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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

QUERY: PubMed ID = 9280438

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This query matches 42 Structures.

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2QNC	Download File View File

Crystal structure of T4 Endonuclease VII N62D mutant in complex with a DNA Holliday junction

Biertumpfel, C., Yang, W., Suck, D.

(2007) Nature 449: 616-620

Released	2008-01-29
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Tequatrovirus T4
Macromolecule	Recombination endonuclease VII (protein) DNA (5'-D(DAPDGPDGPDCPDCPDTPDAPDGPDCPDGPDTPDCPDCPDGPDGPDAPDAPDTPDTPDCPDTPDTPDCPDG)-3') (nucleic acid) DNA (5'-D(DCPDAPDCPDAPDTPDCPDGPDAPDTPDGPDGPDAPDGPDCPDCPDGPDCPDTPDAPDGPDGPDCPDCPDT)-3') (nucleic acid) DNA (5'-D(DCPDGDAPDAPDGPDAPDAPDTPDTPDCPDCPDGPDGPDAPDTPDTPDAPDGPDGPDGPDAPDTPDCPDC)-3') (nucleic acid) DNA (5'-D(DGPDGPDAPDTPDCPDCPDCPDTPDAPDAPDGPDCPDTPDCPDCPDAPDTPDCPDGPDAPDTPDGPDTPDG)-3') (nucleic acid)
Unique Ligands	EDO, MG, ZN

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2QNF	Download File View File

Crystal structure of T4 Endonuclease VII H43N mutant in complex with heteroduplex DNA containing base mismatches

Biertumpfel, C., Yang, W., Suck, D.

(2007) Nature 449: 616-620

Released	2008-01-29
Method	X-RAY DIFFRACTION 3 Å
Organisms	Tequatrovirus T4
Macromolecule	Recombination endonuclease VII (protein) DNA (5'-D(DCPDAPDCPDAPDTPDCPDGPDAPDTPDGPDGPDAPDGPDCPDCPDG)-3') (nucleic acid) DNA (5'-D(DCPDAPDCPDAPDTPDCPDGPDAPDTPDGPDGPDAPDGPDCPDGPDC)-3') (nucleic acid) DNA (5'-D(DCPDGPDGPDCPDTPDCPDCPDAPDTPDCPDGPDAPDTPDGPDTPDG)-3') (nucleic acid) DNA (5'-D(DGPDCPDGPDCPDTPDCPDCPDAPDTPDCPDGPDAPDTPDGPDTPDG)-3') (nucleic acid)
Unique Ligands	ZN

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3FC3	Download File View File

Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I

Sokolowska, M., Czapinska, H., Bochtler, M.

(2009) Nucleic Acids Res 37: 3799-3810

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Helicobacter pylori J99
Macromolecule	Restriction endonuclease Hpy99I (protein) 5'-(DCPDTPDCPDGPDAPDCPDGPDTPDAPDGPDA)-3' (nucleic acid) 5'-(DTPDAPDCPDGPDTPDCPDGPDAPDGPDTPDC)-3' (nucleic acid)
Unique Ligands	NA, PG4, ZN

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3GOX	Download File View File

Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I in the absence of EDTA

Sokolowska, M., Czapinska, H., Bochtler, M.

(2009) Nucleic Acids Res 37: 3799-3810

Released	2009-04-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Helicobacter pylori J99
Macromolecule	Restriction endonuclease Hpy99I (protein) 5'-(DCPDTPDCPDGPDAPDCPDGPDTPDAPDGPDA)-3' (nucleic acid) 5'-(DTPDAPDCPDGPDTPDCPDGPDAPDGPDTPDC)-3' (nucleic acid)
Unique Ligands	1PE, NA, ZN

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3MR2	Download File View File

Human DNA polymerase eta in complex with normal DNA and incoming nucleotide (Nrm)

Biertumpfel, C., Zhao, Y., Ramon-Maiques, S., Gregory, M.T., Lee, J.Y., Yang, W.

(2010) Nature 465: 1044-1048

Released	2010-06-30
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(TCPAPTPTPAPTPGPAPCPGPCPT)-3') (nucleic acid) DNA (5'-D(TPAPGPCPGPTPCPAPT)-3') (nucleic acid)
Unique Ligands	DZ4, GOL, MG

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3MR3	Download File View File

Human DNA polymerase eta - DNA ternary complex with the 3'T of a CPD in the active site (TT1)

Biertumpfel, C., Zhao, Y., Ramon-Maiques, S., Gregory, M.T., Lee, J.Y., Yang, W.

(2010) Nature 465: 1044-1048

Released	2010-06-30
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(CPAP(TTD)PAPTPGPAPCPGPCPT)-3') (nucleic acid) DNA (5'-D(CPAPGPCPGPTPCPAPT)-3') (nucleic acid)
Unique Ligands	DZ4, GOL, MG

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3MR5	Download File View File

Human DNA polymerase eta - DNA ternary complex with a CPD 1bp upstream of the active site (TT3)

Biertumpfel, C., Zhao, Y., Ramon-Maiques, S., Gregory, M.T., Lee, J.Y., Yang, W.

(2010) Nature 465: 1044-1048

Released	2010-06-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APCPGPTPCPAPTPAPA)-3') (nucleic acid) DNA (5'-D(TPAPAPCP(TTD)PAPTPGPAPCPGP*A)-3') (nucleic acid)
Unique Ligands	GOL, MG, XG4

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3MR6	Download File View File

Human DNA polymerase eta - DNA ternary complex with a CPD 2bp upstream of the active site (TT4)

Biertumpfel, C., Zhao, Y., Ramon-Maiques, S., Gregory, M.T., Lee, J.Y., Yang, W.

(2010) Nature 465: 1044-1048

Released	2010-06-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(CAPTPCPAP(TTD)PAPCPGPAPGPC)-3') (nucleic acid) DNA (5'-D(TPCPTPCPGPTPAPAP*T)-3') (nucleic acid)
Unique Ligands	GOL, MG, XG4

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3ONU	Download File View File

Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026

Hansman, G.S., Biertumpfel, C., Chen, L., Georgiev, I., McLellan, J.S., Katayama, K., Kwong, P.D.

(2011) J Virol 85: 6687-6701

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.395 Å
Organisms	Norwalk virus
Macromolecule	Capsid protein (protein)
Unique Ligands	EDO

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3ONY	Download File View File

Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with Fucose

Hansman, G.S., Biertumpfel, C., Chen, L., Georgiev, I., McLellan, J.S., Katayama, K., Kwong, P.D.

(2011) J Virol 85: 6687-6701

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Norwalk virus
Macromolecule	Capsid protein (protein)
Unique Ligands	EDO, FUC

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3PA1	Download File View File

Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with HBGA type A

Hansman, G.S., Biertumpfel, C., Chen, L., Georgiev, I., McLellan, J.S., Katayama, K., Kwong, P.D.

(2011) J Virol 85: 6687-6701

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Norwalk virus
Macromolecule	Capsid protein (protein)
Unique Ligands	EDO, IMD
Unique branched monosaccharides	A2G, FUC, GAL

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3PA2	Download File View File

Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with HBGA type Ley

Hansman, G.S., Biertumpfel, C., Chen, L., Georgiev, I., McLellan, J.S., Katayama, K., Kwong, P.D.

(2011) J Virol 85: 6687-6701

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Norwalk virus
Macromolecule	Capsid protein (protein)
Unique Ligands	EDO, IMD
Unique branched monosaccharides	FUC, GAL, NAG

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3Q38	Download File View File

Crystal structure of P domain from norwalk virus strain vietnam 026 in complex with HBGA type B (triglycan)

Hansman, G.S., Biertumpfel, C., Chen, L., Georgiev, I., McLellan, J.S., Katayama, K., Kwong, P.D.

(2011) J Virol 85: 6687-6701

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.28 Å
Organisms	Norwalk virus
Macromolecule	Capsid protein (protein)
Unique Ligands	EDO, IMD
Unique branched monosaccharides	FUC, GAL, GLA

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3Q39	Download File View File

Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with HBGA type H2 (diglycan)

Hansman, G.S., Biertumpfel, C., Chen, L., Georgiev, I., McLellan, J.S., Katayama, K., Kwong, P.D.

(2011) J Virol 85: 6687-6701

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Norwalk virus
Macromolecule	Capsid protein (protein)
Unique Ligands	EDO, IMD
Unique branched monosaccharides	FUC, GAL

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3Q3A	Download File View File

Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with HBGA type H2 (triglycan)

Hansman, G.S., Biertumpfel, C., Chen, L., Georgiev, I., McLellan, J.S., Katayama, K., Kwong, P.D.

(2011) J Virol 85: 6687-6701

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Norwalk virus
Macromolecule	Capsid protein (protein)
Unique Ligands	EDO, IMD
Unique branched monosaccharides	FUL, GAL, NAG

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3Q6Q	Download File View File

Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with disordered HBGA type Lea

Hansman, G.S., Biertumpfel, C., Chen, L., Georgiev, I., McLellan, J.S., Katayama, K., Kwong, P.D.

(2011) J Virol 85: 6687-6701

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Norwalk virus
Macromolecule	Capsid protein (protein)
Unique Ligands	EDO, IMD

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3Q6R	Download File View File

Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with disordered HBGA type Lex

Hansman, G.S., Biertumpfel, C., McLellan, J.S., Chen, L., Georgiev, I., Katayama, K., Kwong, P.D.

(2011) J Virol 85: 6687-6701

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Norwalk virus
Macromolecule	Capsid protein (protein)
Unique Ligands	EDO, IMD

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3R6J	Download File View File

Crystal Structure of the Capsid P Domain from Norwalk Virus Strain Hiroshima/1999

Hansman, G.S., Biertumpfel, C., McLellan, J.S., Georgiev, I., Chen, L., Zhou, T., Katayama, K., Kwong, P.D.

(2011) J Virol 85: 6687-6701

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Norwalk-like virus
Macromolecule	VP1 protein (protein)
Unique Ligands	EDO

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3R6K	Download File View File

Crystal Structure of the Capsid P Domain from Norwalk Virus Strain Hiroshima/1999 in complex with HBGA type B (triglycan)

Hansman, G.S., Biertumpfel, C., McLellan, J.S., Georgiev, I., Chen, L., Zhou, T., Katayama, K., Kwong, P.D.

(2011) J Virol 85: 6687-6701

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Norwalk-like virus
Macromolecule	VP1 protein (protein)
Unique Ligands	EDO
Unique branched monosaccharides	FUC, GAL, GLA

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3SI8	Download File View File

Human DNA polymerase eta - DNA ternary complex with the 5'T of a CPD in the active site (TT2)

Biertumpfel, C., Zhao, Y., Kondo, Y., Ramon-Maiques, S., Gregory, M., Lee, J.Y., Masutani, C., Lehmann, A.R., Hanaoka, F., Yang, W.

(2010) Nature 465: 1044-1048

Released	2011-08-03
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(TPAAPCP(TTD)PAPTPGPAPCPGPC)-3') (nucleic acid) DNA (5'-D(TPGPCPGPTPCPAPTP*A)-3') (nucleic acid)
Unique Ligands	3D1, CO, DTT, DZ4, EDO, GOL, MG

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4DL2	Download File View File

Human DNA polymerase eta inserting dCMPNPP opposite CG template (GG0a)

Zhao, Y., Biertumpfel, C., Gregory, M., Hua, Y., Hanaoka, F., Yang, W.

(2012) Proc Natl Acad Sci U S A 109: 7269-7274

Released	2012-05-09
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(APCPGPGPCPTPCPAPCPAPCPT)-3') (nucleic acid) DNA (5'-D(TPAPGPTPGPTPGPAP*G)-3') (nucleic acid)
Unique Ligands	0KX, GOL, MG

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4DL3	Download File View File

Human DNA polymerase eta inserting dCMPNPP opposite GG template (GG0b).

Zhao, Y., Biertumpfel, C., Gregory, M., Hua, Y., Hanaoka, F., Yang, W.

(2012) Proc Natl Acad Sci U S A 109: 7269-7274

Released	2012-05-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(TPAPCPGPGPTPCPAPCPAPCPT)-3') (nucleic acid) DNA (5'-D(TPAPGPTPGPTPGPAP*C)-3') (nucleic acid)
Unique Ligands	0KX, GOL, MG

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4DL4	Download File View File

Human DNA polymerase eta inserting dCMPNPP opposite the 3'G of cisplatin crosslinked Gs (Pt-GG1).

Zhao, Y., Biertumpfel, C., Gregory, M., Hua, Y.-J., Hanaoka, F., Yang, W.

(2012) Proc Natl Acad Sci U S A 109: 7269-7274

Released	2012-05-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(TPAPGPTPGPTPGPAPG)-3') (nucleic acid) DNA (5'-D(PGPGPCPTPCPAPCPAPCP*T)-3') (nucleic acid)
Unique Ligands	0KX, CPT, GOL, MG

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4DL5	Download File View File

Human DNA polymerase eta inserting dCMPNPP opposite the 5'G of cisplatin crosslinked Gs (Pt-GG2).

Zhao, Y., Biertumpfel, C., Gregory, M., Hanaoka, F., Hua, Y., Yang, W.

(2012) Proc Natl Acad Sci U S A 109: 7269-7274

Released	2012-05-09
Method	X-RAY DIFFRACTION 2.92 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(TPAPCPGPGPTPCPAPCPAPCPT)-3') (nucleic acid) DNA (5'-D(PTPAPGPTPGPTPGPAP*C)-3') (nucleic acid)
Unique Ligands	0KX, CPT, MG

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4DL6	Download File View File

Human DNA polymerase eta extending primer immediately after cisplatin crosslink (Pt-GG3).

Zhao, Y., Biertumpfel, C., Gregory, M., Hua, Y., Hanaoka, F., Yang, W.

(2012) Proc Natl Acad Sci U S A 109: 7269-7274

Released	2012-05-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA (5'-D(TPAPGPTPGPTPGPCPC)-3') (nucleic acid) DNA (5'-D(TPAPTPCPGPGPCPAPCPAPCP*T)-3') (nucleic acid)
Unique Ligands	CPT, MG, XG4