bursaria Chlorella virus CVK2
Macromolecule	VAL-1 (protein)
Unique Ligands	BDP

Explore in 3D

3KL3 \| pdb_00003kl3	Download File View File

Crystal structure of Ligand bound XynC

St John, F.J., Hurlbert, J.C., Pozharski, E.

(2011) J Mol Biology 407: 92-109

Released	2010-12-08
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Glucuronoxylanase xynC (protein)
Unique Ligands	BDP, DHI, GCU, PG4

1 to 25 of 102 Structures

Page 1 of 5

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1CAP | pdb_00001cap

1GQK | pdb_00001gqk

1GQL | pdb_00001gql

1HM3 | pdb_00001hm3

1HMW | pdb_00001hmw

1HUA | pdb_00001hua

1LOH | pdb_00001loh

1LXK | pdb_00001lxk

1LXM | pdb_00001lxm

1N7Q | pdb_00001n7q

1N7R | pdb_00001n7r

1OFM | pdb_00001ofm

1ON8 | pdb_00001on8

2BVK | pdb_00002bvk

2GD4 | pdb_00002gd4

2JCQ | pdb_00002jcq

2JCR | pdb_00002jcr

2KQO | pdb_00002kqo

3A0N | pdb_00003a0n

3C9E | pdb_00003c9e

3EVJ | pdb_00003evj

3H7D | pdb_00003h7d

3HYA | pdb_00003hya

3IM0 | pdb_00003im0

3KL3 | pdb_00003kl3