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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 38058289

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Agrobacterium tumefaciens (9)
	Allorhizobium ampelinum S4 (6)
	Agrobacterium fabrum str. C58 (3)

Taxonomy

Bacteria (18)

Experimental Method

X-RAY DIFFRACTION (18)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (8)
	2.5 - 3.0 (1)

Release Date

2020 - 2024 (18)

Symmetry Type

Asymmetric (18)

AllSelected

1 to 18 of 18 Structures

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8C6R \| pdb_00008c6r	Download File View File

PBP AccA from A. tumefaciens Bo542 in apoform 4

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.884 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	EDO, PEG, PGE

Explore in 3D

8C6U \| pdb_00008c6u	Download File View File

PBP AccA-G145YG440Q mutant from A. tumefaciens Bo542 in apoform 4

Morera, S., Vigouroux, A., Legrand, P.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.843 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	ACT, EDO, PEG

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8C6W \| pdb_00008c6w	Download File View File

PBP AccA from A. tumefaciens Bo542 in apoform 1

Morera, S., Vigouroux, A., Legrand, P.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)

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8C6Y \| pdb_00008c6y	Download File View File

PBP AccA from A. tumefaciens Bo542 in apoform 2

Morera, S., Vigouroux, A., legrand, P.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.901 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	EDO

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8C75 \| pdb_00008c75	Download File View File

PBP AccA from A. tumefaciens Bo542 in apoform 3

Morera, S., Vigouroux, A., Legrand, P.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.673 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	EDO, NA, PEG, PGE

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8CAW \| pdb_00008caw	Download File View File

PBP AccA from A. tumefaciens Bo542 in complex with agrocin84

Morera, S., Vigouroux, A., El Sahili, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.256 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	C84, EDO, UKU

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8CAY \| pdb_00008cay	Download File View File

PBP AccA from A. tumefaciens Bo542 in complex with Agrocinopine D-like

Morera, S., Vigouroux, A., Siragu, S.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.626 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	NA, PEG, Y45, Y4H

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8CB9 \| pdb_00008cb9	Download File View File

PBP AccA from A. tumefaciens Bo542 in complex with D-Glucose-2-phosphate

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	ALX, BNX

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8CDO \| pdb_00008cdo	Download File View File

PBP AccA-F144YG440Q from A. tumefaciens Bo542 in complex with agrocinopine C-like

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	ALX, BNX, EDO, PEG, PG4, PGE
Unique branched monosaccharides	FRU, GLC

Explore in 3D

8CH1 \| pdb_00008ch1	Download File View File

PBP AccA from A. vitis S4 in complex with Agrocinopine A

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.496 Å
Organisms	Allorhizobium ampelinum S4
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	EDO, LAO, PEG, VDF
Unique branched monosaccharides	FRU, GLC

Explore in 3D

8CH2 \| pdb_00008ch2	Download File View File

PBP AccA from A. vitis S4 in complex with L-arabinose-2-phosphate (A2P)

Morera, S., Deicsics, G., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.404 Å
Organisms	Allorhizobium ampelinum S4
Macromolecule	AccA (protein)
Unique Ligands	EDO, LAO, VDF

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8CH3 \| pdb_00008ch3	Download File View File

PBP AccA from A. vitis S4 in complex with Agrocinopine C-like

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.398 Å
Organisms	Allorhizobium ampelinum S4
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	ALX
Unique branched monosaccharides	FRU, GLC

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8CHC \| pdb_00008chc	Download File View File

PBP AccA from A. vitis S4 in complex with Agrocinopine D-like

Morera, S., Vigouroux, A., Deicsics, G.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.679 Å
Organisms	Allorhizobium ampelinum S4
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	Y45

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8CI6 \| pdb_00008ci6	Download File View File

PBP AccA from A. vitis S4 in complex with D-glucose-2-phosphate (G2P)

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.199 Å
Organisms	Allorhizobium ampelinum S4
Macromolecule	ABC transporter substrate binding protein (Agrocinopine) (protein)
Unique Ligands	ALX, BNX

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8CJU \| pdb_00008cju	Download File View File

PBP AccA from A. vitis S4 in complex with agrocin84

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.349 Å
Organisms	Allorhizobium ampelinum S4
Macromolecule	ABC transporter substrate binding protein (Agrocinopine) (protein)
Unique Ligands	UKU

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8CKD \| pdb_00008ckd	Download File View File

PBP AccA from A. fabrum C58 in complex with agrocinopine D-like

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	ABC transporter substrate-binding protein (protein)
Unique Ligands	EDO, Y45, Y4H

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8CKE \| pdb_00008cke	Download File View File

PBP AccA from A.tumefaciens C58 in complex with agrocinopine A in space group I222

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.298 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	ABC transporter substrate-binding protein (protein)
Unique Ligands	ACT, EDO, LAO, VDF
Unique branched monosaccharides	FRU, GLC

Explore in 3D

8CKO \| pdb_00008cko	Download File View File

PBP AccA from A.tumefaciens C58 in complex with agrocinopine C-like

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.421 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	ABC transporter substrate-binding protein (protein)
Unique Ligands	ALX, BNX
Unique branched monosaccharides	FRU, GLC

1 to 18 of 18 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

8C6R | pdb_00008c6r

PBP AccA from A. tumefaciens Bo542 in apoform 4

8C6U | pdb_00008c6u

PBP AccA-G145YG440Q mutant from A. tumefaciens Bo542 in apoform 4

8C6W | pdb_00008c6w

PBP AccA from A. tumefaciens Bo542 in apoform 1

8C6Y | pdb_00008c6y

PBP AccA from A. tumefaciens Bo542 in apoform 2

8C75 | pdb_00008c75

PBP AccA from A. tumefaciens Bo542 in apoform 3

8CAW | pdb_00008caw

PBP AccA from A. tumefaciens Bo542 in complex with agrocin84

8CAY | pdb_00008cay

PBP AccA from A. tumefaciens Bo542 in complex with Agrocinopine D-like

8CB9 | pdb_00008cb9

PBP AccA from A. tumefaciens Bo542 in complex with D-Glucose-2-phosphate

8CDO | pdb_00008cdo

PBP AccA-F144YG440Q from A. tumefaciens Bo542 in complex with agrocinopine C-like

8CH1 | pdb_00008ch1

PBP AccA from A. vitis S4 in complex with Agrocinopine A

8CH2 | pdb_00008ch2

PBP AccA from A. vitis S4 in complex with L-arabinose-2-phosphate (A2P)

8CH3 | pdb_00008ch3

PBP AccA from A. vitis S4 in complex with Agrocinopine C-like

8CHC | pdb_00008chc

PBP AccA from A. vitis S4 in complex with Agrocinopine D-like

8CI6 | pdb_00008ci6

PBP AccA from A. vitis S4 in complex with D-glucose-2-phosphate (G2P)

8CJU | pdb_00008cju

PBP AccA from A. vitis S4 in complex with agrocin84

8CKD | pdb_00008ckd

PBP AccA from A. fabrum C58 in complex with agrocinopine D-like

8CKE | pdb_00008cke

PBP AccA from A.tumefaciens C58 in complex with agrocinopine A in space group I222

8CKO | pdb_00008cko

PBP AccA from A.tumefaciens C58 in complex with agrocinopine C-like

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

8C6R | pdb_00008c6r

8C6U | pdb_00008c6u

8C6W | pdb_00008c6w

8C6Y | pdb_00008c6y

8C75 | pdb_00008c75

8CAW | pdb_00008caw

8CAY | pdb_00008cay

8CB9 | pdb_00008cb9

8CDO | pdb_00008cdo

8CH1 | pdb_00008ch1

8CH2 | pdb_00008ch2

8CH3 | pdb_00008ch3

8CHC | pdb_00008chc

8CI6 | pdb_00008ci6

8CJU | pdb_00008cju

8CKD | pdb_00008ckd

8CKE | pdb_00008cke

8CKO | pdb_00008cko