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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 33824325

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Search Summary

This query matches 32 Structures.

Refinements

Structure Determination Methodology

experimental (32)

Scientific Name of Source Organism

	Homo sapiens (32)
	synthetic construct (9)

Taxonomy

	Eukaryota (32)
	other sequences (9)

Experimental Method

X-RAY DIFFRACTION (32)

Polymer Entity Type

	DNA (32)
	Protein (32)

Refinement Resolution (Å)

	1.0 - 1.5 (14)
	1.5 - 2.0 (18)

Release Date

2020 - 2024 (32)

Enzyme Classification Name

Transferases (32)

Symmetry Type

Asymmetric (32)

AllSelected

1 to 25 of 32 Structures

Page 1 of 2

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7KSS \| pdb_00007kss	Download File View File

DNA Polymerase Mu, dGTP:Ct Pre-Catalytic Ground State Ternary Complex, 10 mM Ca2+ (20min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2022-05-11
Method	X-RAY DIFFRACTION 1.503 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPA)-3') (nucleic acid) DNA (5'-D(PGPCPCP*G)-3') (nucleic acid)
Unique Ligands	CA, CL, DGT, EDO, EPE, NA

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7KST \| pdb_00007kst	Download File View File

DNA Polymerase Mu, dGTP:Ct Reaction State Ternary Complex, 10 mM Mn2+ (2min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-01
Method	X-RAY DIFFRACTION 1.599 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAPG)-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	DGT, DTT, EDO, EPE, MN, NA, PPV

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7KSU \| pdb_00007ksu	Download File View File

DNA Polymerase Mu, dGTP:Ct Product State Ternary Complex, 10 mM Mn2+ (4min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2022-01-19
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAPG)-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	DTT, EDO, EPE, MN, NA, PPV

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7KSV \| pdb_00007ksv	Download File View File

DNA Polymerase Mu, dGTP:Ct Product State Ternary Complex, 10 mM Mn2+ (960min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-01
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAPG)-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	DTT, EDO, EPE, GOA, MN, NA

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7KSW \| pdb_00007ksw	Download File View File

DNA Polymerase Mu, dGTP:Ct Reaction State Ternary Complex, 10 mM Mg2+ (10min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-01
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAPG)-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	CL, DGT, DTT, EDO, EPE, MG, NA, PPV

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7KSX \| pdb_00007ksx	Download File View File

DNA Polymerase Mu, dGTP:Ct Product State Ternary Complex, 10 mM Mg2+ (30min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-01
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAPG)-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	DTT, EDO, EPE, MG, NA, PPV

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7KSY \| pdb_00007ksy	Download File View File

DNA Polymerase Mu, dGTP:Ct Product State Ternary Complex, 10 mM Mg2+ (960min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-01
Method	X-RAY DIFFRACTION 1.577 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAPG)-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	DTT, EDO, EPE, GOA, MG, NA

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7KSZ \| pdb_00007ksz	Download File View File

DNA Polymerase Mu, dGTP:At Pre-Catalytic Ground State Ternary Complex, 10 mM Ca2+ (960min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2022-01-19
Method	X-RAY DIFFRACTION 1.417 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPA)-3') (nucleic acid) DNA (5'-D(PGPCPCP*G)-3') (nucleic acid)
Unique Ligands	CA, DGT, DTT, EDO, EPE, NA

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7KT0 \| pdb_00007kt0	Download File View File

DNA Polymerase Mu, dGTP:At Ground State Ternary Complex, 50 mM Mg2+ (60min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2022-01-19
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPA)-3') (nucleic acid) DNA (5'-D(PGPCPCP*G)-3') (nucleic acid)
Unique Ligands	CL, DGT, DTT, EDO, EPE, MG, NA

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7KT1 \| pdb_00007kt1	Download File View File

DNA Polymerase Mu, dGTP:At Reaction State Ternary Complex, 50 mM Mn2+ (180min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2022-01-19
Method	X-RAY DIFFRACTION 1.665 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAPG)-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	CL, DGT, EDO, EPE, MN, NA

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7KT2 \| pdb_00007kt2	Download File View File

DNA Polymerase Mu, dGTP:At Product State Ternary Complex, 50 mM Mn2+ (225min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2022-01-19
Method	X-RAY DIFFRACTION 1.499 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAPG)-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	DGT, DTT, EDO, EPE, MN, NA

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7KT3 \| pdb_00007kt3	Download File View File

DNA Polymerase Mu, 8-oxodGTP:At Pre-Catalytic Ground State Ternary Complex, 20 mM Ca2+ (120min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-15
Method	X-RAY DIFFRACTION 1.879 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPA)-3') (nucleic acid) DNA (5'-D(PGPCPCP*G)-3') (nucleic acid)
Unique Ligands	8DG, CA, CL, DTT, EDO, EPE, NA

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7KT4 \| pdb_00007kt4	Download File View File

DNA Polymerase Mu, 8-oxodGTP:At Reaction State Ternary Complex, 10 mM Mn2+ (30min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-15
Method	X-RAY DIFFRACTION 1.922 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8OG))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	8DG, CL, DTT, EDO, EPE, MN, NA, PPV

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7KT5 \| pdb_00007kt5	Download File View File

DNA Polymerase Mu, 8-oxodGTP:At Product State Ternary Complex, 10 mM Mn2+ (120min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-15
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8OG))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	CL, DTT, EDO, EPE, GOA, GOL, MN, NA

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7KT6 \| pdb_00007kt6	Download File View File

DNA Polymerase Mu, 8-oxodGTP:At Product State Ternary Complex, 10 mM Mn2+ (960min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-15
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8OG))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	DTT, EDO, EPE, GOA, MN, NA

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7KT7 \| pdb_00007kt7	Download File View File

DNA Polymerase Mu, 8-oxodGTP:At Reaction State Ternary Complex, 50 mM Mg2+ (60min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-15
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8OG))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	8DG, CL, DTT, EDO, EPE, MG, NA, PPV

Explore in 3D

7KT8 \| pdb_00007kt8	Download File View File

DNA Polymerase Mu, 8-oxodGTP:At Product State Ternary Complex, 50 mM Mg2+ (180min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-15
Method	X-RAY DIFFRACTION 1.701 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8OG))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	CL, DTT, EDO, EPE, MG, NA, PPV

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7KT9 \| pdb_00007kt9	Download File View File

DNA Polymerase Mu, 8-oxodGTP:At Product State Ternary Complex, 50 mM Mg2+ (960min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-15
Method	X-RAY DIFFRACTION 1.482 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPAPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8OG))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	CL, DTT, EDO, EPE, GOA, MG, NA

Explore in 3D

7KTA \| pdb_00007kta	Download File View File

DNA Polymerase Mu, 8-oxodGTP:Ct Pre-Catalytic Ground State Ternary Complex, 20 mM Ca2+ (120min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-15
Method	X-RAY DIFFRACTION 1.844 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPA)-3') (nucleic acid) DNA (5'-D(PGPCPCP*G)-3') (nucleic acid)
Unique Ligands	8DG, CA, CL, EDO, EPE, NA

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7KTB \| pdb_00007ktb	Download File View File

DNA Polymerase Mu, 8-oxodGTP:Ct Reaction State Ternary Complex, 10 mM Mn2+ (40min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2022-05-11
Method	X-RAY DIFFRACTION 1.576 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8OG))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	8DG, DTT, EDO, EPE, MN, NA, PPV

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7KTC \| pdb_00007ktc	Download File View File

DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 10 mM Mn2+ (120min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2022-05-11
Method	X-RAY DIFFRACTION 1.653 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8OG))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	DTT, EDO, EPE, MN, NA, PPV

Explore in 3D

7KTD \| pdb_00007ktd	Download File View File

DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 10 mM Mn2+ (960min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2022-05-11
Method	X-RAY DIFFRACTION 1.551 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8OG))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	DTT, EDO, EPE, MN, NA, PPV

Explore in 3D

7KTE \| pdb_00007kte	Download File View File

DNA Polymerase Mu, 8-oxodGTP:Ct Reaction State Ternary Complex, 50 mM Mg2+ (90min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-15
Method	X-RAY DIFFRACTION 1.479 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8OG))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	8DG, CL, DTT, EDO, EPE, GOL, MG, NA, PPV

Explore in 3D

7KTF \| pdb_00007ktf	Download File View File

DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 50 mM Mg2+ (180min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-15
Method	X-RAY DIFFRACTION 1.489 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8OG))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	EDO, EPE, MG, NA, PPV

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7KTG \| pdb_00007ktg	Download File View File

DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 50 mM Mg2+ (960min)

Jamsen, J.A., Wilson, S.H.

(2021) Nat Commun 12: 2059-2059

Released	2021-12-15
Method	X-RAY DIFFRACTION 1.445 Å
Organisms	Homo sapiens
Macromolecule	DNA-directed DNA/RNA polymerase mu (protein) DNA (5'-D(CPGPGPCPCPTPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPAP(8OG))-3') (nucleic acid) DNA (5'-D(PGPCPCPG)-3') (nucleic acid)
Unique Ligands	CL, DTT, EDO, EPE, GOA, MG, NA

1 to 25 of 32 Structures

Page 1 of 2

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

7KSS | pdb_00007kss

7KST | pdb_00007kst

7KSU | pdb_00007ksu

7KSV | pdb_00007ksv

7KSW | pdb_00007ksw

7KSX | pdb_00007ksx

7KSY | pdb_00007ksy

7KSZ | pdb_00007ksz

7KT0 | pdb_00007kt0

7KT1 | pdb_00007kt1

7KT2 | pdb_00007kt2

7KT3 | pdb_00007kt3

7KT4 | pdb_00007kt4

7KT5 | pdb_00007kt5

7KT6 | pdb_00007kt6

7KT7 | pdb_00007kt7

7KT8 | pdb_00007kt8

7KT9 | pdb_00007kt9

7KTA | pdb_00007kta

7KTB | pdb_00007ktb

7KTC | pdb_00007ktc

7KTD | pdb_00007ktd

7KTE | pdb_00007kte

7KTF | pdb_00007ktf

7KTG | pdb_00007ktg